Orthologous regulated operons containing ivdB gene

Properties
Regulog:	LiuR - Alteromonadales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Phylum:	Proteobacteria/gamma

Built upon 65 sites [see more]

Orthologous operons
Operon	Position	Score	Sequence	Locus Tag of the First Gene
Alteromonadales bacterium TW-7
Position: -116 Score: 5.98114 Sequence: GTTGACGTTAGCGTAAAC Locus tag: ATW7_12588 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: ATW7_12593 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: ATW7_12598 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: ATW7_12603 Name: ivdD Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: ATW7_12608 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: ATW7_12613 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: ATW7_12618 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG	-116	6	GTTGACGTTAGCGTAAAC	ATW7_12588
Pseudoalteromonas atlantica T6c
Position: -102 Score: 5.36091 Sequence: ACTGACGTTAACGTAAAG Locus tag: Patl_0948 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: Patl_0949 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: Patl_0950 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: Patl_0951 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: Patl_0952 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdB-ivdC-ivdE-ivdF-ivdG	-102	5.4	ACTGACGTTAACGTAAAG	Patl_0948
Pseudoalteromonas haloplanktis TAC125
Position: -113 Score: 5.29397 Sequence: ATTTACGTTGGCGTAAAC Locus tag: PSHAa1454 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: PSHAa1455 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: PSHAa1456 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: PSHAa1457 Name: ivdD Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: PSHAa1458 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: PSHAa1459 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: PSHAa1460 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG	-113	5.3	ATTTACGTTGGCGTAAAC	PSHAa1454
Pseudoalteromonas tunicata D2
Position: -66 Score: 5.29397 Sequence: ATTTACGTTGGCGTAAAC Locus tag: PTD2_19752 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: PTD2_19747 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: PTD2_19742 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: PTD2_19737 Name: ivdD Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: PTD2_19732 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: PTD2_19727 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: PTD2_19722 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG	-66	5.3	ATTTACGTTGGCGTAAAC	PTD2_19752