Profile of regulator LiuR in Alteromonadales
Properties
| Regulator family: |
MerR |
| Regulation mode: |
repressor |
| Biological process: |
Branched-chain amino acid degradation |
| Effector: |
|
| Regulog: |
LiuR - Alteromonadales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Pseudoalteromonas atlantica T6c
|
|
Patl_2924 |
liuR |
-86 |
6.1 |
CTTTACGTAAACGTAAAG |
|
Patl_2924 |
liuR |
-109 |
5.7 |
CTTTACCTTTACGTTAAG |
|
Patl_0948 |
ivdB |
-102 |
5.4 |
ACTGACGTTAACGTAAAG |
|
Patl_2923 |
ivdA |
-188 |
5.2 |
CTTAACGTAAAGGTAAAG |
|
Patl_2923 |
ivdA |
-211 |
6.3 |
CTTTACGTTTACGTAAAG |
|
Patl_2146 |
etfB |
-32 |
5.3 |
GTTGACGTGTACGTCAAC |
|
Alteromonas macleodii 'Deep ecotype'
|
|
MADE_02411 |
liuR |
-142 |
5.5 |
ATTAACGTTAACGTAAAC |
|
MADE_02411 |
liuR |
-164 |
5.9 |
CTTTACCTTAACGTAAAA |
|
MADE_00995 |
etfD |
-138 |
5.7 |
GTTGACGTAAACGTCAAC |
|
MADE_00995 |
etfD |
-176 |
6.2 |
GTTGACGTTAACGTAAAC |
|
MADE_01905 |
ivdC |
-32 |
5.9 |
CTTTACGTTTACGTAAGG |
|
MADE_02410 |
ivdA |
-76 |
5.7 |
TTTTACGTTAAGGTAAAG |
|
MADE_02410 |
ivdA |
-98 |
5.6 |
GTTTACGTTAACGTTAAT |
|
MADE_00996 |
etfB |
-228 |
6.2 |
GTTTACGTTAACGTCAAC |
|
MADE_00996 |
etfB |
-266 |
5.9 |
GTTGACGTTTACGTCAAC |
|
Colwellia psychrerythraea 34H
|
|
CPS_1604 |
liuR |
-73 |
6.4 |
CTTTACGTTAACGTAAAC |
|
CPS_1604 |
liuR |
-67 |
4.7 |
GTTAACGTAAACTTAATA |
|
CPS_3686 |
etfD |
-197 |
4.8 |
GTCAACGTCAACGTAAAC |
|
CPS_3686 |
etfD |
-203 |
5.6 |
CTTTACGTCAACGTCAAC |
|
CPS_1605 |
ivdA |
-91 |
4.8 |
GTTGACGTAAACTTAAAT |
|
CPS_3687 |
etfB |
-77 |
5.7 |
GTTGACGTTGACGTAAAG |
|
CPS_3687 |
etfB |
-83 |
5 |
GTTTACGTTGACGTTGAC |
|
CPS_1582 |
bkdA1 |
-235 |
4.9 |
GTTAACGTGAAGGTAAAG |
|
Alteromonadales bacterium TW-7
|
|
ATW7_12583 |
liuR |
-59 |
6 |
CTTTACCTTTACGTAAAC |
|
ATW7_13183 |
etfD |
-191 |
4.7 |
CCTAACGTGTACGTCAAC |
|
ATW7_13183 |
etfD |
-142 |
5.7 |
GTTGACGTAAACGTCAAC |
|
ATW7_12588 |
ivdA |
-116 |
6 |
GTTGACGTTAGCGTAAAC |
|
ATW7_03902 |
null |
-131 |
5.8 |
GTTTACGTAAACGTTAAC |
|
ATW7_02937 |
acdH |
-123 |
5.4 |
GTTTACGTTCGAGTAAAG |
|
ATW7_06903 |
gltB |
-277 |
6.3 |
GTTTACGTTTACGTAAAC |
|
ATW7_07484 |
yciK |
-110 |
5.1 |
GTTAAACTTAACGTAAAG |
|
ATW7_06658 |
ldh |
-238 |
5.3 |
GCTAACGTAAACGTAAAG |
|
ATW7_06658 |
ldh |
-244 |
5.3 |
GGTTACGCTAACGTAAAC |
|
ATW7_13178 |
etfB |
-47 |
5 |
GTTGACGTACACGTTAGG |
|
ATW7_13178 |
etfB |
-96 |
5.9 |
GTTGACGTTTACGTCAAC |
|
ATW7_13253 |
bkdA1 |
-134 |
6.3 |
CTTTACGTTAACGTAAAG |
|
Pseudoalteromonas haloplanktis TAC125
|
|
PSHAa1453 |
liuR |
-60 |
6 |
CTTTACCTTTACGTAAAC |
|
PSHAa1619 |
etfD |
-141 |
4.6 |
ATTGACGTAAACATCAAC |
|
PSHAa1619 |
etfD |
-190 |
4.8 |
GCTGACGTGCACGTCAAC |
|
PSHAa1454 |
ivdA |
-113 |
5.3 |
ATTTACGTTGGCGTAAAC |
|
PSHAa0586 |
null |
-129 |
4.6 |
CTTTACTTAAAAGTTAAC |
|
PSHAb0374 |
acdH |
-122 |
6.2 |
GTTTACGTTCACGTAAAG |
|
PSHAa1343 |
yciK |
-110 |
5.1 |
GTTAAACTTAACGTAAAC |
|
PSHAa1167 |
ldh |
-68 |
5 |
GTTCACGTAAGCGTAAGC |
|
PSHAa1167 |
ldh |
-74 |
5.3 |
CGTTACGTTCACGTAAGC |
|
PSHAa1618 |
etfB |
-47 |
4.8 |
GTTGACGTGCACGTCAGC |
|
PSHAa1618 |
etfB |
-96 |
4.8 |
GTTGATGTTTACGTCAAT |
|
PSHAa1632 |
bkdA1 |
-132 |
6.3 |
CTTTACGTTAACGTAAAG |
|
Pseudoalteromonas tunicata D2
|
|
PTD2_19430 |
etfD |
-104 |
5.7 |
GTTGACGTAAACGTCAAC |
|
PTD2_19757 |
liuR |
-55 |
6 |
CTTTACCTTTACGTAAAC |
|
PTD2_19752 |
ivdA |
-66 |
5.3 |
ATTTACGTTGGCGTAAAC |
|
PTD2_08574 |
null |
-140 |
5.6 |
GTTAACCTTTACGTAAAC |
|
PTD2_03281 |
tyrP |
-54 |
6 |
CTTTACGTTTACGTTAAC |
|
PTD2_10749 |
gltB |
-291 |
4.7 |
GTTTACGTAAACTTACTC |
|
PTD2_10749 |
gltB |
-297 |
6.3 |
GTTTACGTTTACGTAAAC |
|
PTD2_18015 |
yciK |
-80 |
5.4 |
GTTAAAGTTAACGTAAAC |
|
PTD2_18100 |
ldh |
-246 |
6.1 |
TTTTACGTTAACGTAAAC |
|
PTD2_19360 |
bkdA1 |
-224 |
6.4 |
GTTTACGTTAACGTAAAG |
|
Idiomarina baltica OS145
|
|
OS145_12909 |
liuR |
-61 |
6.4 |
CTTTACGTTAACGTAAAC |
|
OS145_12914 |
ivdA |
-34 |
6.4 |
GTTTACGTTAACGTAAAG |
|
OS145_06047 |
ldh |
-140 |
5.3 |
GTTGCCGTTTACGTCAAC |
|
OS145_01872 |
bkdA1 |
-61 |
5.7 |
CTTTACGTAAAGGTAAAG |
|
Idiomarina loihiensis L2TR
|
|
IL0873 |
liuR |
-62 |
6.4 |
CTTTACGTTAACGTAAAC |
|
IL0872 |
ivdA |
-34 |
6.4 |
GTTTACGTTAACGTAAAG |
|
IL1680 |
bkdA1 |
-61 |
5.7 |
CTTTACGTAAAGGTAAAG |
Export
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Regulatory Sites
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