Regulog LiuR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Alteromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	14	4
Alteromonas macleodii 'Deep ecotype'	12	5
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H	15	5
Alteromonadales bacterium TW-7	28	10
Pseudoalteromonas haloplanktis TAC125	26	9
Pseudoalteromonas tunicata D2	26	9
Idiomarina baltica OS145	14	4
Idiomarina loihiensis L2TR	13	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
liuR	* Pseudoalteromonas atlantica T6c Site: position = -86 score = 6.07242 sequence = CTTTACGTAAACGTAAAG Site: position = -109 score = 5.68781 sequence = CTTTACCTTTACGTTAAG Gene: Patl_2924: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Alteromonas macleodii 'Deep ecotype' Site: position = -142 score = 5.51502 sequence = ATTAACGTTAACGTAAAC Site: position = -164 score = 5.91288 sequence = CTTTACCTTAACGTAAAA Gene: MADE_02411: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -73 score = 6.38125 sequence = CTTTACGTTAACGTAAAC Site: position = -67 score = 4.66107 sequence = GTTAACGTAAACTTAATA Gene: CPS_1604: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Alteromonadales bacterium TW-7 Site: position = -59 score = 6.04884 sequence = CTTTACCTTTACGTAAAC Gene: ATW7_12583: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Pseudoalteromonas haloplanktis TAC125 Site: position = -60 score = 6.04884 sequence = CTTTACCTTTACGTAAAC Gene: PSHAa1453: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Pseudoalteromonas tunicata D2 Site: position = -55 score = 6.04884 sequence = CTTTACCTTTACGTAAAC Gene: PTD2_19757: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Idiomarina baltica OS145 Site: position = -61 score = 6.38125 sequence = CTTTACGTTAACGTAAAC Gene: OS145_12909: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	* Idiomarina loihiensis L2TR Site: position = -62 score = 6.38125 sequence = CTTTACGTTAACGTAAAC Gene: IL0873: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
liuA	Pseudoalteromonas atlantica T6c Gene: Patl_2925: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02412: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1603: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Alteromonadales bacterium TW-7 Gene: ATW7_12578: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1452: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Pseudoalteromonas tunicata D2 Gene: PTD2_19762: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Idiomarina baltica OS145 Gene: OS145_12904: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Idiomarina loihiensis L2TR Gene: IL0874: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB	Pseudoalteromonas atlantica T6c Gene: Patl_2926: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02413: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1602: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Alteromonadales bacterium TW-7 Gene: ATW7_12573: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1451: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Pseudoalteromonas tunicata D2 Gene: PTD2_19767: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Idiomarina baltica OS145 Gene: OS145_12899: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Idiomarina loihiensis L2TR Gene: IL0875: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuC	Pseudoalteromonas atlantica T6c Gene: Patl_2927: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02414: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1601: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Alteromonadales bacterium TW-7 Gene: ATW7_12568: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1450: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Pseudoalteromonas tunicata D2 Gene: PTD2_19772: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Idiomarina baltica OS145 Gene: OS145_12894: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Idiomarina loihiensis L2TR Gene: IL0876: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD	Pseudoalteromonas atlantica T6c Gene: Patl_2928: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02415: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1600: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Alteromonadales bacterium TW-7 Gene: ATW7_12563: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1449: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Pseudoalteromonas tunicata D2 Gene: PTD2_19777: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Idiomarina baltica OS145 Gene: OS145_12889: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Idiomarina loihiensis L2TR Gene: IL0877: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuE	Pseudoalteromonas atlantica T6c Gene: Patl_2929: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02416: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1599: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Alteromonadales bacterium TW-7 Gene: ATW7_12558: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1448: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Pseudoalteromonas tunicata D2 Gene: PTD2_19782: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Idiomarina baltica OS145 Gene: OS145_12884: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Idiomarina loihiensis L2TR Gene: IL0878: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
aacS	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_12879: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	Idiomarina loihiensis L2TR Gene: IL0879: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)	Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
IL0880	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_12874: Sensory box/GGDEF family protein	Idiomarina loihiensis L2TR Gene: IL0880: Sensory box/GGDEF family protein	Sensory box/GGDEF family protein
etfD	Pseudoalteromonas atlantica T6c Gene: Patl_2147: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Alteromonas macleodii 'Deep ecotype' Site: position = -138 score = 5.6789 sequence = GTTGACGTAAACGTCAAC Site: position = -176 score = 6.17731 sequence = GTTGACGTTAACGTAAAC Gene: MADE_00995: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006517: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Colwellia psychrerythraea 34H Site: position = -197 score = 4.75482 sequence = GTCAACGTCAACGTAAAC Site: position = -203 score = 5.55839 sequence = CTTTACGTCAACGTCAAC Gene: CPS_3686: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Alteromonadales bacterium TW-7 Site: position = -191 score = 4.71441 sequence = CCTAACGTGTACGTCAAC Site: position = -142 score = 5.6789 sequence = GTTGACGTAAACGTCAAC Gene: ATW7_13183: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -141 score = 4.6074 sequence = ATTGACGTAAACATCAAC Site: position = -190 score = 4.82848 sequence = GCTGACGTGCACGTCAAC Gene: PSHAa1619: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Pseudoalteromonas tunicata D2 Site: position = -104 score = 5.6789 sequence = GTTGACGTAAACGTCAAC Gene: PTD2_19430: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Idiomarina baltica OS145 Gene: OS145_12869: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Idiomarina loihiensis L2TR Gene: IL0881: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
liuF	Pseudoalteromonas atlantica T6c Gene: Patl_1620: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01941: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006427: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Colwellia psychrerythraea 34H Gene: CPS_1598: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Alteromonadales bacterium TW-7 Gene: ATW7_12553: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1447: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Pseudoalteromonas tunicata D2 Gene: PTD2_19787: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
liuG	Pseudoalteromonas atlantica T6c Gene: Patl_1619: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01940: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006422: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Colwellia psychrerythraea 34H Gene: CPS_1597: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Alteromonadales bacterium TW-7 Gene: ATW7_12548: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1446: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Pseudoalteromonas tunicata D2 Gene: PTD2_19792: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)

CRON 2.
ivdA	* Pseudoalteromonas atlantica T6c Site: position = -188 score = 5.22443 sequence = CTTAACGTAAAGGTAAAG Site: position = -211 score = 6.26839 sequence = CTTTACGTTTACGTAAAG Gene: Patl_2923: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Alteromonas macleodii 'Deep ecotype' Site: position = -76 score = 5.66322 sequence = TTTTACGTTAAGGTAAAG Site: position = -98 score = 5.63225 sequence = GTTTACGTTAACGTTAAT Gene: MADE_02410: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -91 score = 4.83626 sequence = GTTGACGTAAACTTAAAT Gene: CPS_1605: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Alteromonadales bacterium TW-7 Site: position = -116 score = 5.98114 sequence = GTTGACGTTAGCGTAAAC Gene: ATW7_12588: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -113 score = 5.29397 sequence = ATTTACGTTGGCGTAAAC Gene: PSHAa1454: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Pseudoalteromonas tunicata D2 Site: position = -66 score = 5.29397 sequence = ATTTACGTTGGCGTAAAC Gene: PTD2_19752: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Idiomarina baltica OS145 Site: position = -34 score = 6.37434 sequence = GTTTACGTTAACGTAAAG Gene: OS145_12914: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	* Idiomarina loihiensis L2TR Site: position = -34 score = 6.37434 sequence = GTTTACGTTAACGTAAAG Gene: IL0872: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ivdB	* Pseudoalteromonas atlantica T6c Site: position = -102 score = 5.36091 sequence = ACTGACGTTAACGTAAAG Gene: Patl_0948: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_12593: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1455: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Pseudoalteromonas tunicata D2 Gene: PTD2_19747: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Idiomarina baltica OS145 Gene: OS145_12924: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Idiomarina loihiensis L2TR Gene: IL0870: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
ivdC	Pseudoalteromonas atlantica T6c Gene: Patl_0949: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	* Alteromonas macleodii 'Deep ecotype' Site: position = -32 score = 5.91484 sequence = CTTTACGTTTACGTAAGG Gene: MADE_01905: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0658: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Alteromonadales bacterium TW-7 Gene: ATW7_12598: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1456: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Pseudoalteromonas tunicata D2 Gene: PTD2_19742: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Idiomarina baltica OS145 Gene: OS145_12929: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Idiomarina loihiensis L2TR Gene: IL0869: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
ivdD	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0657: Enoyl-CoA hydratase (EC 4.2.1.17)	Alteromonadales bacterium TW-7 Gene: ATW7_12603: Enoyl-CoA hydratase (EC 4.2.1.17)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1457: Enoyl-CoA hydratase (EC 4.2.1.17)	Pseudoalteromonas tunicata D2 Gene: PTD2_19737: Enoyl-CoA hydratase (EC 4.2.1.17)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Enoyl-CoA hydratase (EC 4.2.1.17)
ivdE	Pseudoalteromonas atlantica T6c Gene: Patl_0950: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01906: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_12608: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1458: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Pseudoalteromonas tunicata D2 Gene: PTD2_19732: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Idiomarina baltica OS145 Gene: OS145_12934: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Idiomarina loihiensis L2TR Gene: IL0868: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
ivdF	Pseudoalteromonas atlantica T6c Gene: Patl_0951: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_3424: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Alteromonadales bacterium TW-7 Gene: ATW7_12613: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1459: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Pseudoalteromonas tunicata D2 Gene: PTD2_19727: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Idiomarina baltica OS145 Gene: OS145_12939: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	Idiomarina loihiensis L2TR Gene: IL0867: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
ivdG	Pseudoalteromonas atlantica T6c Gene: Patl_0952: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1608: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Alteromonadales bacterium TW-7 Gene: ATW7_12618: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1460: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Pseudoalteromonas tunicata D2 Gene: PTD2_19722: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Idiomarina baltica OS145 Gene: OS145_12944: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	Idiomarina loihiensis L2TR Gene: IL0866: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

CRON 3.
Patl_0524	Pseudoalteromonas atlantica T6c Gene: Patl_0524: hypothetical protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00720: hypothetical protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007037: hypothetical protein	Colwellia psychrerythraea 34H Gene: CPS_4953: hypothetical protein	* Alteromonadales bacterium TW-7 Site: position = -131 score = 5.80836 sequence = GTTTACGTAAACGTTAAC Gene: ATW7_03902: hypothetical protein	* Pseudoalteromonas haloplanktis TAC125 Site: position = -129 score = 4.57433 sequence = CTTTACTTAAAAGTTAAC Gene: PSHAa0586: hypothetical protein	* Pseudoalteromonas tunicata D2 Site: position = -140 score = 5.63759 sequence = GTTAACCTTTACGTAAAC Gene: PTD2_08574: hypothetical protein	Idiomarina baltica OS145 Gene: OS145_00185: hypothetical protein	Idiomarina loihiensis L2TR Gene: IL1179: hypothetical protein	hypothetical protein
Patl_0525	Pseudoalteromonas atlantica T6c Gene: Patl_0525: Sodium:solute symporter family protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00721: Sodium:solute symporter family protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007042: Sodium:solute symporter family protein	Colwellia psychrerythraea 34H Gene: CPS_4952: Sodium:solute symporter family protein	Alteromonadales bacterium TW-7 Gene: ATW7_03907: Sodium:solute symporter family protein	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0587: Sodium:solute symporter family protein	Pseudoalteromonas tunicata D2 Gene: PTD2_08579: Sodium:solute symporter family protein	Idiomarina baltica OS145 Gene: OS145_00190: Sodium:solute symporter family protein	Idiomarina loihiensis L2TR Gene: IL1178: Sodium:solute symporter family protein	Sodium:solute symporter family protein

CRON 4.
tyrP	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_05466: Tyrosine-specific transport protein (HAAAP family)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2117: Tyrosine-specific transport protein (HAAAP family)	* Pseudoalteromonas tunicata D2 Site: position = -54 score = 5.97662 sequence = CTTTACGTTTACGTTAAC Gene: PTD2_03281: Tyrosine-specific transport protein (HAAAP family)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Tyrosine-specific transport protein (HAAAP family)

CRON 5.
acdH	Pseudoalteromonas atlantica T6c Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Colwellia psychrerythraea 34H	* Alteromonadales bacterium TW-7 Site: position = -123 score = 5.3686 sequence = GTTTACGTTCGAGTAAAG Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -122 score = 6.17516 sequence = GTTTACGTTCACGTAAAG Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Pseudoalteromonas tunicata D2 Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

CRON 6.
gltB	Pseudoalteromonas atlantica T6c Gene: Patl_3748: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01631: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000995: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Colwellia psychrerythraea 34H Gene: CPS_4501: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	* Alteromonadales bacterium TW-7 Site: position = -277 score = 6.33074 sequence = GTTTACGTTTACGTAAAC Gene: ATW7_06903: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -291 score = 4.69771 sequence = GTTTACGTAAACTTACTC Site: position = -297 score = 6.33074 sequence = GTTTACGTTTACGTAAAC Gene: PTD2_10749: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Idiomarina baltica OS145 Gene: OS145_11374: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Idiomarina loihiensis L2TR Gene: IL1075: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)	Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
gltD	Pseudoalteromonas atlantica T6c Gene: Patl_3749: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01630: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100001000: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Colwellia psychrerythraea 34H Gene: CPS_4502: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Alteromonadales bacterium TW-7 Gene: ATW7_06908: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2 Gene: PTD2_10744: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Idiomarina baltica OS145 Gene: OS145_11379: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Idiomarina loihiensis L2TR Gene: IL1074: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)	Glutamate synthase [NADPH] small chain (EC 1.4.1.13)

CRON 7.
yciK	Pseudoalteromonas atlantica T6c Gene: Patl_2183: Oxidoreductase, short-chain dehydrogenase/reductase family	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01893: Oxidoreductase, short-chain dehydrogenase/reductase family	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006892: Oxidoreductase, short-chain dehydrogenase/reductase family	Colwellia psychrerythraea 34H Gene: CPS_1191: Oxidoreductase, short-chain dehydrogenase/reductase family	* Alteromonadales bacterium TW-7 Site: position = -110 score = 5.06466 sequence = GTTAAACTTAACGTAAAG Gene: ATW7_07484: Oxidoreductase, short-chain dehydrogenase/reductase family	* Pseudoalteromonas haloplanktis TAC125 Site: position = -110 score = 5.0993 sequence = GTTAAACTTAACGTAAAC Gene: PSHAa1343: Oxidoreductase, short-chain dehydrogenase/reductase family	* Pseudoalteromonas tunicata D2 Site: position = -80 score = 5.35348 sequence = GTTAAAGTTAACGTAAAC Gene: PTD2_18015: Oxidoreductase, short-chain dehydrogenase/reductase family	Idiomarina baltica OS145 Gene: OS145_11996: Oxidoreductase, short-chain dehydrogenase/reductase family	Idiomarina loihiensis L2TR Gene: IL1040: Oxidoreductase, short-chain dehydrogenase/reductase family	Oxidoreductase, short-chain dehydrogenase/reductase family

CRON 8.
ldh	Pseudoalteromonas atlantica T6c Gene: Patl_2995: Leucine dehydrogenase (EC 1.4.1.9)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02824: Leucine dehydrogenase (EC 1.4.1.9)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_2904: Leucine dehydrogenase (EC 1.4.1.9)	* Alteromonadales bacterium TW-7 Site: position = -238 score = 5.33437 sequence = GCTAACGTAAACGTAAAG Site: position = -244 score = 5.31146 sequence = GGTTACGCTAACGTAAAC Gene: ATW7_06658: Leucine dehydrogenase (EC 1.4.1.9)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -68 score = 4.99623 sequence = GTTCACGTAAGCGTAAGC Site: position = -74 score = 5.34753 sequence = CGTTACGTTCACGTAAGC Gene: PSHAa1167: Leucine dehydrogenase (EC 1.4.1.9)	* Pseudoalteromonas tunicata D2 Site: position = -246 score = 6.10686 sequence = TTTTACGTTAACGTAAAC Gene: PTD2_18100: Leucine dehydrogenase (EC 1.4.1.9)	* Idiomarina baltica OS145 Site: position = -140 score = 5.25836 sequence = GTTGCCGTTTACGTCAAC Gene: OS145_06047: Leucine dehydrogenase (EC 1.4.1.9)	Idiomarina loihiensis L2TR Gene: IL1314: Leucine dehydrogenase (EC 1.4.1.9)	Leucine dehydrogenase (EC 1.4.1.9)

CRON 9.
etfB	* Pseudoalteromonas atlantica T6c Site: position = -32 score = 5.27622 sequence = GTTGACGTGTACGTCAAC Gene: Patl_2146: Electron transfer flavoprotein, beta subunit	* Alteromonas macleodii 'Deep ecotype' Site: position = -228 score = 6.18477 sequence = GTTTACGTTAACGTCAAC Site: position = -266 score = 5.87488 sequence = GTTGACGTTTACGTCAAC Gene: MADE_00996: Electron transfer flavoprotein, beta subunit	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006522: Electron transfer flavoprotein, beta subunit	* Colwellia psychrerythraea 34H Site: position = -77 score = 5.67881 sequence = GTTGACGTTGACGTAAAG Site: position = -83 score = 5.00218 sequence = GTTTACGTTGACGTTGAC Gene: CPS_3687: Electron transfer flavoprotein, beta subunit	* Alteromonadales bacterium TW-7 Site: position = -47 score = 4.98934 sequence = GTTGACGTACACGTTAGG Site: position = -96 score = 5.87488 sequence = GTTGACGTTTACGTCAAC Gene: ATW7_13178: Electron transfer flavoprotein, beta subunit	* Pseudoalteromonas haloplanktis TAC125 Site: position = -47 score = 4.80172 sequence = GTTGACGTGCACGTCAGC Site: position = -96 score = 4.80804 sequence = GTTGATGTTTACGTCAAT Gene: PSHAa1618: Electron transfer flavoprotein, beta subunit	Pseudoalteromonas tunicata D2 Gene: PTD2_19467: Electron transfer flavoprotein, beta subunit	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Electron transfer flavoprotein, beta subunit
etfA	Pseudoalteromonas atlantica T6c Gene: Patl_2145: Electron transfer flavoprotein, alpha subunit	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00997: Electron transfer flavoprotein, alpha subunit	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006527: Electron transfer flavoprotein, alpha subunit	Colwellia psychrerythraea 34H Gene: CPS_3688: Electron transfer flavoprotein, alpha subunit	Alteromonadales bacterium TW-7 Gene: ATW7_13173: Electron transfer flavoprotein, alpha subunit	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1617: Electron transfer flavoprotein, alpha subunit	Pseudoalteromonas tunicata D2 Gene: PTD2_19472: Electron transfer flavoprotein, alpha subunit	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Electron transfer flavoprotein, alpha subunit

CRON 10.
bkdA1	Pseudoalteromonas atlantica T6c Gene: Patl_2036: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01954: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -235 score = 4.92769 sequence = GTTAACGTGAAGGTAAAG Gene: CPS_1582: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	* Alteromonadales bacterium TW-7 Site: position = -134 score = 6.34662 sequence = CTTTACGTTAACGTAAAG Gene: ATW7_13253: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -132 score = 6.34662 sequence = CTTTACGTTAACGTAAAG Gene: PSHAa1632: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	* Pseudoalteromonas tunicata D2 Site: position = -224 score = 6.37434 sequence = GTTTACGTTAACGTAAAG Gene: PTD2_19360: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	* Idiomarina baltica OS145 Site: position = -61 score = 5.6634 sequence = CTTTACGTAAAGGTAAAG Gene: OS145_01872: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	* Idiomarina loihiensis L2TR Site: position = -61 score = 5.6634 sequence = CTTTACGTAAAGGTAAAG Gene: IL1680: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)	Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
bkdA2	Pseudoalteromonas atlantica T6c Gene: Patl_2037: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01955: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1583: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Alteromonadales bacterium TW-7 Gene: ATW7_13248: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1631: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Pseudoalteromonas tunicata D2 Gene: PTD2_19365: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Idiomarina baltica OS145 Gene: OS145_01867: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Idiomarina loihiensis L2TR Gene: IL1679: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)	Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
bkdB	Pseudoalteromonas atlantica T6c Gene: Patl_2038: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01956: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1584: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Alteromonadales bacterium TW-7 Gene: ATW7_13243: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa1630: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Pseudoalteromonas tunicata D2 Gene: PTD2_19370: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Idiomarina baltica OS145 Gene: OS145_01862: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Idiomarina loihiensis L2TR Gene: IL1678: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LiuR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --