Regulon of IscR in Paracoccus denitrificans PD1222

Properties
Regulator type:	Transcription factor
TF locus tag:	Pden_2958
Regulator family:	Rrf2
Regulation mode:	repressor (activator)
Biological process:	Iron-sulfur cluster biogenesis; Iron homeostasis
Effector:	Iron-sulfur cluster redox state; Iron ion, (Fe2+)
Regulog:	IscR - Rhodobacterales
Statistics of regulated genes:
- Genes	12
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 125 sites [see more]

Member of regulog collections

By trascription factor - IscR
By taxonomy - Rhodobacterales
By TF family - Rrf2
By effector - Iron-sulfur cluster redox state
By effector - Iron ion, (Fe2+)
By pathway - Iron-sulfur cluster biogenesis
By pathway - Iron homeostasis

Regulated operons
	Locus Tag	Name	Function
Position: -81 Score: 3.8 Sequence: CCAGAGTTTTTCAATCAAC Locus tag: Pden_1138 Name: araX Funciton: Iron-regulated transcriptional regulator, AraC family
	Pden_1138	araX	Iron-regulated transcriptional regulator, AraC family
Position: -128 Score: 4.1 Sequence: TCCTATTCTTTTTGTCGGA Locus tag: Pden_3522 Name: fecB Funciton: ABC-type Fe3+-hydroxamate transport system, periplasmic component Locus tag: Pden_3523 Name: fecC Funciton: ABC-type Fe3+-siderophore transport system, permease component Locus tag: Pden_3524 Name: fecD Funciton: ABC-type Fe3+-siderophore transport system, permease component Locus tag: Pden_3525 Name: fecE Funciton: ABC Fe+3-siderophore transporter, ATPase subunit
	Pden_3522	fecB	ABC-type Fe3+-hydroxamate transport system, periplasmic component
	Pden_3523	fecC	ABC-type Fe3+-siderophore transport system, permease component
	Pden_3524	fecD	ABC-type Fe3+-siderophore transport system, permease component
	Pden_3525	fecE	ABC Fe+3-siderophore transporter, ATPase subunit
Position: 24 Score: 4.3 Sequence: CCTGAGTTAATAGCTCGGA Locus tag: Pden_1139 Name: fhuA Funciton: Ferric hydroxamate outer membrane receptor FhuA Locus tag: Pden_1140 Name: fhuD Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD Locus tag: Pden_1141 Name: fhuB Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB Locus tag: Pden_1142 Name: fhuC Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
	Pden_1139	fhuA	Ferric hydroxamate outer membrane receptor FhuA
	Pden_1140	fhuD	Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
	Pden_1141	fhuB	Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
	Pden_1142	fhuC	Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Position: -89 Score: 4.1 Sequence: ATTGACAGTTTTACTAAGA Locus tag: Pden_4201 Name: hmuR Funciton: TonB-dependent hemin , ferrichrome receptor
	Pden_4201	hmuR	TonB-dependent hemin , ferrichrome receptor
Position: -164 Score: 4.1 Sequence: TCCGACAAAAAGAATAGGA Locus tag: Pden_3521 Name: RSP_3417 Funciton: Ferrichrome-iron receptor
	Pden_3521	RSP_3417	Ferrichrome-iron receptor
Position: -53 Score: 4.3 Sequence: TCCTAGGAAATTTGTCAGG Locus tag: Pden_4141 Name: hemP Funciton: Hemin uptake protein HemP
	Pden_4141	hemP	Hemin uptake protein HemP

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD