Regulon of LiuR in Alteromonas macleodii 'Deep ecotype'

Properties
Regulator type:	Transcription factor
TF locus tag:	MADE_02411
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Alteromonadales
Statistics of regulated genes:
- Genes	12
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 65 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Alteromonadales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -164 Score: 5.9 Sequence: CTTTACCTTAACGTAAAA Position: -142 Score: 5.5 Sequence: ATTAACGTTAACGTAAAC Locus tag: MADE_02411 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: MADE_02412 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Locus tag: MADE_02413 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: MADE_02414 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: MADE_02415 Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Locus tag: MADE_02416 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	MADE_02411	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	MADE_02412	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
	MADE_02413	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	MADE_02414	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	MADE_02415	liuD	Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
	MADE_02416	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -176 Score: 6.2 Sequence: GTTGACGTTAACGTAAAC Position: -138 Score: 5.7 Sequence: GTTGACGTAAACGTCAAC Locus tag: MADE_00995 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	MADE_00995	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -32 Score: 5.9 Sequence: CTTTACGTTTACGTAAGG Locus tag: MADE_01905 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: MADE_01906 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	MADE_01905	ivdC	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	MADE_01906	ivdE	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Position: -98 Score: 5.6 Sequence: GTTTACGTTAACGTTAAT Position: -76 Score: 5.7 Sequence: TTTTACGTTAAGGTAAAG Locus tag: MADE_02410 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	MADE_02410	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -266 Score: 5.9 Sequence: GTTGACGTTTACGTCAAC Position: -228 Score: 6.2 Sequence: GTTTACGTTAACGTCAAC Locus tag: MADE_00996 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: MADE_00997 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	MADE_00996	etfB	Electron transfer flavoprotein, beta subunit
	MADE_00997	etfA	Electron transfer flavoprotein, alpha subunit

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD