Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Colwellia psychrerythraea 34H

Properties
Regulator type: Transcription factor
TF locus tag: CPS_1604
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Alteromonadales
Statistics of regulated genes:
- Genes 15
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 65 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -73
Score: 6.4
Sequence: CTTTACGTTAACGTAAAC
Position: -67
Score: 4.7
Sequence: GTTAACGTAAACTTAATA
Locus tag: CPS_1604
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: CPS_1603
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: CPS_1602
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: CPS_1601
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: CPS_1600
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: CPS_1599
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: CPS_1598
Name: liuF
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
Locus tag: CPS_1597
Name: liuG
Funciton: Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
CPS_1604
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
CPS_1603
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
CPS_1602
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
CPS_1601
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
CPS_1600
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
CPS_1599
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
CPS_1598
liuF
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5)
CPS_1597
liuG
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5)
Position: -203
Score: 5.6
Sequence: CTTTACGTCAACGTCAAC
Position: -197
Score: 4.8
Sequence: GTCAACGTCAACGTAAAC
Locus tag: CPS_3686
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
CPS_3686
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -91
Score: 4.8
Sequence: GTTGACGTAAACTTAAAT
Locus tag: CPS_1605
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
CPS_1605
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Position: -83
Score: 5
Sequence: GTTTACGTTGACGTTGAC
Position: -77
Score: 5.7
Sequence: GTTGACGTTGACGTAAAG
Locus tag: CPS_3687
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: CPS_3688
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
CPS_3687
etfB
Electron transfer flavoprotein, beta subunit
CPS_3688
etfA
Electron transfer flavoprotein, alpha subunit
Position: -235
Score: 4.9
Sequence: GTTAACGTGAAGGTAAAG
Locus tag: CPS_1582
Name: bkdA1
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Locus tag: CPS_1583
Name: bkdA2
Funciton: Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
Locus tag: CPS_1584
Name: bkdB
Funciton: Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
CPS_1582
bkdA1
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
CPS_1583
bkdA2
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4)
CPS_1584
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168)
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