Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadR in Pseudoalteromonas atlantica T6c

Properties
Regulator type: Transcription factor
TF locus tag: Patl_2794
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Regulog: FadR - Alteromonadales
Statistics of regulated genes:
- Genes 7
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 39 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -199
Score: 4.4
Sequence: AACTGGCATGACCAGTT
Locus tag: Patl_0201
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Patl_0202
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

Position: -46
Score: 5.6
Sequence: TACAGGTCAGACCACTT
Locus tag: Patl_1663
Name: fadI
Funciton: FadI component of anaerobic fatty acid oxidation complex
Locus tag: Patl_1664
Name: fadJ
Funciton: FadJ component of anaerobic fatty acid oxidation complex
fadI
FadI component of anaerobic fatty acid oxidation complex
fadJ
FadJ component of anaerobic fatty acid oxidation complex

Position: -31
Score: 5.3
Sequence: CTCTGGTCTGACCTCTA
Locus tag: Patl_2492
Name: fadE
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -75
Score: 4.9
Sequence: AAGTGGTTAGACCAGTT
Locus tag: Patl_1408
Name: acdB
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdB
Acyl-CoA dehydrogenase (EC 1.3.99.3)

Position: -31
Score: 4.8
Sequence: AACTGGTCAGATGAGCG
Locus tag: Patl_1688
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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