Regulon of BioR in Paracoccus denitrificans PD1222
| Regulator type: | Transcription factor |
| TF locus tag: | Pden_2922, Pden_1431 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | |
| Regulog: | BioR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 4 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By pathway - Biotin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -39
Score: 4.3 Sequence: TTATCGACAA
Locus tag: Pden_2922
Name: bioR Funciton: Biotin metabolism regulatory protein BioR, GntR family |
|||
|
bioR
|
Biotin metabolism regulatory protein BioR, GntR family
|
||
|
Position: -13
Score: 4.8 Sequence: TTATCTATAA
Locus tag: Pden_1431
Name: bioR Funciton: Biotin metabolism regulatory protein BioR, GntR family |
|||
|
bioR
|
Biotin metabolism regulatory protein BioR, GntR family
|
||
|
Position: -80
Score: 4.2 Sequence: TAATAGATAA
Position: -37
Score: 4.1 Sequence: TTATAGATAC
Locus tag: Pden_2916
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6)
Locus tag: Pden_2917
Name: bioF Funciton: 8-amino-7-oxononanoate synthase (EC 2.3.1.47)
Locus tag: Pden_2918
Name: bioD Funciton: Dethiobiotin synthetase (EC 6.3.3.3)
Locus tag: Pden_2919
Name: bioA Funciton: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
Locus tag: Pden_2920
Name: bioG Funciton: Biotin synthesis protein bioG
Locus tag: Pden_2921
Name: bioC Funciton: Biotin synthesis protein bioC |
|||
|
bioB
|
Biotin synthase (EC 2.8.1.6)
|
||
|
bioF
|
8-amino-7-oxononanoate synthase (EC 2.3.1.47)
|
||
|
bioD
|
Dethiobiotin synthetase (EC 6.3.3.3)
|
||
|
bioA
|
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62)
|
||
|
bioG
|
Biotin synthesis protein bioG
|
||
|
bioC
|
Biotin synthesis protein bioC
|
||
|
Position: -84
Score: 4.8 Sequence: TTATCTATAA
Position: -40
Score: 4.4 Sequence: TTATAGATAG
Locus tag: Pden_1432
Name: bioY Funciton: Core component BioY of biotin ECF transporter
Locus tag: Pden_1433
Name: bioB Funciton: Biotin synthase (EC 2.8.1.6) |
|||
|
bioY
|
Core component BioY of biotin ECF transporter
|
||
|
bioB
|
Biotin synthase (EC 2.8.1.6)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |