Regulon of Cobalamin in Paracoccus denitrificans PD1222
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Rhodobacterales |
| Under regulation: | |
| - Genes | 39 |
| - Operons | 10 |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -241
Score: 133.6 Sequence: TAACATATGCGTGTA...
Locus tag: Pden_2524
Name: cbtB Funciton: Putative cobalt transporter, subunit CbtB
Locus tag: Pden_2525
Name: cbtA Funciton: Predicted cobalt transporter CbtA
Locus tag: Pden_2526
Name: Pden_2526 Funciton: hypothetical protein
Locus tag: Pden_2527
Name: bluB Funciton: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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cbtB
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Putative cobalt transporter, subunit CbtB
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cbtA
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Predicted cobalt transporter CbtA
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Pden_2526
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hypothetical protein
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bluB
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Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
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Position: -414
Score: 119 Sequence: CCCTATATGTAGGCA...
Locus tag: Pden_2989
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: Pden_2988
Name: Pden_2988 Funciton: hypothetical protein
Locus tag: Pden_2987
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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Pden_2988
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hypothetical protein
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -408
Score: 127.9 Sequence: CTACACGGTCGGGTG...
Locus tag: Pden_4827
Name: btuB Funciton: Outer membrane (iron.B12.siderophore.hemin) receptor
Locus tag: Pden_4828
Name: btuD Funciton: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
Locus tag: Pden_4829
Name: btuF Funciton: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
Locus tag: Pden_4830
Name: btuC Funciton: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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btuB
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Outer membrane (iron.B12.siderophore.hemin) receptor
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btuD
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
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btuF
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
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btuC
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ABC transporter (iron.B12.siderophore.hemin) , permease component
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Position: -326
Score: 132.3 Sequence: TTTTACCGTCAGATC...
Locus tag: Pden_1354
Name: Cseg_1811 Funciton: hypothetical protein
Locus tag: Pden_1355
Name: metE Funciton: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Cseg_1811
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hypothetical protein
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metE
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
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Position: -284
Score: 121.4 Sequence: CTAACTGCAACGGTC...
Locus tag: Pden_4375
Name: nrdH Funciton: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Locus tag: Pden_4376
Name: nrdI Funciton: Ribonucleotide reduction protein NrdI
Locus tag: Pden_4377
Name: nrdA Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: Pden_4378
Name: nrdB Funciton: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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nrdH
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
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nrdI
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Ribonucleotide reduction protein NrdI
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nrdA
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
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nrdB
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
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Position: -322
Score: 101.5 Sequence: TACCAAGTCGCTGCA...
Locus tag: Pden_2980
Name: btuF Funciton: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
Locus tag: Pden_2981
Name: btuC Funciton: ABC transporter (iron.B12.siderophore.hemin) , permease component
Locus tag: Pden_2982
Name: btuD Funciton: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
Locus tag: Pden_2983
Name: petE Funciton: Pseudoazurin precursor |
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btuF
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
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btuC
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ABC transporter (iron.B12.siderophore.hemin) , permease component
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btuD
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
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petE
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Pseudoazurin precursor
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Position: -293
Score: 104.1 Sequence: GCGCTATGGCGGAGT...
Locus tag: Pden_1362
Name: btuF Funciton: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
Locus tag: Pden_1361
Name: btuC Funciton: ABC transporter (iron.B12.siderophore.hemin) , permease component
Locus tag: Pden_1360
Name: btuD Funciton: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
Locus tag: Pden_1359
Name: petE Funciton: Pseudoazurin precursor |
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btuF
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
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btuC
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ABC transporter (iron.B12.siderophore.hemin) , permease component
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btuD
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
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petE
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Pseudoazurin precursor
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Position: -349
Score: 101.9 Sequence: CAATGCGGGGCCGCT...
Locus tag: Pden_4382
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Pden_4383
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Pden_4384
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Pden_4385
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Position: -347
Score: 131.2 Sequence: GCCATGAGGGCCGAG...
Locus tag: Pden_1368
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB
Locus tag: Pden_1367
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Pden_1366
Name: COG3313 Funciton: COG3313: Predicted Fe-S protein |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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COG3313
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COG3313: Predicted Fe-S protein
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Position: -277
Score: 85.2 Sequence: CACAGACATGGGGCG...
Locus tag: Pden_2530
Name: cfrX Funciton: Predicted metal-binding protein
Locus tag: Pden_2531
Name: cobW Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis
Locus tag: Pden_2532
Name: cobN Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis
Locus tag: Pden_2533
Name: cobG Funciton: Cobalamin biosynthesis protein CobG
Locus tag: Pden_2534
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Pden_2535
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: Pden_2536
Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase |
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cfrX
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Predicted metal-binding protein
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cobW
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CobW GTPase involved in cobalt insertion for B12 biosynthesis
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cobN
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CobN component of cobalt chelatase involved in B12 biosynthesis
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cobG
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Cobalamin biosynthesis protein CobG
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cbiC
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Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiH
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Cobalt-precorrin-3b C17-methyltransferase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |