Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Pseudoalteromonas atlantica T6c

Properties
Regulator type: Transcription factor
TF locus tag: Patl_4247
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Alteromonadales
Statistics of regulated genes:
- Genes 13
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 111 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -46
Score: 5.5
Sequence: GACTGTATATACTCACAGTT
Position: -25
Score: 4.9
Sequence: AACTGTATGAAACAACAGGC
Locus tag: Patl_4247
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -40
Score: 5.4
Sequence: CACTGTATATAAAACCACTA
Locus tag: Patl_2944
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvB
Holliday junction DNA helicase RuvB

Position: -63
Score: 5.6
Sequence: AACTGTACATAAAAACAGGT
Locus tag: Patl_1244
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
yebG
SOS regulon DNA damage-inducible protein

Position: -44
Score: 6.2
Sequence: TACTGTATGAATATACAGTA
Position: -31
Score: 4.1
Sequence: TACAGTAAAAATATACAACC
Locus tag: Patl_0036
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: Patl_0035
Name: imuB
Funciton: DNA polymerase-like protein PA0670
imuA
Predicted RecA/RadA recombinase
imuB
DNA polymerase-like protein PA0670

Position: -29
Score: 5.8
Sequence: AACTGTTTTTAAATACAGTT
Locus tag: Patl_0460
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -64
Score: 4.9
Sequence: GCATGTATTTTTATACAGTA
Position: -28
Score: 5.5
Sequence: CACTGTATAAACAAACAGGC
Locus tag: Patl_2012
Name: Patl_2012
Funciton: hypothetical protein
Patl_2012
hypothetical protein

Position: -45
Score: 5.1
Sequence: ATATGTATATATTTACAGTT
Position: -26
Score: 5.7
Sequence: TACTGTATATTTGAACAGGT
Locus tag: Patl_1714
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -43
Score: 5.4
Sequence: TACTGTCTTTACATACAGTC
Locus tag: Patl_0776
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -64
Score: 5.4
Sequence: AATTGTATAAAAACACAGTA
Locus tag: Patl_4079
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -21
Score: 6.1
Sequence: TACTGTATATAATAACAGTG
Locus tag: Patl_2345
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Patl_2344
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -106
Score: 5.4
Sequence: AACTGTATGGTTGTACAGTA
Locus tag: Patl_3259
Name: recA
Funciton: Recombinase A
recA
Recombinase A
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