Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Pseudoalteromonas atlantica T6c

Properties
Regulator type: Transcription factor
TF locus tag: Patl_2152
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Alteromonadales
Statistics of regulated genes:
- Genes 31
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 142 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -260
Score: 4.6
Sequence: TAATAATAACAATACTCACCT
Locus tag: Patl_0493
Name: yfeK
Funciton: Predicted iron-dependent peroxidase, Dyp-type family
Patl_0493
yfeK
Predicted iron-dependent peroxidase, Dyp-type family
Position: -97
Score: 5.2
Sequence: GAATGCAAATAGTTATCATAT
Locus tag: Patl_0311
Name: fhuE
Funciton: TonB-dependent siderophore receptor
Patl_0311
fhuE
TonB-dependent siderophore receptor
Position: -59
Score: 5.3
Sequence: AAATGATATTAATTACCATTC
Locus tag: Patl_3803
Name: COG4774
Funciton: Outer membrane receptor for monomeric catechols, TonB-dependent
Locus tag: Patl_3802
Name: ATW7_00890
Funciton: iron uptake protein
Locus tag: Patl_3801
Name: pepSY
Funciton: iron-regulated membrane protein
Patl_3803
COG4774
Outer membrane receptor for monomeric catechols, TonB-dependent
Patl_3802
ATW7_00890
iron uptake protein
Patl_3801
pepSY
iron-regulated membrane protein
Position: -27
Score: 6
Sequence: AAATGATAATAATTAGCATTA
Locus tag: Patl_2402
Name: Patl_2402
Funciton: Ferric aerobactin receptor
Locus tag: Patl_2403
Name: pepSY
Funciton: Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB
Patl_2402
Patl_2402
Ferric aerobactin receptor
Patl_2403
pepSY
Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB
Position: -66
Score: 5.6
Sequence: AAATGATAACGATTACTATTT
Locus tag: Patl_1486
Name: COG4771
Funciton: Outer membrane receptor for ferrienterochelin, TonB-dependent
Locus tag: Patl_1487
Name: null
Funciton: hypothetical protein
Locus tag: Patl_1488
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic component
Locus tag: Patl_1489
Name: hmuU
Funciton: Hemin ABC transporter, permease protein
Locus tag: Patl_1490
Name: hmuV
Funciton: Hemin ABC transporter, ATP-binding protein
Locus tag: Patl_1491
Name: COG0748
Funciton: Putative heme iron utilization protein
Patl_1486
COG4771
Outer membrane receptor for ferrienterochelin, TonB-dependent
Patl_1487
hypothetical protein
Patl_1488
hmuT
Hemin ABC transporter, periplasmic component
Patl_1489
hmuU
Hemin ABC transporter, permease protein
Patl_1490
hmuV
Hemin ABC transporter, ATP-binding protein
Patl_1491
COG0748
Putative heme iron utilization protein
Position: -70
Score: 5
Sequence: AAATAAGAATTATTACTATTG
Locus tag: Patl_2287
Name: fpr
Funciton: Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Patl_2287
fpr
Ferredoxin--NADP(+) reductase (EC 1.18.1.2)
Position: -105
Score: 5.4
Sequence: TATTGATAATAGTTTGCATTA
Locus tag: Patl_3109
Name: fecA
Funciton: TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
Patl_3109
fecA
TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins
Position: -72
Score: 6.1
Sequence: AATTGAAAATCATTCTCATTA
Locus tag: Patl_1142
Name: Patl_1142
Funciton: TonB-dependent siderophore receptor
Locus tag: Patl_1143
Name: null
Funciton: putative iron-regulated membrane protein
Patl_1142
Patl_1142
TonB-dependent siderophore receptor
Patl_1143
putative iron-regulated membrane protein
Position: -139
Score: 5.3
Sequence: AAATGAGAATTAATCGTATTA
Locus tag: Patl_0749
Name: COG3205
Funciton: membrane protein
Patl_0749
COG3205
membrane protein
Position: -83
Score: 5.8
Sequence: AAATAGTAATAATTCTCATTT
Locus tag: Patl_2259
Name: Patl_0871
Funciton: Siderophore-interacting protein
Patl_2259
Patl_0871
Siderophore-interacting protein
Position: -241
Score: 5.4
Sequence: AAATGATAATAATTGTTGTTT
Locus tag: Patl_1398
Name: ahpCB
Funciton: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Patl_1398
ahpCB
Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Position: -41
Score: 6.2
Sequence: AAATAATAATTATTCTCATTT
Locus tag: Patl_1058
Name: ftr1
Funciton: High-affinity Fe2+/Pb2+ permease
Patl_1058
ftr1
High-affinity Fe2+/Pb2+ permease
Position: -93
Score: 4.7
Sequence: AAATTCAAATGATATTCATTA
Position: -87
Score: 6
Sequence: AAATGATATTCATTATCATTA
Locus tag: Patl_1443
Name: null
Funciton: Ferrichrome-iron receptor
Locus tag: Patl_1444
Name: null
Funciton: putative iron-regulated membrane protein
Patl_1443
Ferrichrome-iron receptor
Patl_1444
putative iron-regulated membrane protein
Position: -51
Score: 5.6
Sequence: TAATGAGAATGCTTCTTATTT
Locus tag: Patl_3414
Name: piu
Funciton: Putaive Fe-regulated protein B
Locus tag: Patl_3413
Name: piuB
Funciton: Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB
Patl_3414
piu
Putaive Fe-regulated protein B
Patl_3413
piuB
Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB
Position: -147
Score: 4.5
Sequence: AATCATCAATTATTCTCATTT
Locus tag: Patl_2076
Name: bfr2
Funciton: Bacterioferritin, subunit 2
Locus tag: Patl_2075
Name: bfr1
Funciton: Bacterioferritin subunit 1
Patl_2076
bfr2
Bacterioferritin, subunit 2
Patl_2075
bfr1
Bacterioferritin subunit 1
Position: -46
Score: 5.4
Sequence: AAACAACAATTATTATCATTT
Locus tag: Patl_1397
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Patl_1397
bfd
Bacterioferritin-associated ferredoxin
Position: -32
Score: 6.1
Sequence: AATTGATAATTATTCTCAATT
Locus tag: Patl_1596
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: Patl_1597
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: Patl_1598
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
Patl_1596
fbpA
Ferric iron ABC transporter, iron-binding protein
Patl_1597
fbpB
Ferric iron ABC transporter, permease protein
Patl_1598
fbpC
Ferric iron ABC transporter, ATP-binding protein
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