Regulon of FadR in Pseudoalteromonas atlantica T6c

Properties
Regulator type:	Transcription factor
TF locus tag:	Patl_2794
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Alteromonadales
Statistics of regulated genes:
- Genes	7
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -199 Score: 4.4 Sequence: AACTGGCATGACCAGTT Locus tag: Patl_0201 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Locus tag: Patl_0202 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	Patl_0201	fadB	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	Patl_0202	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -46 Score: 5.6 Sequence: TACAGGTCAGACCACTT Locus tag: Patl_1663 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: Patl_1664 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	Patl_1663	fadI	FadI component of anaerobic fatty acid oxidation complex
	Patl_1664	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -31 Score: 5.3 Sequence: CTCTGGTCTGACCTCTA Locus tag: Patl_2492 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Patl_2492	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -75 Score: 4.9 Sequence: AAGTGGTTAGACCAGTT Locus tag: Patl_1408 Name: acdB Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Patl_1408	acdB	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -31 Score: 4.8 Sequence: AACTGGTCAGATGAGCG Locus tag: Patl_1688 Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Patl_1688	fadE2	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD