Regulog Cobalamin - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 20 | 6 |
| Paracoccus denitrificans PD1222 | 39 | 10 |
| Jannaschia sp. CCS1 | 12 | 2 |
| Rhodobacterales bacterium HTCC2654 | 2 | 1 |
| Oceanicola granulosus HTCC2516 | 2 | 1 |
| Loktanella vestfoldensis SKA53 | 2 | 1 |
| Oceanicola batsensis HTCC2597 | 4 | 1 |
| Roseovarius nubinhibens ISM | 14 | 4 |
| Roseovarius sp. 217 | 4 | 2 |
| Sulfitobacter sp. EE-36 | 13 | 4 |
| Silicibacter TM1040 | 19 | 6 |
| Silicibacter pomeroyi DSS-3 | 11 | 3 |
| Roseobacter sp. MED193 | 14 | 4 |
| Hyphomonas neptunium ATCC 15444 | 10 | 2 |
| Oceanicaulis alexandrii HTCC2633 | 4 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| btuB |
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Rhodobacter sphaeroides 2.4.1 Site: position = -326 score = 129.12 sequence = TATTGAGGAACGGCT... Gene: RSP_2402: Outer membrane vitamin B12 receptor BtuB |
*2
Paracoccus denitrificans PD1222 Site: position = -347 score = 131.2 sequence = GCCATGAGGGCCGAG... Gene: Pden_1368: Outer membrane vitamin B12 receptor BtuB Site: position = -349 score = 101.88 sequence = CAATGCGGGGCCGCT... Gene: Pden_4382: Outer membrane vitamin B12 receptor BtuB |
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*2
Hyphomonas neptunium ATCC 15444 Site: position = -355 score = 140.25 sequence = CATCAACCCCATCAG... Gene: HNE_1514: Outer membrane vitamin B12 receptor BtuB Site: position = -248 score = 112.13 sequence = CGCCGCCTCACGCAA... Gene: HNE_1142: Outer membrane vitamin B12 receptor BtuB |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -352 score = 110.46 sequence = ACACCGACATACGCG... Gene: OA2633_11725: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| btuF |
Gene: RSP_2403: Vitamin B12 ABC transporter, B12-binding component BtuF |
2
Paracoccus denitrificans PD1222 Gene: Pden_1367: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: Pden_4383: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: EE36_11354: Vitamin B12 ABC transporter, B12-binding component BtuF |
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2
Hyphomonas neptunium ATCC 15444 Gene: HNE_1515: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: HNE_1143: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: OA2633_11730: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
Gene: RSP_2404: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Pden_4384: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: EE36_17252: Vitamin B12 ABC transporter, permease component BtuC |
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2
Hyphomonas neptunium ATCC 15444 Gene: HNE_1516: Vitamin B12 ABC transporter, permease component BtuC Gene: HNE_1144: Vitamin B12 ABC transporter, permease component BtuC |
Gene: OA2633_11735: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
Gene: RSP_2405: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Pden_4385: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: EE36_17247: Vitamin B12 ABC transporter, ATPase component BtuD |
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2
Hyphomonas neptunium ATCC 15444 Gene: HNE_1517: Vitamin B12 ABC transporter, ATPase component BtuD Gene: HNE_1145: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: OA2633_11740: Vitamin B12 ABC transporter, ATPase component BtuD |
Vitamin B12 ABC transporter, ATPase component BtuD |
| cbiB |
Gene: RSP_0430: Adenosylcobinamide-phosphate synthase |
Gene: Pden_3631: Adenosylcobinamide-phosphate synthase |
Gene: Jann_0370: Adenosylcobinamide-phosphate synthase |
Gene: RB2654_11358: Adenosylcobinamide-phosphate synthase |
Gene: OG2516_10811: Adenosylcobinamide-phosphate synthase |
Gene: SKA53_10054: Adenosylcobinamide-phosphate synthase |
Gene: OB2597_10279: Adenosylcobinamide-phosphate synthase |
Gene: ISM_13690: Adenosylcobinamide-phosphate synthase |
Gene: ROS217_22072: Adenosylcobinamide-phosphate synthase |
Gene: EE36_11344: Adenosylcobinamide-phosphate synthase |
Gene: TM1040_2585: Adenosylcobinamide-phosphate synthase |
Gene: SPO3225: Adenosylcobinamide-phosphate synthase |
Gene: MED193_16272: Adenosylcobinamide-phosphate synthase |
Gene: HNE_1519: Adenosylcobinamide-phosphate synthase |
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Adenosylcobinamide-phosphate synthase |
| cobD |
Gene: RSP_0789: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Pden_2200: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Jann_0369: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: RB2654_11353: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: OG2516_10806: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: SKA53_10049: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: OB2597_10274: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: ISM_13695: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: ROS217_22067: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: EE36_11349: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: TM1040_2584: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: SPO3224: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: MED193_16277: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: HNE_1520: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
| cbiZ |
Gene: RSP_2406: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
Gene: Pden_4761: Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
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Adenosylcobinamide amidohydrolase (EC 3.5.1.90) |
| COG3313 |
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Gene: Pden_1366: COG3313: Predicted Fe-S protein |
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COG3313: Predicted Fe-S protein |
| RSP_0787 |
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Rhodobacter sphaeroides 2.4.1 Site: position = -293 score = 107.7 sequence = CGGAAGGTGCGGGCG... Gene: RSP_0787: hypothetical protein |
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Silicibacter TM1040 Site: position = -308 score = 125.5 sequence = GCGTAGCATCCAGAC... Gene: TM1040_0168: hypothetical protein |
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Silicibacter pomeroyi DSS-3 Site: position = -251 score = 120.63 sequence = GCTACCGCTGGGTCG... Gene: SPO3547: hypothetical protein |
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Roseobacter sp. MED193 Site: position = -441 score = 123.16 sequence = ATAGCCGTGTAACGG... Gene: MED193_11852: hypothetical protein |
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hypothetical protein |
| pduX |
Gene: RSP_0788: hypothetical protein |
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Gene: EE36_11339: hypothetical protein |
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hypothetical protein |
| CRON 2. | ||||||||||||||||
| cfrX |
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Rhodobacter sphaeroides 2.4.1 Site: position = -292 score = 75.63 sequence = ACCACTTCCGGCGCG... Gene: RSP_2829: Predicted metal-binding protein |
*2
Paracoccus denitrificans PD1222 Site: position = -277 score = 85.19 sequence = CACAGACATGGGGCG... Gene: Pden_2530: Predicted metal-binding protein Gene: Pden_2543: Predicted metal-binding protein |
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Jannaschia sp. CCS1 Site: position = -221 score = 141.54 sequence = TGAACAGGGTCACGG... Gene: Jann_2934: Predicted metal-binding protein |
Gene: RB2654_11348: Predicted metal-binding protein |
Gene: OG2516_10801: Predicted metal-binding protein |
Gene: SKA53_10044: Predicted metal-binding protein |
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Roseovarius nubinhibens ISM Site: position = -321 score = 127.99 sequence = GCATTGTCGCCCCTG... Gene: ISM_12600: Predicted metal-binding protein |
Gene: ROS217_22062: Predicted metal-binding protein |
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Sulfitobacter sp. EE-36 Site: position = -311 score = 88.94 sequence = AATGCAGGGCGTATG... Gene: EE36_05358: Predicted metal-binding protein |
*2
Silicibacter TM1040 Site: position = -336 score = 77.76 sequence = CGCAAGGAAATTTCG... Gene: TM1040_2208: Predicted metal-binding protein Gene: TM1040_2221: Predicted metal-binding protein |
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Silicibacter pomeroyi DSS-3 Site: position = -292 score = 81.78 sequence = CGCATGTCCGCCCTG... Gene: SPO2861: Predicted metal-binding protein |
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Roseobacter sp. MED193 Site: position = -216 score = 93.53 sequence = GCGCAAGGGGGTTTT... Gene: MED193_19614: Predicted metal-binding protein |
Gene: HNE_2170: Predicted metal-binding protein |
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Predicted metal-binding protein |
| cobW |
Gene: RSP_2828: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: Pden_2531: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: Jann_2933: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: RB2654_11398: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: OG2516_10831: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: SKA53_10074: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: OB2597_10309: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: ISM_12605: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: ROS217_08014: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: EE36_05363: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: TM1040_2209: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: SPO2862: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
Gene: MED193_19609: CobW GTPase involved in cobalt insertion for B12 biosynthesis |
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CobW GTPase involved in cobalt insertion for B12 biosynthesis |
| engA |
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Gene: Jann_2932: hypothetical protein |
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GTP-binding protein EngA |
| cobN |
Gene: RSP_2827: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: Pden_2532: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: Jann_2931: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: RB2654_11408: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: OG2516_10846: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: SKA53_10089: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: OB2597_10319: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: ISM_12610: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: ROS217_08029: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: EE36_05368: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: TM1040_2210: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: SPO2863: CobN component of cobalt chelatase involved in B12 biosynthesis |
Gene: MED193_19604: CobN component of cobalt chelatase involved in B12 biosynthesis |
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CobN component of cobalt chelatase involved in B12 biosynthesis |
| cobG |
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Gene: Pden_2533: Cobalamin biosynthesis protein CobG |
Gene: Jann_2930: Cobalamin biosynthesis protein CobG |
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Gene: ISM_12615: Cobalamin biosynthesis protein CobG |
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Gene: EE36_05373: Cobalamin biosynthesis protein CobG |
Gene: TM1040_2211: Cobalamin biosynthesis protein CobG |
Gene: SPO2864: Cobalamin biosynthesis protein CobG |
Gene: MED193_19599: Cobalamin biosynthesis protein CobG |
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Cobalamin biosynthesis protein CobG |
| cbiC |
Gene: RSP_6217: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Pden_2534: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Jann_2929: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: RB2654_16306: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: OG2516_09118: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: SKA53_10019: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: OB2597_10249: Cobalamin biosynthesis protein CobG / Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: ISM_12620: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: ROS217_13496: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: EE36_05378: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: TM1040_2212: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: SPO2865: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: MED193_19594: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
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Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| cbiL |
Gene: RSP_2826: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Pden_2535: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Jann_2928: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: RB2654_16316: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: OG2516_09108: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: SKA53_10009: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: OB2597_10239: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: ISM_12625: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: ROS217_13506: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: EE36_05383: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: TM1040_2213: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: SPO2866: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: MED193_19589: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiH |
Gene: RSP_2824: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Pden_2536: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Jann_2927: Cobalt-precorrin-3b C17-methyltransferase |
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Gene: ISM_12630: Cobalt-precorrin-3b C17-methyltransferase |
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Gene: EE36_05388: Cobalt-precorrin-3b C17-methyltransferase |
Gene: TM1040_2214: Cobalt-precorrin-3b C17-methyltransferase |
Gene: SPO2867: Cobalt-precorrin-3b C17-methyltransferase |
Gene: MED193_19584: Cobalt-precorrin-3b C17-methyltransferase |
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Cobalt-precorrin-3b C17-methyltransferase |
| cbtC |
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Rhodobacter sphaeroides 2.4.1 Site: position = -275 score = 109.1 sequence = TGTCACGCCGGGCTA... Gene: RSP_3186: Predicted cobalt transporter CbtC |
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Oceanicola batsensis HTCC2597 Site: position = -244 score = 106.7 sequence = GCACAACCGAAAGGC... Gene: OB2597_10304: Predicted cobalt transporter CbtC |
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Roseovarius nubinhibens ISM Site: position = -235 score = 117.47 sequence = ATCTCCTTCCATTCG... Gene: ISM_12665: Predicted cobalt transporter CbtC |
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Sulfitobacter sp. EE-36 Site: position = -288 score = 110.69 sequence = GACCACCTATTCCGG... Gene: EE36_05423: Predicted cobalt transporter CbtC |
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Roseobacter sp. MED193 Site: position = -280 score = 126.33 sequence = AGAGCAGTGACCTAT... Gene: MED193_19549: Predicted cobalt transporter CbtC |
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Predicted cobalt transporter CbtC |
| RSP_2081 |
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Gene: RB2654_11403: Histone acetyltransferase HPA2 and related acetyltransferases |
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Gene: OB2597_10314: Histone acetyltransferase HPA2 and related acetyltransferases |
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Histone acetyltransferase HPA2 and related acetyltransferases |
| cobF |
Gene: RSP_2819: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: Pden_2542: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: Jann_2920: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: RB2654_13940: Precorrin-6A synthase (EC 2.1.1.152) |
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Gene: ISM_12670: Precorrin-6A synthase (EC 2.1.1.152) |
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Gene: EE36_05428: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: TM1040_2224: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: SPO2874: Precorrin-6A synthase (EC 2.1.1.152) |
Gene: MED193_19544: Precorrin-6A synthase (EC 2.1.1.152) |
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Precorrin-6A synthase (EC 2.1.1.152) |
| hupE |
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Oceanicola granulosus HTCC2516 Site: position = -305 score = 108.97 sequence = CACAAAGATCCCCGC... Gene: OG2516_10826: HupE-UreJ family cobalt transporter |
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Loktanella vestfoldensis SKA53 Site: position = -323 score = 105.97 sequence = GCACAACATGACGGC... Gene: SKA53_10069: HupE-UreJ family cobalt transporter |
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HupE-UreJ family cobalt transporter |
| cbiA |
Gene: RSP_3185: Cobyrinic acid A,C-diamide synthase |
Gene: Pden_2541: Cobyrinic acid A,C-diamide synthase |
Gene: Jann_2922: Cobyrinic acid A,C-diamide synthase |
Gene: RB2654_01775: Cobyrinic acid A,C-diamide synthase |
Gene: OG2516_03595: Cobyrinic acid A,C-diamide synthase |
Gene: SKA53_03151: Cobyrinic acid A,C-diamide synthase |
Gene: OB2597_04415: Cobyrinic acid A,C-diamide synthase |
Gene: ISM_12655: Cobyrinic acid A,C-diamide synthase |
Gene: ROS217_17927: Cobyrinic acid A,C-diamide synthase |
Gene: EE36_05413: Cobyrinic acid A,C-diamide synthase |
Gene: TM1040_2219: Cobyrinic acid A,C-diamide synthase |
Gene: SPO2872: Cobyrinic acid A,C-diamide synthase |
Gene: MED193_19559: Cobyrinic acid A,C-diamide synthase |
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Cobyrinic acid A,C-diamide synthase |
| CRON 3. | ||||||||||||||||
| btuF |
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Rhodobacter sphaeroides 2.4.1 Site: position = -373 score = 100.61 sequence = CGGCTACTCAATCCT... Gene: RSP_3392: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
*2
Paracoccus denitrificans PD1222 Site: position = -322 score = 101.5 sequence = TACCAAGTCGCTGCA... Gene: Pden_2980: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component Site: position = -293 score = 104.14 sequence = GCGCTATGGCGGAGT... Gene: Pden_1362: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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Roseovarius nubinhibens ISM Site: position = -322 score = 109.36 sequence = CGGGTGTCACTGCGG... Gene: ISM_07745: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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Sulfitobacter sp. EE-36 Site: position = -344 score = 118.92 sequence = CTGTCATCGAAACCG... Gene: EE36_12323: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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Roseobacter sp. MED193 Site: position = -303 score = 111.96 sequence = TCTAAACGGCAAGAG... Gene: MED193_18509: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
| btuC |
Gene: RSP_3391: ABC transporter (iron.B12.siderophore.hemin) , permease component |
2
Paracoccus denitrificans PD1222 Gene: Pden_2981: ABC transporter (iron.B12.siderophore.hemin) , permease component Gene: Pden_1361: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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Gene: ISM_07740: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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Gene: EE36_12318: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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Gene: MED193_18514: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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ABC transporter (iron.B12.siderophore.hemin) , permease component |
| btuD |
Gene: RSP_3390: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
2
Paracoccus denitrificans PD1222 Gene: Pden_2982: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component Gene: Pden_1360: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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Gene: ISM_07735: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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Gene: EE36_12313: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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Gene: MED193_18519: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
| petE |
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2
Paracoccus denitrificans PD1222 Gene: Pden_2983: Pseudoazurin precursor Gene: Pden_1359: Pseudoazurin precursor |
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Gene: ISM_07730: Pseudoazurin precursor |
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Gene: MED193_18524: Pseudoazurin precursor |
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Pseudoazurin precursor |
| CRON 4. | ||||||||||||||||
| cbtB |
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Paracoccus denitrificans PD1222 Site: position = -241 score = 133.56 sequence = TAACATATGCGTGTA... Gene: Pden_2524: Putative cobalt transporter, subunit CbtB |
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Rhodobacterales bacterium HTCC2654 Site: position = -238 score = 92.63 sequence = CCACAAGGATAAGGC... Gene: RB2654_11383: Putative cobalt transporter, subunit CbtB |
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Roseovarius sp. 217 Site: position = -256 score = 111.32 sequence = GCATACGAGAGTGGC... Gene: ROS217_07994: Putative cobalt transporter, subunit CbtB |
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Silicibacter pomeroyi DSS-3 Site: position = -222 score = 119.05 sequence = GCTAAATGAAGGGGT... Gene: SPO2875: Putative cobalt transporter, subunit CbtB |
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Putative cobalt transporter, subunit CbtB |
| cbtA |
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Gene: Pden_2525: Predicted cobalt transporter CbtA |
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Gene: RB2654_11388: Predicted cobalt transporter CbtA |
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Gene: ROS217_07999: Predicted cobalt transporter CbtA |
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Silicibacter TM1040 Site: position = -352 score = 112.77 sequence = CATTGTCGACGGCAT... Gene: TM1040_2222: Predicted cobalt transporter CbtA |
Gene: SPO2876: Predicted cobalt transporter CbtA |
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Predicted cobalt transporter CbtA |
| Pden_2526 |
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Gene: Pden_2526: hypothetical protein |
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Gene: ROS217_08004: hypothetical protein |
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Gene: TM1040_2223: hypothetical protein |
Gene: SPO2877: hypothetical protein |
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hypothetical protein |
| bluB |
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Rhodobacter sphaeroides 2.4.1 Site: position = -223 score = 92.21 sequence = CTTTGTGGCAGGGGT... Gene: RSP_3218: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: Pden_2527: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Gene: ISM_08825: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: ROS217_08499: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Sulfitobacter sp. EE-36 Site: position = -227 score = 104.56 sequence = GCCCAATGGCCGGGT... Gene: EE36_10479: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: TM1040_2608: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: SPO3254: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
Gene: MED193_16122: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
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Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family |
| CRON 5. | ||||||||||||||||
| cbiW |
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Jannaschia sp. CCS1 Site: position = -273 score = 140.25 sequence = CTGAAATCAAACTGG... Gene: Jann_2250: hypothetical protein |
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Silicibacter TM1040 Site: position = -302 score = 134.44 sequence = CGCATGAGAGGGGCG... Gene: TM1040_2933: hypothetical protein |
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hypothetical protein |
| btuF |
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Gene: Jann_2249: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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Gene: TM1040_2934: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
| btuC |
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Gene: Jann_2248: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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Gene: TM1040_2935: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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ABC transporter (iron.B12.siderophore.hemin) , permease component |
| btuD |
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Gene: Jann_2247: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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Gene: TM1040_2936: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
| CRON 6. | ||||||||||||||||
| nrdH |
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Paracoccus denitrificans PD1222 Site: position = -284 score = 121.41 sequence = CTAACTGCAACGGTC... Gene: Pden_4375: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Silicibacter TM1040 Site: position = -295 score = 121.71 sequence = ATCAATATCGTGTTG... Gene: TM1040_0521: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
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Gene: Pden_4376: Ribonucleotide reduction protein NrdI |
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Gene: TM1040_0520: Ribonucleotide reduction protein NrdI |
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Ribonucleotide reduction protein NrdI |
| nrdA |
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Gene: Pden_4377: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Gene: TM1040_0519: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
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Gene: Pden_4378: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Gene: TM1040_0518: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 7. | ||||||||||||||||
| ISM_13370 |
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Roseovarius nubinhibens ISM Site: position = -341 score = 104.74 sequence = TAGGCTAAAGCTCTC... Gene: ISM_13370: hypothetical protein |
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Roseovarius sp. 217 Site: position = -306 score = 107.21 sequence = TAGGCTGATCCTGTC... Gene: ROS217_16870: hypothetical protein |
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hypothetical protein |
| CRON 8. | ||||||||||||||||
| Cseg_1811 |
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Paracoccus denitrificans PD1222 Site: position = -326 score = 132.3 sequence = TTTTACCGTCAGATC... Gene: Pden_1354: hypothetical protein |
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hypothetical protein |
| metE |
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Gene: Pden_1355: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 9. | ||||||||||||||||
| btuB |
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Paracoccus denitrificans PD1222 Site: position = -408 score = 127.92 sequence = CTACACGGTCGGGTG... Gene: Pden_4827: Outer membrane (iron.B12.siderophore.hemin) receptor |
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Outer membrane (iron.B12.siderophore.hemin) receptor |
| btuD |
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Gene: Pden_4828: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component |
| btuF |
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Gene: Pden_4829: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
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ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component |
| btuC |
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Gene: Pden_4830: ABC transporter (iron.B12.siderophore.hemin) , permease component |
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ABC transporter (iron.B12.siderophore.hemin) , permease component |
| CRON 10. | ||||||||||||||||
| nrdD |
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Paracoccus denitrificans PD1222 Site: position = -414 score = 119.0 sequence = CCCTATATGTAGGCA... Gene: Pden_2989: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| Pden_2988 |
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Gene: Pden_2988: hypothetical protein |
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hypothetical protein |
| nrdG |
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Gene: Pden_2987: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
| CRON 11. | ||||||||||||||||
| ardX |
Gene: RSP_3978: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
2
Paracoccus denitrificans PD1222 Gene: Pden_1189: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Gene: Pden_2832: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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Gene: RB2654_10803: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: OG2516_15469: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
Gene: SKA53_15411: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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Silicibacter TM1040 Site: position = -338 score = 106.59 sequence = ATACAACTCTGCCCT... Gene: TM1040_3219: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
| frdX |
Gene: RSP_3979: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
2
Paracoccus denitrificans PD1222 Gene: Pden_1188: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 Gene: Pden_2831: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Gene: RB2654_10798: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: OG2516_15464: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Gene: SKA53_15406: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Gene: TM1040_3218: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |