Regulon of FadR in Alteromonas macleodii 'Deep ecotype'

Properties
Regulator type:	Transcription factor
TF locus tag:	MADE_01148
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Alteromonadales
Statistics of regulated genes:
- Genes	8
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 39 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - FadR
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -79 Score: 4.2 Sequence: AAGTTATCAGACCAGTT Locus tag: MADE_01137 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	MADE_01137	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -24 Score: 3.7 Sequence: AACTCATCAGACCAGAC Locus tag: MADE_02424 Name: tesB Funciton: Acyl-CoA thioesterase
	MADE_02424	tesB	Acyl-CoA thioesterase
Position: -174 Score: 3.8 Sequence: AAGTCATCGGACCACTA Locus tag: MADE_03736 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Locus tag: MADE_03737 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	MADE_03736	fadB	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	MADE_03737	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -65 Score: 5.6 Sequence: TACAGGTCAGACCACTT Locus tag: MADE_02701 Name: fadI Funciton: FadI component of anaerobic fatty acid oxidation complex Locus tag: MADE_02700 Name: fadJ Funciton: FadJ component of anaerobic fatty acid oxidation complex
	MADE_02701	fadI	FadI component of anaerobic fatty acid oxidation complex
	MADE_02700	fadJ	FadJ component of anaerobic fatty acid oxidation complex
Position: -97 Score: 4.5 Sequence: TGCTGGTCTGACCTCGA Locus tag: MADE_02152 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	MADE_02152	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -28 Score: 4.8 Sequence: AACTGGTCAGATGAGCG Locus tag: MADE_02616 Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	MADE_02616	fadE2	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD