Regulon of VanR in Pseudoalteromonas atlantica T6c

Properties
Regulator type:	Transcription factor
TF locus tag:	Patl_0845
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Vanillate utilization
Effector:	Vanillate
Regulog:	VanR - Alteromonadales
Statistics of regulated genes:
- Genes	8
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - VanR
By TF family - GntR/Others
By effector - Vanillate
By pathway - Vanillate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -200 Score: 5.3 Sequence: TTTGGATCCAAT Position: -164 Score: 3.8 Sequence: TTTGGCTGCAAT Locus tag: Patl_0858 Name: Patl_0858 Funciton: Rieske (2Fe-2S) region, ferredoxin Locus tag: Patl_0859 Name: null Funciton: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
	Patl_0858	Patl_0858	Rieske (2Fe-2S) region, ferredoxin
	Patl_0859		2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Position: -242 Score: 4.7 Sequence: GTTGGATCCATT Position: -189 Score: 5.5 Sequence: ATTGGATCCAAT Position: -72 Score: 5.5 Sequence: ATTGGATCCAAT Locus tag: Patl_0845 Name: vanR Funciton: Transcriptional regulator for ferulate or vanillate catabolism, GntR family
	Patl_0845	vanR	Transcriptional regulator for ferulate or vanillate catabolism, GntR family
Position: -202 Score: 5.5 Sequence: ATTGGATCCAAT Position: -85 Score: 5.5 Sequence: ATTGGATCCAAT Position: -32 Score: 5.1 Sequence: AATGGATCCAAC Locus tag: Patl_0844 Name: vanA Funciton: vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)
	Patl_0844	vanA	vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-)
Position: -260 Score: 3.8 Sequence: CTTCGATCCAAC Position: -63 Score: 3.7 Sequence: TATTCATCCAAT Locus tag: Patl_0852 Name: null Funciton: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
	Patl_0852		Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
Position: -94 Score: 3.6 Sequence: TGTGGATGCAGT Position: -1 Score: 4.3 Sequence: TATGTATCCATT Locus tag: Patl_0867 Name: null Funciton: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) Locus tag: Patl_0868 Name: doxX Funciton: conserved membrane protein Locus tag: Patl_0869 Name: vanB Funciton: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)
	Patl_0867		Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82)
	Patl_0868	doxX	conserved membrane protein
	Patl_0869	vanB	Vanillate O-demethylase oxidoreductase (EC 1.14.13.-)

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD