Regulog BioR - Rhodobacterales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | |
| Phylum: | Alphaproteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By TF family - GntR/Others
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hyphomonas neptunium ATCC 15444 | ||
| Jannaschia sp. CCS1 | ||
| Loktanella vestfoldensis SKA53 | ||
| Oceanicaulis alexandrii HTCC2633 | ||
| Oceanicola batsensis HTCC2597 | ||
| Oceanicola granulosus HTCC2516 | ||
| Paracoccus denitrificans PD1222 | 10 | 4 |
| Rhodobacter sphaeroides 2.4.1 | 3 | 2 |
| Rhodobacterales bacterium HTCC2654 | ||
| Roseobacter sp. MED193 | 4 | 1 |
| Roseovarius nubinhibens ISM | ||
| Roseovarius sp. 217 | ||
| Silicibacter TM1040 | 3 | 1 |
| Silicibacter pomeroyi DSS-3 | 3 | 2 |
| Sulfitobacter sp. EE-36 | 3 | 2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| bioM |
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Gene: Pden_5031: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: RSP_2175: ATPase component BioM of energizing module of biotin ECF transporter |
Gene: RB2654_23308: ATPase component BioM of energizing module of biotin ECF transporter |
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Silicibacter TM1040 Site: position = -94 score = 4.82597 sequence = TTATAGATAA Gene: TM1040_3661: ATPase component BioM of energizing module of biotin ECF transporter |
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Gene: EE36_08678: ATPase component BioM of energizing module of biotin ECF transporter |
ATPase component BioM of energizing module of biotin ECF transporter |
| bioN |
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Gene: Pden_5032: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: RSP_2174: Transmembrane component BioN of energizing module of biotin ECF transporter |
Gene: RB2654_23303: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Gene: TM1040_3660: Transmembrane component BioN of energizing module of biotin ECF transporter |
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Gene: EE36_08683: Transmembrane component BioN of energizing module of biotin ECF transporter |
Transmembrane component BioN of energizing module of biotin ECF transporter |
| bioY |
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Gene: Pden_5033: Substrate-specific component BioY of biotin ECF transporter |
Gene: RSP_2173: Substrate-specific component BioY of biotin ECF transporter |
Gene: RB2654_23298: Substrate-specific component BioY of biotin ECF transporter |
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Gene: TM1040_3659: Substrate-specific component BioY of biotin ECF transporter |
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Gene: EE36_05348: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| CRON 2. | ||||||||||||||||
| bioB |
Gene: HNE_0048: Biotin synthase (EC 2.8.1.6) |
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Gene: OA2633_11183: Biotin synthase (EC 2.8.1.6) |
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*2
Paracoccus denitrificans PD1222 Gene: Pden_1433: Biotin synthase (EC 2.8.1.6) Site: position = -80 score = 4.22582 sequence = TAATAGATAA Site: position = -37 score = 4.07533 sequence = TTATAGATAC Gene: Pden_2916: Biotin synthase (EC 2.8.1.6) |
Gene: RSP_1923: Biotin synthase (EC 2.8.1.6) |
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Roseobacter sp. MED193 Site: position = -164 score = 4.82597 sequence = TTATAGATAA Site: position = -132 score = 3.62979 sequence = TTATAGATGG Site: position = -67 score = 4.07533 sequence = ATATCTATAA Gene: MED193_07723: Biotin synthase (EC 2.8.1.6) |
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Gene: SPO3338: Biotin synthase (EC 2.8.1.6) |
Gene: EE36_13893: Biotin synthase (EC 2.8.1.6) |
Biotin synthase (EC 2.8.1.6) |
| bioF |
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Gene: Pden_2917: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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Gene: MED193_07718: 8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
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8-amino-7-oxononanoate synthase (EC 2.3.1.47) |
| bioD |
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Gene: Pden_2918: Dethiobiotin synthetase (EC 6.3.3.3) |
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Gene: MED193_07713: Dethiobiotin synthetase (EC 6.3.3.3) |
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Dethiobiotin synthetase (EC 6.3.3.3) |
| bioA |
Gene: HNE_1247: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: Pden_2919: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Gene: MED193_07708: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
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Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) |
| bioG |
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Gene: Pden_2920: Biotin synthesis protein bioG |
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Biotin synthesis protein bioG |
| bioC |
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Gene: Pden_2921: Biotin synthesis protein bioC |
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Biotin synthesis protein bioC |
| bioY |
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Paracoccus denitrificans PD1222 Site: position = -84 score = 4.82597 sequence = TTATCTATAA Site: position = -40 score = 4.39409 sequence = TTATAGATAG Gene: Pden_1432: Core component BioY of biotin ECF transporter |
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Rhodobacter sphaeroides 2.4.1 Site: position = -203 score = 4.82597 sequence = TTATCTATAA Site: position = -159 score = 4.39409 sequence = TTATAGATAG Gene: RSP_1924: Core component BioY of biotin ECF transporter |
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Silicibacter pomeroyi DSS-3 Site: position = -64 score = 4.39409 sequence = TTATAGATAG Site: position = -23 score = 4.82597 sequence = TTATCTATAA Gene: SPO3339: Core component BioY of biotin ECF transporter |
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Sulfitobacter sp. EE-36 Site: position = -83 score = 4.82597 sequence = TTATCTATAA Gene: EE36_13898: Core component BioY of biotin ECF transporter |
Core component BioY of biotin ECF transporter |
| CRON 3. | ||||||||||||||||
| bioR |
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*2
Paracoccus denitrificans PD1222 Site: position = -39 score = 4.32371 sequence = TTATCGACAA Gene: Pden_2922: Biotin metabolism regulatory protein BioR, GntR family Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: Pden_1431: Biotin metabolism regulatory protein BioR, GntR family |
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Rhodobacter sphaeroides 2.4.1 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: RSP_1925: Biotin metabolism regulatory protein BioR, GntR family |
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Gene: MED193_13378: Biotin metabolism regulatory protein BioR, GntR family |
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Gene: TM1040_3010: Biotin metabolism regulatory protein BioR, GntR family |
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Silicibacter pomeroyi DSS-3 Site: position = -13 score = 4.82597 sequence = TTATCTATAA Gene: SPO3340: Biotin metabolism regulatory protein BioR, GntR family |
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Sulfitobacter sp. EE-36 Site: position = -61 score = 4.39409 sequence = CTATCTATAA Gene: EE36_13903: Biotin metabolism regulatory protein BioR, GntR family |
Biotin metabolism regulatory protein BioR, GntR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |