Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Alteromonadales bacterium TW-7

Properties
Regulator type: Transcription factor
TF locus tag: ATW7_12583
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Alteromonadales
Statistics of regulated genes:
- Genes 28
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -191
Score: 4.7
Sequence: CCTAACGTGTACGTCAAC
Position: -142
Score: 5.7
Sequence: GTTGACGTAAACGTCAAC
Locus tag: ATW7_13183
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
ATW7_13183
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -59
Score: 6
Sequence: CTTTACCTTTACGTAAAC
Locus tag: ATW7_12583
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: ATW7_12578
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: ATW7_12573
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: ATW7_12568
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: ATW7_12563
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: ATW7_12558
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: ATW7_12553
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: ATW7_12548
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
ATW7_12583
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
ATW7_12578
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
ATW7_12573
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
ATW7_12568
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
ATW7_12563
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
ATW7_12558
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
ATW7_12553
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
ATW7_12548
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -116
Score: 6
Sequence: GTTGACGTTAGCGTAAAC
Locus tag: ATW7_12588
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: ATW7_12593
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: ATW7_12598
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: ATW7_12603
Name: ivdD
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: ATW7_12608
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: ATW7_12613
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: ATW7_12618
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ATW7_12588
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
ATW7_12593
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
ATW7_12598
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
ATW7_12603
ivdD
Enoyl-CoA hydratase (EC 4.2.1.17)
ATW7_12608
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
ATW7_12613
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
ATW7_12618
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -131
Score: 5.8
Sequence: GTTTACGTAAACGTTAAC
Locus tag: ATW7_03902
Name: null
Funciton: hypothetical protein
Locus tag: ATW7_03907
Name: null
Funciton: Sodium:solute symporter family protein
ATW7_03902
hypothetical protein
ATW7_03907
Sodium:solute symporter family protein
Position: -123
Score: 5.4
Sequence: GTTTACGTTCGAGTAAAG
Locus tag: ATW7_02937
Name: acdH
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
ATW7_02937
acdH
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -277
Score: 6.3
Sequence: GTTTACGTTTACGTAAAC
Locus tag: ATW7_06903
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: ATW7_06908
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
ATW7_06903
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
ATW7_06908
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -110
Score: 5.1
Sequence: GTTAAACTTAACGTAAAG
Locus tag: ATW7_07484
Name: yciK
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family
ATW7_07484
yciK
Oxidoreductase, short-chain dehydrogenase/reductase family
Position: -244
Score: 5.3
Sequence: GGTTACGCTAACGTAAAC
Position: -238
Score: 5.3
Sequence: GCTAACGTAAACGTAAAG
Locus tag: ATW7_06658
Name: ldh
Funciton: Leucine dehydrogenase (EC 1.4.1.9)
ATW7_06658
ldh
Leucine dehydrogenase (EC 1.4.1.9)
Position: -96
Score: 5.9
Sequence: GTTGACGTTTACGTCAAC
Position: -47
Score: 5
Sequence: GTTGACGTACACGTTAGG
Locus tag: ATW7_13178
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: ATW7_13173
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
ATW7_13178
etfB
Electron transfer flavoprotein, beta subunit
ATW7_13173
etfA
Electron transfer flavoprotein, alpha subunit
Position: -134
Score: 6.3
Sequence: CTTTACGTTAACGTAAAG
Locus tag: ATW7_13253
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: ATW7_13248
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: ATW7_13243
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
ATW7_13253
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
ATW7_13248
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
ATW7_13243
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
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