Regulog FadR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 7 | 5 |
| Alteromonas macleodii 'Deep ecotype' | 8 | 6 |
| Glaciecola sp. HTCC2999 | 6 | 4 |
| Colwellia psychrerythraea 34H | 4 | 3 |
| Alteromonadales bacterium TW-7 | 8 | 6 |
| Pseudoalteromonas haloplanktis TAC125 | 6 | 5 |
| Pseudoalteromonas tunicata D2 | 6 | 5 |
| Idiomarina baltica OS145 | 3 | 2 |
| Idiomarina loihiensis L2TR | 4 | 3 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| COG0596 |
Gene: Patl_2805: Predicted hydrolase/acyltransferase |
Gene: MADE_01136: Predicted hydrolase/acyltransferase |
Gene: GHTCC_010100007547: Predicted hydrolase/acyltransferase |
Gene: CPS_1187: Predicted hydrolase/acyltransferase |
*
Alteromonadales bacterium TW-7 Site: position = -54 score = 4.65681 sequence = TAGTGGTCTGACAACTT Gene: ATW7_00335: Predicted hydrolase/acyltransferase |
Gene: PSHAb0501: Predicted hydrolase/acyltransferase |
Gene: PTD2_02226: Predicted hydrolase/acyltransferase |
Gene: OS145_10280: Predicted hydrolase/acyltransferase |
Gene: IL1828: Predicted hydrolase/acyltransferase |
Predicted hydrolase/acyltransferase |
| fadD |
Gene: Patl_2804: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -79 score = 4.21074 sequence = AAGTTATCAGACCAGTT Gene: MADE_01137: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
|
Gene: CPS_1189: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: ATW7_00340: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: PSHAb0502: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: PTD2_02221: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: OS145_10285: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
*
Idiomarina loihiensis L2TR Site: position = -67 score = 4.02442 sequence = AACTGGTCGGATATGCG Gene: IL1827: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 2. | ||||||||||
| fadH |
Gene: Patl_2400: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
Gene: MADE_03303: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
Gene: GHTCC_010100003019: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
*
Colwellia psychrerythraea 34H Site: position = -30 score = 4.68473 sequence = AACTGGTACGACCAATA Gene: CPS_0925: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
*
Alteromonadales bacterium TW-7 Site: position = -30 score = 4.80683 sequence = CACAGGTTAGACCAGTT Gene: ATW7_07132: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -18 score = 4.80683 sequence = CACAGGTTAGACCAGTT Gene: PSHAa1410: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
*
Pseudoalteromonas tunicata D2 Site: position = -33 score = 4.66776 sequence = CAGAGGTATGACCAGTA Gene: PTD2_19952: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
Gene: OS145_10515: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
Gene: IL1748: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
| CRON 3. | ||||||||||
| acdB |
*
Pseudoalteromonas atlantica T6c Site: position = -75 score = 4.86669 sequence = AAGTGGTTAGACCAGTT Gene: Patl_1408: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
|
*
Colwellia psychrerythraea 34H Site: position = -70 score = 4.63235 sequence = TAGTGGTATGACCAGTG Gene: CPS_2263: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
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|
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Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 4. | ||||||||||
| fadI |
*
Pseudoalteromonas atlantica T6c Site: position = -46 score = 5.58064 sequence = TACAGGTCAGACCACTT Gene: Patl_1663: FadI component of anaerobic fatty acid oxidation complex |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -65 score = 5.58064 sequence = TACAGGTCAGACCACTT Gene: MADE_02701: FadI component of anaerobic fatty acid oxidation complex |
*
Glaciecola sp. HTCC2999 Site: position = -100 score = 4.78772 sequence = TAGAGGTCGGACCACTG Gene: GHTCC_010100010338: FadI component of anaerobic fatty acid oxidation complex |
*
Colwellia psychrerythraea 34H Site: position = -55 score = 5.64049 sequence = AAGAGGTCAGACCTCTT Gene: CPS_3157: FadI component of anaerobic fatty acid oxidation complex |
*
Alteromonadales bacterium TW-7 Site: position = -32 score = 5.54633 sequence = AACAGGTCAGACCTGTC Gene: ATW7_05611: FadI component of anaerobic fatty acid oxidation complex |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -33 score = 5.54633 sequence = AACAGGTCAGACCTGTC Gene: PSHAa0966: FadI component of anaerobic fatty acid oxidation complex |
*
Pseudoalteromonas tunicata D2 Site: position = -32 score = 5.69918 sequence = AACAGGTCAGACCTGTA Gene: PTD2_11739: FadI component of anaerobic fatty acid oxidation complex |
*
Idiomarina baltica OS145 Site: position = -48 score = 4.78213 sequence = GTGTGGTCAGACCAGTA Gene: OS145_12280: FadI component of anaerobic fatty acid oxidation complex |
*
Idiomarina loihiensis L2TR Site: position = -42 score = 5.14641 sequence = TTGTGGTCAGACCAGTA Gene: IL0994: FadI component of anaerobic fatty acid oxidation complex |
FadI component of anaerobic fatty acid oxidation complex |
| fadJ |
Gene: Patl_1664: FadJ component of anaerobic fatty acid oxidation complex |
Gene: MADE_02700: FadJ component of anaerobic fatty acid oxidation complex |
Gene: GHTCC_010100010333: FadJ component of anaerobic fatty acid oxidation complex |
Gene: CPS_3156: FadJ component of anaerobic fatty acid oxidation complex |
Gene: ATW7_05616: FadJ component of anaerobic fatty acid oxidation complex |
Gene: PSHAa0967: FadJ component of anaerobic fatty acid oxidation complex |
Gene: PTD2_11734: FadJ component of anaerobic fatty acid oxidation complex |
Gene: OS145_12285: FadJ component of anaerobic fatty acid oxidation complex |
Gene: IL0993: FadJ component of anaerobic fatty acid oxidation complex |
FadJ component of anaerobic fatty acid oxidation complex |
| CRON 5. | ||||||||||
| fadB |
*
Pseudoalteromonas atlantica T6c Site: position = -199 score = 4.37768 sequence = AACTGGCATGACCAGTT Gene: Patl_0201: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -174 score = 3.81714 sequence = AAGTCATCGGACCACTA Gene: MADE_03736: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Glaciecola sp. HTCC2999 Site: position = -67 score = 4.41907 sequence = TACTTGTAAGACCAGTT Gene: GHTCC_010100011184: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: CPS_0393: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: ATW7_16353: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: PSHAa0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: PTD2_05090: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: OS145_03250: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: IL0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| fadA |
Gene: Patl_0202: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: MADE_03737: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: GHTCC_010100011179: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: CPS_0392: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
2
Alteromonadales bacterium TW-7 Gene: ATW7_16348: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Gene: ATW7_16343: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: PSHAa0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: PTD2_05095: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: OS145_03255: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: IL0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| CRON 6. | ||||||||||
| fadE |
*
Pseudoalteromonas atlantica T6c Site: position = -31 score = 5.29599 sequence = CTCTGGTCTGACCTCTA Gene: Patl_2492: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -97 score = 4.53698 sequence = TGCTGGTCTGACCTCGA Gene: MADE_02152: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Glaciecola sp. HTCC2999 Site: position = -27 score = 4.62532 sequence = ATCTGGTCTGACCATCA Gene: GHTCC_010100006812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: CPS_2265: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Alteromonadales bacterium TW-7 Site: position = -30 score = 5.14081 sequence = AGGTGGTCTGACCTCTA Gene: ATW7_08866: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -31 score = 5.14081 sequence = AGGTGGTCTGACCTCTA Gene: PSHAa1952: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Pseudoalteromonas tunicata D2 Site: position = -131 score = 5.5591 sequence = TAGTGGTCAGACCTCTA Gene: PTD2_22672: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Idiomarina baltica OS145 Site: position = -33 score = 5.72463 sequence = TACTGGTCAGACCTCTA Gene: OS145_01812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Idiomarina loihiensis L2TR Site: position = -34 score = 5.49247 sequence = CACTGGTCAGACCTCCA Gene: IL1665: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 7. | ||||||||||
| fadE2 |
*
Pseudoalteromonas atlantica T6c Site: position = -31 score = 4.84986 sequence = AACTGGTCAGATGAGCG Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -28 score = 4.84986 sequence = AACTGGTCAGATGAGCG Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Glaciecola sp. HTCC2999 Site: position = -59 score = 4.89865 sequence = AACTGGTCAGATGAGCT Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
*
Alteromonadales bacterium TW-7 Site: position = -22 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -22 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Pseudoalteromonas tunicata D2 Site: position = -20 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 8. | ||||||||||
| tesB |
Gene: Patl_2935: Acyl-CoA thioesterase |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -24 score = 3.66606 sequence = AACTCATCAGACCAGAC Gene: MADE_02424: Acyl-CoA thioesterase |
Gene: GHTCC_010100006927: Acyl-CoA thioesterase |
|
*
Alteromonadales bacterium TW-7 Site: position = -65 score = 4.63094 sequence = TACTGGCCTGACCAGTT Gene: ATW7_02822: Acyl-CoA thioesterase |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -67 score = 4.29953 sequence = TGCTGGTCTGACAAGTT Gene: PSHAb0355: Acyl-CoA thioesterase |
*
Pseudoalteromonas tunicata D2 Site: position = -66 score = 5.08517 sequence = AACTGGTCTGACCTTTT Gene: PTD2_02881: Acyl-CoA thioesterase |
Gene: OS145_06779: Acyl-CoA thioesterase |
Gene: IL0656: Acyl-CoA thioesterase |
Acyl-CoA thioesterase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |