Regulog FadR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	7	5
Alteromonas macleodii 'Deep ecotype'	8	6
Glaciecola sp. HTCC2999	6	4
Colwellia psychrerythraea 34H	4	3
Alteromonadales bacterium TW-7	8	6
Pseudoalteromonas haloplanktis TAC125	6	5
Pseudoalteromonas tunicata D2	6	5
Idiomarina baltica OS145	3	2
Idiomarina loihiensis L2TR	4	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
COG0596	Pseudoalteromonas atlantica T6c Gene: Patl_2805: Predicted hydrolase/acyltransferase	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01136: Predicted hydrolase/acyltransferase	Glaciecola sp. HTCC2999 Gene: GHTCC_010100007547: Predicted hydrolase/acyltransferase	Colwellia psychrerythraea 34H Gene: CPS_1187: Predicted hydrolase/acyltransferase	* Alteromonadales bacterium TW-7 Site: position = -54 score = 4.65681 sequence = TAGTGGTCTGACAACTT Gene: ATW7_00335: Predicted hydrolase/acyltransferase	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0501: Predicted hydrolase/acyltransferase	Pseudoalteromonas tunicata D2 Gene: PTD2_02226: Predicted hydrolase/acyltransferase	Idiomarina baltica OS145 Gene: OS145_10280: Predicted hydrolase/acyltransferase	Idiomarina loihiensis L2TR Gene: IL1828: Predicted hydrolase/acyltransferase	Predicted hydrolase/acyltransferase
fadD	Pseudoalteromonas atlantica T6c Gene: Patl_2804: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Alteromonas macleodii 'Deep ecotype' Site: position = -79 score = 4.21074 sequence = AAGTTATCAGACCAGTT Gene: MADE_01137: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_1189: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Alteromonadales bacterium TW-7 Gene: ATW7_00340: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAb0502: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_02221: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Idiomarina baltica OS145 Gene: OS145_10285: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	* Idiomarina loihiensis L2TR Site: position = -67 score = 4.02442 sequence = AACTGGTCGGATATGCG Gene: IL1827: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

CRON 2.
fadH	Pseudoalteromonas atlantica T6c Gene: Patl_2400: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03303: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100003019: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	* Colwellia psychrerythraea 34H Site: position = -30 score = 4.68473 sequence = AACTGGTACGACCAATA Gene: CPS_0925: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	* Alteromonadales bacterium TW-7 Site: position = -30 score = 4.80683 sequence = CACAGGTTAGACCAGTT Gene: ATW7_07132: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -18 score = 4.80683 sequence = CACAGGTTAGACCAGTT Gene: PSHAa1410: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	* Pseudoalteromonas tunicata D2 Site: position = -33 score = 4.66776 sequence = CAGAGGTATGACCAGTA Gene: PTD2_19952: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Idiomarina baltica OS145 Gene: OS145_10515: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	Idiomarina loihiensis L2TR Gene: IL1748: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)

CRON 3.
acdB	* Pseudoalteromonas atlantica T6c Site: position = -75 score = 4.86669 sequence = AAGTGGTTAGACCAGTT Gene: Patl_1408: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -70 score = 4.63235 sequence = TAGTGGTATGACCAGTG Gene: CPS_2263: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 4.
fadI	* Pseudoalteromonas atlantica T6c Site: position = -46 score = 5.58064 sequence = TACAGGTCAGACCACTT Gene: Patl_1663: FadI component of anaerobic fatty acid oxidation complex	* Alteromonas macleodii 'Deep ecotype' Site: position = -65 score = 5.58064 sequence = TACAGGTCAGACCACTT Gene: MADE_02701: FadI component of anaerobic fatty acid oxidation complex	* Glaciecola sp. HTCC2999 Site: position = -100 score = 4.78772 sequence = TAGAGGTCGGACCACTG Gene: GHTCC_010100010338: FadI component of anaerobic fatty acid oxidation complex	* Colwellia psychrerythraea 34H Site: position = -55 score = 5.64049 sequence = AAGAGGTCAGACCTCTT Gene: CPS_3157: FadI component of anaerobic fatty acid oxidation complex	* Alteromonadales bacterium TW-7 Site: position = -32 score = 5.54633 sequence = AACAGGTCAGACCTGTC Gene: ATW7_05611: FadI component of anaerobic fatty acid oxidation complex	* Pseudoalteromonas haloplanktis TAC125 Site: position = -33 score = 5.54633 sequence = AACAGGTCAGACCTGTC Gene: PSHAa0966: FadI component of anaerobic fatty acid oxidation complex	* Pseudoalteromonas tunicata D2 Site: position = -32 score = 5.69918 sequence = AACAGGTCAGACCTGTA Gene: PTD2_11739: FadI component of anaerobic fatty acid oxidation complex	* Idiomarina baltica OS145 Site: position = -48 score = 4.78213 sequence = GTGTGGTCAGACCAGTA Gene: OS145_12280: FadI component of anaerobic fatty acid oxidation complex	* Idiomarina loihiensis L2TR Site: position = -42 score = 5.14641 sequence = TTGTGGTCAGACCAGTA Gene: IL0994: FadI component of anaerobic fatty acid oxidation complex	FadI component of anaerobic fatty acid oxidation complex
fadJ	Pseudoalteromonas atlantica T6c Gene: Patl_1664: FadJ component of anaerobic fatty acid oxidation complex	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02700: FadJ component of anaerobic fatty acid oxidation complex	Glaciecola sp. HTCC2999 Gene: GHTCC_010100010333: FadJ component of anaerobic fatty acid oxidation complex	Colwellia psychrerythraea 34H Gene: CPS_3156: FadJ component of anaerobic fatty acid oxidation complex	Alteromonadales bacterium TW-7 Gene: ATW7_05616: FadJ component of anaerobic fatty acid oxidation complex	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0967: FadJ component of anaerobic fatty acid oxidation complex	Pseudoalteromonas tunicata D2 Gene: PTD2_11734: FadJ component of anaerobic fatty acid oxidation complex	Idiomarina baltica OS145 Gene: OS145_12285: FadJ component of anaerobic fatty acid oxidation complex	Idiomarina loihiensis L2TR Gene: IL0993: FadJ component of anaerobic fatty acid oxidation complex	FadJ component of anaerobic fatty acid oxidation complex

CRON 5.
fadB	* Pseudoalteromonas atlantica T6c Site: position = -199 score = 4.37768 sequence = AACTGGCATGACCAGTT Gene: Patl_0201: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Alteromonas macleodii 'Deep ecotype' Site: position = -174 score = 3.81714 sequence = AAGTCATCGGACCACTA Gene: MADE_03736: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Glaciecola sp. HTCC2999 Site: position = -67 score = 4.41907 sequence = TACTTGTAAGACCAGTT Gene: GHTCC_010100011184: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Colwellia psychrerythraea 34H Gene: CPS_0393: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Alteromonadales bacterium TW-7 Gene: ATW7_16353: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_05090: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Idiomarina baltica OS145 Gene: OS145_03250: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Idiomarina loihiensis L2TR Gene: IL0011: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA	Pseudoalteromonas atlantica T6c Gene: Patl_0202: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_03737: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Glaciecola sp. HTCC2999 Gene: GHTCC_010100011179: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Colwellia psychrerythraea 34H Gene: CPS_0392: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	2 Alteromonadales bacterium TW-7 Gene: ATW7_16348: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Gene: ATW7_16343: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Pseudoalteromonas tunicata D2 Gene: PTD2_05095: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Idiomarina baltica OS145 Gene: OS145_03255: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Idiomarina loihiensis L2TR Gene: IL0010: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)

CRON 6.
fadE	* Pseudoalteromonas atlantica T6c Site: position = -31 score = 5.29599 sequence = CTCTGGTCTGACCTCTA Gene: Patl_2492: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Alteromonas macleodii 'Deep ecotype' Site: position = -97 score = 4.53698 sequence = TGCTGGTCTGACCTCGA Gene: MADE_02152: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Glaciecola sp. HTCC2999 Site: position = -27 score = 4.62532 sequence = ATCTGGTCTGACCATCA Gene: GHTCC_010100006812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Colwellia psychrerythraea 34H Gene: CPS_2265: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Alteromonadales bacterium TW-7 Site: position = -30 score = 5.14081 sequence = AGGTGGTCTGACCTCTA Gene: ATW7_08866: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -31 score = 5.14081 sequence = AGGTGGTCTGACCTCTA Gene: PSHAa1952: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Pseudoalteromonas tunicata D2 Site: position = -131 score = 5.5591 sequence = TAGTGGTCAGACCTCTA Gene: PTD2_22672: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Idiomarina baltica OS145 Site: position = -33 score = 5.72463 sequence = TACTGGTCAGACCTCTA Gene: OS145_01812: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Idiomarina loihiensis L2TR Site: position = -34 score = 5.49247 sequence = CACTGGTCAGACCTCCA Gene: IL1665: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

CRON 7.
fadE2	* Pseudoalteromonas atlantica T6c Site: position = -31 score = 4.84986 sequence = AACTGGTCAGATGAGCG Gene: Patl_1688: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Alteromonas macleodii 'Deep ecotype' Site: position = -28 score = 4.84986 sequence = AACTGGTCAGATGAGCG Gene: MADE_02616: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Glaciecola sp. HTCC2999 Site: position = -59 score = 4.89865 sequence = AACTGGTCAGATGAGCT Gene: GHTCC_010100000785: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Colwellia psychrerythraea 34H	* Alteromonadales bacterium TW-7 Site: position = -22 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: ATW7_02937: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Pseudoalteromonas haloplanktis TAC125 Site: position = -22 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: PSHAb0374: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	* Pseudoalteromonas tunicata D2 Site: position = -20 score = 4.33789 sequence = ATCTGGTCGGATGAGTT Gene: PTD2_02811: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

CRON 8.
tesB	Pseudoalteromonas atlantica T6c Gene: Patl_2935: Acyl-CoA thioesterase	* Alteromonas macleodii 'Deep ecotype' Site: position = -24 score = 3.66606 sequence = AACTCATCAGACCAGAC Gene: MADE_02424: Acyl-CoA thioesterase	Glaciecola sp. HTCC2999 Gene: GHTCC_010100006927: Acyl-CoA thioesterase	Colwellia psychrerythraea 34H	* Alteromonadales bacterium TW-7 Site: position = -65 score = 4.63094 sequence = TACTGGCCTGACCAGTT Gene: ATW7_02822: Acyl-CoA thioesterase	* Pseudoalteromonas haloplanktis TAC125 Site: position = -67 score = 4.29953 sequence = TGCTGGTCTGACAAGTT Gene: PSHAb0355: Acyl-CoA thioesterase	* Pseudoalteromonas tunicata D2 Site: position = -66 score = 5.08517 sequence = AACTGGTCTGACCTTTT Gene: PTD2_02881: Acyl-CoA thioesterase	Idiomarina baltica OS145 Gene: OS145_06779: Acyl-CoA thioesterase	Idiomarina loihiensis L2TR Gene: IL0656: Acyl-CoA thioesterase	Acyl-CoA thioesterase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FadR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --