Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PaaR in Paracoccus denitrificans PD1222

Properties
Regulator type: Transcription factor
TF locus tag:
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Rhodobacterales
Statistics of regulated genes:
- Genes 21
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -74
Score: 6.6
Sequence: ATTGACCGGCCGGTCGGTTTAT
Locus tag: Pden_4799
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Pden_4800
Name: paaY
Funciton: thioesterase superfamily protein
Locus tag: Pden_4801
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Pden_4802
Name: paaR
Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
paaY
thioesterase superfamily protein
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaR
Transcriptional regulator of phenylacetic acid degradation, TetR family

Position: -61
Score: 6
Sequence: ATTGACCAATCGGTCGGTGAAT
Locus tag: Pden_4811
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: Pden_4810
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Pden_4809
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Pden_4808
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Pden_4807
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Pden_4806
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Pden_4805
Name: Pden_4805
Funciton: Phenylacetic acid catabolic protein
Locus tag: Pden_4804
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaJ
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Pden_4805
Phenylacetic acid catabolic protein
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ

Position: -74
Score: 5.9
Sequence: ATTGACCGACCGAACGGTTAAC
Locus tag: Pden_4813
Name: null
Funciton: Penicillin G acylase
Locus tag: Pden_4812
Name: paaX
Funciton: Phenylacetic acid degradation operon negative regulatory protein paaX
Penicillin G acylase
paaX
Phenylacetic acid degradation operon negative regulatory protein paaX

Position: -20
Score: 6.6
Sequence: ATAAACCGACCGGCCGGTCAAT
Locus tag: paaZ2
Name: paaZ2
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: Pden_4797
Name: livK
Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: Pden_4796
Name: livH
Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: Pden_4795
Name: livF
Funciton: Putative branched-chain amino acid ABC transporter, permease component 2
Locus tag: Pden_4794
Name: livM1
Funciton: utative branched-chain amino acid ABC transporter, ATPase component 1
Locus tag: Pden_4793
Name: livM2
Funciton: utative branched-chain amino acid ABC transporter, ATPase component 2
Locus tag: Pden_4792
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaZ2
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
livK
Putative branched-chain amino acid ABC transporter, substrate-binding component
livH
Putative branched-chain amino acid ABC transporter, permease component
livF
Putative branched-chain amino acid ABC transporter, permease component 2
livM1
utative branched-chain amino acid ABC transporter, ATPase component 1
livM2
utative branched-chain amino acid ABC transporter, ATPase component 2
fadB
Enoyl-CoA hydratase (EC 4.2.1.17)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD