Regulon of PaaR in Paracoccus denitrificans PD1222
| Regulator type: | Transcription factor |
| TF locus tag: | |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Phenylacetic acid degradation |
| Effector: | Phenylacetyl-CoA |
| Regulog: | PaaR - Rhodobacterales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PaaR
- By taxonomy - Rhodobacterales
- By TF family - TetR
- By effector - Phenylacetyl-CoA
- By pathway - Phenylacetic acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -74
Score: 6.6 Sequence: ATTGACCGGCCGGTCGGTTTAT
Locus tag: Pden_4799
Name: paaF Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Pden_4800
Name: paaY Funciton: thioesterase superfamily protein
Locus tag: Pden_4801
Name: paaK Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
Locus tag: Pden_4802
Name: paaR Funciton: Transcriptional regulator of phenylacetic acid degradation, TetR family |
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paaF
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Enoyl-CoA hydratase (EC 4.2.1.17)
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paaY
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thioesterase superfamily protein
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paaK
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Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
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paaR
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Transcriptional regulator of phenylacetic acid degradation, TetR family
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Position: -61
Score: 6 Sequence: ATTGACCAATCGGTCGGTGAAT
Locus tag: Pden_4811
Name: paaJ Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: Pden_4810
Name: paaA Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Pden_4809
Name: paaB Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Pden_4808
Name: paaC Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Pden_4807
Name: paaD Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Pden_4806
Name: paaE Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Pden_4805
Name: Pden_4805 Funciton: Phenylacetic acid catabolic protein
Locus tag: Pden_4804
Name: paaZ Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ |
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paaJ
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Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
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paaA
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Phenylacetate-CoA oxygenase, PaaA subunit
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paaB
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Phenylacetate-CoA oxygenase, PaaB subunit
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paaC
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Phenylacetate-CoA oxygenase, PaaC subunit
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paaD
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Phenylacetate-CoA oxygenase, PaaD subunit
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paaE
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Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
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Pden_4805
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Phenylacetic acid catabolic protein
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paaZ
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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Position: -74
Score: 5.9 Sequence: ATTGACCGACCGAACGGTTAAC
Locus tag: Pden_4813
Name: null Funciton: Penicillin G acylase
Locus tag: Pden_4812
Name: paaX Funciton: Phenylacetic acid degradation operon negative regulatory protein paaX |
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Penicillin G acylase
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paaX
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Phenylacetic acid degradation operon negative regulatory protein paaX
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Position: -20
Score: 6.6 Sequence: ATAAACCGACCGGCCGGTCAAT
Locus tag: paaZ2
Name: paaZ2 Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
Locus tag: Pden_4797
Name: livK Funciton: Putative branched-chain amino acid ABC transporter, substrate-binding component
Locus tag: Pden_4796
Name: livH Funciton: Putative branched-chain amino acid ABC transporter, permease component
Locus tag: Pden_4795
Name: livF Funciton: Putative branched-chain amino acid ABC transporter, permease component 2
Locus tag: Pden_4794
Name: livM1 Funciton: utative branched-chain amino acid ABC transporter, ATPase component 1
Locus tag: Pden_4793
Name: livM2 Funciton: utative branched-chain amino acid ABC transporter, ATPase component 2
Locus tag: Pden_4792
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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paaZ2
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Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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livK
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Putative branched-chain amino acid ABC transporter, substrate-binding component
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livH
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Putative branched-chain amino acid ABC transporter, permease component
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livF
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Putative branched-chain amino acid ABC transporter, permease component 2
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livM1
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utative branched-chain amino acid ABC transporter, ATPase component 1
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livM2
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utative branched-chain amino acid ABC transporter, ATPase component 2
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |