Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Paracoccus denitrificans PD1222

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AnsR Asparagine degradation; Aspartate utilization 1 1
TF BioR Biotin biosynthesis 5 6
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 2 2
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 16 11
TF EutR Ectoine utilization 1 2
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF FnrN Oxygen Oxidative stress response; Nitrogen fixation 11 8
TF GlcC Glycolate Glycolate utilization 1 1
TF HrcA Heat shock Heat shock response 2 1
TF HutC cis-Urocanic acid Histidine utilization 2 4
TF HypR 4-hydroxyproline Proline and 4-hydrohyproline utilization 8 5
TF HypR2 4-hydroxyproline Proline and 4-hydrohyproline utilization 7 2
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 14 6
TF Jann_1459 Sugar utilization 2 2
TF KglR Sugar utilization 1 1
TF LexA DNA damage SOS response 9 7
TF LiuR Branched-chain amino acid degradation 2 1
TF LldR L-lactate Lactate utilization 2 2
TF MdcY Malonate metabolism 3 2
TF MetR Homocysteine Methionine biosynthesis 3 2
TF ModE2 Molybdate Molybdenum homeostasis 1 1
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 2 4
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 7 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 7 5
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 5 4
TF Pden_0318 2 2
TF Pden_3389 Glycolate utilization; Lactate utilization 2 5
TF Pden_4836 1 1
TF PdxQ Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PdxR2 Pyridoxine biosynthesis 2 1
TF PhnF Phosphonate utilization 3 4
TF RspR L-gulonate; D-mannonate L-gulonate utilization 1 1
TF RutR Uracil Pyrimidine utilization 7 1
TF SmoR Sorbitol Sorbitol utilization; Mannitol utilization 3 3
TF TauR Taurine Taurine utilization 3 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 16 10
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 2 4
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 3
RNA serC Serine biosynthesis 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
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