Regulog VanR - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Vanillate utilization |
| Effector: | Vanillate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - VanR
- By TF family - GntR/Others
- By effector - Vanillate
- By pathway - Vanillate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 8 | 5 |
| Alteromonas macleodii 'Deep ecotype' | ||
| Glaciecola sp. HTCC2999 | ||
| Colwellia psychrerythraea 34H | ||
| Alteromonadales bacterium TW-7 | ||
| Pseudoalteromonas haloplanktis TAC125 | ||
| Pseudoalteromonas tunicata D2 | ||
| Idiomarina baltica OS145 | ||
| Idiomarina loihiensis L2TR |
| Genes | Function | |||||||||
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| CRON 1. | ||||||||||
| Patl_0867 |
*2
Pseudoalteromonas atlantica T6c Site: position = -1 score = 4.3026 sequence = TATGTATCCATT Gene: Patl_0867: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) Site: position = -260 score = 3.81445 sequence = CTTCGATCCAAC Site: position = -63 score = 3.74145 sequence = TATTCATCCAAT Gene: Patl_0852: Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
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Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82) |
| doxX |
Gene: Patl_0868: conserved membrane protein |
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conserved membrane protein |
| vanB |
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Pseudoalteromonas atlantica T6c Site: position = -94 score = 3.62896 sequence = TGTGGATGCAGT Gene: Patl_0869: Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
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Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) |
| CRON 2. | ||||||||||
| Patl_0858 |
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Pseudoalteromonas atlantica T6c Site: position = -200 score = 5.26014 sequence = TTTGGATCCAAT Site: position = -164 score = 3.84753 sequence = TTTGGCTGCAAT Gene: Patl_0858: Rieske (2Fe-2S) region, ferredoxin |
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Rieske (2Fe-2S) region, ferredoxin |
| Patl_0859 |
Gene: Patl_0859: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
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2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
| CRON 3. | ||||||||||
| vanA |
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Pseudoalteromonas atlantica T6c Site: position = -85 score = 5.51815 sequence = ATTGGATCCAAT Site: position = -32 score = 5.06582 sequence = AATGGATCCAAC Site: position = -202 score = 5.51815 sequence = ATTGGATCCAAT Gene: Patl_0844: vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) |
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vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) |
| CRON 4. | ||||||||||
| vanR |
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Pseudoalteromonas atlantica T6c Site: position = -242 score = 4.72185 sequence = GTTGGATCCATT Site: position = -72 score = 5.51815 sequence = ATTGGATCCAAT Site: position = -189 score = 5.51815 sequence = ATTGGATCCAAT Gene: Patl_0845: Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
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Transcriptional regulator for ferulate or vanillate catabolism, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |