Regulon of FadR in Pseudoalteromonas haloplanktis TAC125
| Regulator type: | Transcription factor |
| TF locus tag: | PSHAa0838 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 5 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -31
Score: 5.1 Sequence: AGGTGGTCTGACCTCTA
Locus tag: PSHAa1952
Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Position: -33
Score: 5.5 Sequence: AACAGGTCAGACCTGTC
Locus tag: PSHAa0966
Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex
Locus tag: PSHAa0967
Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex |
|||
|
fadI
|
FadI component of anaerobic fatty acid oxidation complex
|
||
|
fadJ
|
FadJ component of anaerobic fatty acid oxidation complex
|
||
|
Position: -18
Score: 4.8 Sequence: CACAGGTTAGACCAGTT
Locus tag: PSHAa1410
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
|||
|
fadH
|
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
|
||
|
Position: -67
Score: 4.3 Sequence: TGCTGGTCTGACAAGTT
Locus tag: PSHAb0355
Name: tesB Funciton: Acyl-CoA thioesterase |
|||
|
tesB
|
Acyl-CoA thioesterase
|
||
|
Position: -22
Score: 4.3 Sequence: ATCTGGTCGGATGAGTT
Locus tag: PSHAb0374
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|||
|
fadE2
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |