Regulon of LiuR in Idiomarina loihiensis L2TR
| Regulator type: | Transcription factor |
| TF locus tag: | IL0873 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Alteromonadales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -34
Score: 6.4 Sequence: GTTTACGTTAACGTAAAG
Locus tag: IL0872
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
|||
|
ivdA
|
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
|
||
|
Position: -62
Score: 6.4 Sequence: CTTTACGTTAACGTAAAC
Locus tag: IL0873
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: IL0874
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: IL0875
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: IL0876
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: IL0877
Name: liuD Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: IL0878
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: IL0879
Name: aacS Funciton: Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
Locus tag: IL0880
Name: IL0880 Funciton: Sensory box/GGDEF family protein
Locus tag: IL0881
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
|||
|
liuR
|
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
|
||
|
liuA
|
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
|
||
|
liuB
|
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
|
||
|
liuC
|
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
|
||
|
liuD
|
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
|
||
|
liuE
|
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
|
||
|
aacS
|
Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16)
|
||
|
IL0880
|
Sensory box/GGDEF family protein
|
||
|
etfD
|
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
|
||
|
Position: -61
Score: 5.7 Sequence: CTTTACGTAAAGGTAAAG
Locus tag: IL1680
Name: bkdA1 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: IL1679
Name: bkdA2 Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: IL1678
Name: bkdB Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) |
|||
|
bkdA1
|
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
|
||
|
bkdA2
|
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
|
||
|
bkdB
|
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |