# TF - NsrR: Pden_3024, Pden_1690
>Pden_1689(hmp) Score=4.7 Pos=-71 [Paracoccus denitrificans PD1222]
GATGTATCCAGAATACATG
>Pden_1690(nsrR2) Score=4.7 Pos=-73 [Paracoccus denitrificans PD1222]
CATGTATTCTGGATACATC
>Pden_3025(dnrN) Score=6.1 Pos=-131 [Paracoccus denitrificans PD1222]
TTGGTATTGACAATACCGA
>Pden_3025(dnrN) Score=5.4 Pos=-96 [Paracoccus denitrificans PD1222]
TCGGTATTGCAAGTACCGA
>Pden_3024(nsrR) Score=5.4 Pos=-66 [Paracoccus denitrificans PD1222]
TCGGTACTTGCAATACCGA
>Pden_3024(nsrR) Score=6.1 Pos=-31 [Paracoccus denitrificans PD1222]
TCGGTATTGTCAATACCAA
# TF - NrdR: Pden_1562
>Pden_1384(nrdJ) Score=5 Pos=-168 [Paracoccus denitrificans PD1222]
CCACCAGATCTTGTGT
# TF - Zur: Pden_4139, Pden_1260
>Pden_1338(yciC) Score=5.7 Pos=-33 [Paracoccus denitrificans PD1222]
GTAACGTAATAACATTACATTTA
>Pden_4140(znuA) Score=5.4 Pos=-83 [Paracoccus denitrificans PD1222]
ATGATGTTATATCGTTACATTTT
>Pden_4139(zur) Score=5.3 Pos=-49 [Paracoccus denitrificans PD1222]
TTTATGTTATATCGTAACCCGTC
# TF - LldR: Pden_2929
>Pden_2928(dld) Score=6 Pos=-102 [Paracoccus denitrificans PD1222]
ATGGTCAAATTATTTTACCAA
>Pden_2929(lldR) Score=6.5 Pos=-133 [Paracoccus denitrificans PD1222]
TTGGTAAAATAATTTGACCAT
# TF - HutC: Pden_4940, Pden_0708
>Pden_0710(hutI) Score=4.4 Pos=-73 [Paracoccus denitrificans PD1222]
AATAAGTTTAGACATAGA
>Pden_0709(hutF) Score=4.4 Pos=-41 [Paracoccus denitrificans PD1222]
TCTATGTCTAAACTTATT
>Pden_0709(hutF) Score=4.4 Pos=-64 [Paracoccus denitrificans PD1222]
TCTATGTCTAAACTTATT
>Pden_0710(hutI) Score=4.4 Pos=-50 [Paracoccus denitrificans PD1222]
AATAAGTTTAGACATAGA
# TF - HypR: Pden_4868
>Pden_4864(hypM) Score=3.5 Pos=-111 [Paracoccus denitrificans PD1222]
TTTTGTATATTAGT
>Pden_4868(hypR) Score=3.4 Pos=-41 [Paracoccus denitrificans PD1222]
AGTTGTCGACGTCA
>Pden_4867(hypD) Score=4.8 Pos=-88 [Paracoccus denitrificans PD1222]
CTTTGTCGACAAAT
>Pden_4865(hypH) Score=4 Pos=-94 [Paracoccus denitrificans PD1222]
TTTTGCATACATGA
>Pden_4866(hypS) Score=4 Pos=-53 [Paracoccus denitrificans PD1222]
TCATGTATGCAAAA
# TF - IscR: Pden_2958
>Pden_3522(fecB) Score=4.1 Pos=-128 [Paracoccus denitrificans PD1222]
TCCTATTCTTTTTGTCGGA
>Pden_1139(fhuA) Score=4.3 Pos=24 [Paracoccus denitrificans PD1222]
CCTGAGTTAATAGCTCGGA
>Pden_4201(hmuR) Score=4.1 Pos=-89 [Paracoccus denitrificans PD1222]
ATTGACAGTTTTACTAAGA
>Pden_1138(araX) Score=3.8 Pos=-81 [Paracoccus denitrificans PD1222]
CCAGAGTTTTTCAATCAAC
>Pden_4141(hemP) Score=4.3 Pos=-53 [Paracoccus denitrificans PD1222]
TCCTAGGAAATTTGTCAGG
>Pden_3521(RSP_3417) Score=4.1 Pos=-164 [Paracoccus denitrificans PD1222]
TCCGACAAAAAGAATAGGA
# TF - NagQ: Pden_2475
>Pden_2474(nagK) Score=6.3 Pos=-38 [Paracoccus denitrificans PD1222]
TGGTATTGTTTTGGTATC
>Pden_2473(murQ) Score=-2 Pos=-132 [Paracoccus denitrificans PD1222]
GATACCAAAACAATACCA
# TF - GlcC: Pden_4400
>Pden_4399(glcD) Score=6.1 Pos=-71 [Paracoccus denitrificans PD1222]
ATGTGGTCTGAAAATTATACCAAGA
# TF - NtrC: Pden_4129
>Pden_2032(amtB2) Score=4 Pos=-130 [Paracoccus denitrificans PD1222]
TGCCCTTATTTCGGGCA
>Pden_4131(nifR3) Score=4.3 Pos=-121 [Paracoccus denitrificans PD1222]
TGCCGACTATTTAGGCA
>Pden_4461(glnB) Score=4.4 Pos=-148 [Paracoccus denitrificans PD1222]
CGCACATAATTCAGGCA
>Pden_4461(glnB) Score=4.9 Pos=-128 [Paracoccus denitrificans PD1222]
TGCATAATATTCGGGCA
>Pden_4455(nasT) Score=4 Pos=-140 [Paracoccus denitrificans PD1222]
CGCCCGAACCATGGGCA
# TF - Mur: Pden_1260
>Pden_1260(mur) Score=4.6 Pos=-35 [Paracoccus denitrificans PD1222]
GTTGCAATTTCTTCGCATC
>Pden_1259(sitA) Score=4.6 Pos=-89 [Paracoccus denitrificans PD1222]
GATGCGAAGAAATTGCAAC
>Pden_1259(sitA) Score=4.6 Pos=-60 [Paracoccus denitrificans PD1222]
GTTGAGAATGGTTCGCAGA
>Pden_1260(mur) Score=4.6 Pos=-64 [Paracoccus denitrificans PD1222]
TCTGCGAACCATTCTCAAC
# TF - ModE2: Pden_2664
>Pden_2665 Score=5.2 Pos=-37 [Paracoccus denitrificans PD1222]
GTTATGTCCGTTTGAACATAAT
# TF - LexA: Pden_2142
>Pden_4289(imuA) Score=0.7 Pos=-56 [Paracoccus denitrificans PD1222]
GAACAAATCAGGAAC
>Pden_2142(lexA) Score=1.4 Pos=-47 [Paracoccus denitrificans PD1222]
GAACAATCAACGAAC
>Pden_0597(recA) Score=1 Pos=-77 [Paracoccus denitrificans PD1222]
GAACAACCCGTGAAC
>Pden_0696(ruvC) Score=5.1 Pos=-44 [Paracoccus denitrificans PD1222]
GTTCGCCTTTCGTGC
>Pden_2252(uvrA) Score=4.7 Pos=-81 [Paracoccus denitrificans PD1222]
GTTCCTGTGATGTTC
>Pden_3951(PF04055) Score=4.8 Pos=-27 [Paracoccus denitrificans PD1222]
GTTCTCTAAATGTTC
>Pden_1550(PF06319) Score=4.8 Pos=-26 [Paracoccus denitrificans PD1222]
GTTTCCGTTTCGTTC
# TF - LiuR: Pden_2866
>Pden_2867(liuR) Score=5.3 Pos=5 [Paracoccus denitrificans PD1222]
CCTTACGCGAACGTCAAC
# TF - RutR: Pden_1121
>Pden_1113(pydC) Score=5.1 Pos=-225 [Paracoccus denitrificans PD1222]
TATTGACTGGTTGATAAAAT
# TF - PhnF: Pden_4783
>Pden_4782(phnG) Score=5.6 Pos=-53 [Paracoccus denitrificans PD1222]
TTGTCTAGTTGTATAGAAAA
>Pden_4782(phnG) Score=5.8 Pos=-45 [Paracoccus denitrificans PD1222]
TTGTATAGAAAACTAGACAA
>Pden_4783(phnF) Score=5.4 Pos=-85 [Paracoccus denitrificans PD1222]
TTTTCTATACAACTAGACAA
>Pden_4783(phnF) Score=5.9 Pos=-93 [Paracoccus denitrificans PD1222]
TTGTCTAGTTTTCTATACAA
# TF - PaaR
>Pden_4799(paaF) Score=6.6 Pos=-74 [Paracoccus denitrificans PD1222]
ATTGACCGGCCGGTCGGTTTAT
>paaZ2(paaZ2) Score=6.6 Pos=-20 [Paracoccus denitrificans PD1222]
ATAAACCGACCGGCCGGTCAAT
>Pden_4811(paaJ) Score=6 Pos=-61 [Paracoccus denitrificans PD1222]
ATTGACCAATCGGTCGGTGAAT
>Pden_4813 Score=5.9 Pos=-74 [Paracoccus denitrificans PD1222]
ATTGACCGACCGAACGGTTAAC
# TF - EutR: Pden_0279
>Pden_0280(ehuA) Score=6.2 Pos=-55 [Paracoccus denitrificans PD1222]
ATTGACCTGATTTAAT
>Pden_0280(ehuA) Score=5.9 Pos=-77 [Paracoccus denitrificans PD1222]
ATTGTTATGATATTAT
# TF - EutR: Pden_4542
>Pden_4543(eutA) Score=4.1 Pos=-93 [Paracoccus denitrificans PD1222]
TTCGTAACATTCTTAACAGG
>Pden_4543(eutA) Score=5.1 Pos=-63 [Paracoccus denitrificans PD1222]
TCTGAAAAATAATTGACAGA
>Pden_4542(eutR) Score=4.1 Pos=-48 [Paracoccus denitrificans PD1222]
CCTGTTAAGAATGTTACGAA
>Pden_4542(eutR) Score=5.1 Pos=-78 [Paracoccus denitrificans PD1222]
TCTGTCAATTATTTTTCAGA
# RNA - Cobalamin
>Pden_2530(cfrX) Score=85.2 Pos=-277 [Paracoccus denitrificans PD1222]
CACAGACATGGGGCGCTGGTTCCTGTCCTATGACAGGCTAAGAGGGAATGCGACAGGCAACCGCCTGAAAGCAGCCGCCCCCGCGACCGTGACCGGAAAGGTCGCCCCTCTGCCACTGGCGAAAGCCGGGAAGGCGGGGCGGCCGTGGGCCCAGGCCCGAATCCGCAAGCCGGGAGACCTGCCGGTGCAGAAGGATTGACCGG
>Pden_2524(cbtB) Score=133.6 Pos=-241 [Paracoccus denitrificans PD1222]
TAACATATGCGTGTATCGGTGCCCCTTTCGGGGCCAAAAGGGAATGCGGTGCCGTCTCCGGCGTCTTGGGGACCAAATCCGCAGCCGCCCCCGCGACTGTAGGCGGAGAGCGGACGCCCATCGTGCCACTGGCCATCCGGCCGGGAAGGCGGGCGTCAGCCGTGACCCGCGAGCCAGGAGACCTGCCGATGCGTGAAACCGCAATGT
>Pden_1368(btuB) Score=131.2 Pos=-347 [Paracoccus denitrificans PD1222]
GCCATGAGGGCCGAGCTACGGTTCCGGCGGCGTGCCTCCGGATTAAAAGGGAATCCCGGTGCGCCTGACCTGTTCAGGCAATGCCGGAGCTGCCCCCGCAACTGTATGCGGTGAGTGACGGTCGATCATGCCACTGGCGCGAATGCGCCGGGAAGGCCGGCCCGAACGATGACCCGCAAGCCAGGAGACCTGCCGCAGCAATCACCCATTTC
>Pden_4382(btuB) Score=101.9 Pos=-349 [Paracoccus denitrificans PD1222]
CAATGCGGGGCCGCTACGGTTCCGGCGCGATCTGCCGGATGAAAAGGGAACACCGGCGCGCCCATCGCCGCGATGCGGACGGGCAAGGCCGGGGCTGCCCCCGCAACTGTAGGCGGTGAGCGAAGGCCGAAGGCGCCACTGGGAAGATCCCCGGGAAGGCCGGCCCGAGCGATGATCCGCCAGCCAGGAGACCTGCCGCAGCGATCACCCATTTCCG
>Pden_1362(btuF) Score=104.1 Pos=-293 [Paracoccus denitrificans PD1222]
GCGCTATGGCGGAGTTGTCGGTTTCCGCAAGGAATTGAAAGGGAATCCGCCGGGGCATCAGCCCCGAACCGGAACTGCCCCCGCAACTGTAGGCGGCGAGCAGGGTGCGAAACAGCCACTGTGGCCCATGCCATGGGAAGGCCGCATCCCTGCCGTGACCCGTCAGTCAGGAGACCTGCCGACGCGATGACCAACCCG
>Pden_2980(btuF) Score=101.5 Pos=-322 [Paracoccus denitrificans PD1222]
TACCAAGTCGCTGCATCGGTTTCCGCAAGGAATGAAAAGGGAATCCAGCGCGCCCGATGGGCGCGAAACGGAACTGCCCCCGCAACTGTAGGCGGCGAGCGCGATCTGGCAGGCCACTGGGCACGATGTCCGGGAAGGCAGGATCCGCGCAACGACCCGCCAGTCAGGAGACCTGCCGGCGCGAATTCACCAGAC
>Pden_4375(nrdH) Score=121.4 Pos=-284 [Paracoccus denitrificans PD1222]
CTAACTGCAACGGTCATGGTTGTCCCGGGGCCGACTCGGGGATGAAAAGGGAAGCCGGTGAAAAGCCGGCACTGCCCCCGCAGCTGTAAGCGGAGAGCGACGCCGGATCACCACTGGGGCCACGCGCCCCGGGAAGGCCGGCCAAGCCGAGACCCGCAAGTCAGAAGACCTGCCATGACGCGAAAGGACGAAAC
>Pden_1354(Cseg_1811) Score=132.3 Pos=-326 [Paracoccus denitrificans PD1222]
TTTTACCGTCAGATCAAGGTGCCGGGGAAATCTCCGGGTAAAAGGGAATTCGGTGAGGCTGTCGCCAAATCCGAAGCTGCCCCCGCAACTGTAGGCGGAGAGCCTGTCCGACATGCCACTGGCGCGGATTTCGCGCCGGGAAAGCTGGACCAGGTAAAGATCCGCAAGTCAGGAAACCTGCCTGGATCAATCACCTGTTCCG
>Pden_4827(btuB) Score=127.9 Pos=-408 [Paracoccus denitrificans PD1222]
CTACACGGTCGGGTGACGGTTTCCGATTTCGGAATGAAAAGGGAACGCAGTGCGGACCAGCCGGTCCCATGCTGCGGCTGCCCCCGCAACTGTAGGCGGATAGCCTTTGCCAACGGCCACTGGGTGCGACCCCGGGAAGGCGGCGACAGGCGACGACCCGCGAGCCAGGAGACCTGCCGTCAGCCGTTGTCACGCGTG
>Pden_2989(nrdD) Score=119 Pos=-414 [Paracoccus denitrificans PD1222]
CCCTATATGTAGGCATCACGGTTCTTTCGGGTCGATCCGACCCGAAAGCGAAGAGGGAAGCCGGTGCGCCTTTCGGGGCAAGGCCGGCGCTGCCCCCGCAACTGTAAGCAGCGAGCCTGCGCCGGATCACGCCACTGGTGCCGCACGGCATTGGGAAGGCCGGCAAGGGCAGCGACCTGCGAGCCAGGAGACCTGCCGTGATGATGACGATGAAC
# RNA - serC
>Pden_0813(serC) Score=59.5 Pos=-50 [Paracoccus denitrificans PD1222]
AGCGGGACACGCCGCCCCAACGCGGCGCTTATAGCTGGAAGGCTAACATCATG
# RNA - TPP
>Pden_3673(tenA) Score=52.9 Pos=-196 [Paracoccus denitrificans PD1222]
GCGCCACCAAGGGGAGCCCCGGCAAGGGGCTGAGAAACCGCTGGCCTCGATCGTCCCGGCGACGGGCGGCGCGGTGACCCTTTGAACCTGACCCGGATCATGCCGGCGGAGGAATGGGACAGATGCACCTGCC
>Pden_2944(thiC) Score=51 Pos=-253 [Paracoccus denitrificans PD1222]
CCTCACGTCAGGGGAGTCCCGCCTAGGGGACTGAGAGGCTGACAGGGACCGCCCATGGGCGGTTCCGGTGAAGCGACCCTTTGAACCTGACCCAGTTGATGCTGGCGTAGGAAGACCGAAGGGCAGCTTTCC
>Pden_0042(thiD) Score=82.4 Pos=-145 [Paracoccus denitrificans PD1222]
ACTCATACACTTGGGGAGCCTCGCACGAGGCTGAGAGGTGCCGGGCACCGACCCATCGAACCTGATCCGGGTCATGCCGGCGTAGGGAAGGGTAGAGTGAAGCGG
# RNA - ykkC-yxkD
>Pden_1761(PF00892) Score=39.8 Pos=-148 [Paracoccus denitrificans PD1222]
TGAGTGGTGACTAGGGTTCCGGGCGATCCGCCGCAGGACCGAGCGTTGCAGAGACCGGGGGAGTTCCCTGGCTGCACCCAAGGGACAAAAGCCCAGGGGAGGA
# RNA - FMN
>Pden_4679(ribH2) Score=113.6 Pos=-198 [Paracoccus denitrificans PD1222]
CGTGTTCTCGGGGCGGGGTGCAATTCCCCACCGGCGGTTACAGCCCGCGAGCGCCTGCAATCCGCAGGGTCAGCAGATCCGGTGAAACTCCGGGGCCGACGGTATAGTCCGGATGAAAGAGAATGGACGG
# RNA - Glycine
>Pden_2348(gcvT) Score=57.6 Pos=-223 [Paracoccus denitrificans PD1222]
AGGTCGGAAATCGGGAGACATTGGCGCAAGCCAGGGCCGAAGGAGCAACCGCCCCGGGAATCTCTCAGGCAAAGGGACCGTTTTCCGCCG
>Pden_2348(gcvT) Score=23.2 Pos=-130 [Paracoccus denitrificans PD1222]
GCTCTGGAGAGAGGCGGCTTGCGCCGCCCGCCGAAGGGATAACGATCTCAGGCGCCCCCGTTTCGGGGTAGGGACAGAG
>Pden_0183(dadA) Score=48.4 Pos=-211 [Paracoccus denitrificans PD1222]
ACAGGAGAGTCGGGTTCCCACCCGCGCCGACGGAGCAACGCCCCGGAATCTCTCAGGCACCAGGACTG
>Pden_0183(dadA) Score=64.3 Pos=-141 [Paracoccus denitrificans PD1222]
GGACCGCCACTCTGGAGAGAGATGCGACAGCATCCGCCGAAGGAGAAAGCCGCGAAGCGCGGCGATACTCTCAGGCAAAAGGACAGAGGGGGGATG
# RNA - SAM-SAH
>Pden_1873(metK) Score=60 Pos=-53 [Paracoccus denitrificans PD1222]
GACCGCCACAACGGCTTCCTGGCGTGGCGGCGTCATTTCAACGGAGCATC
# TF - HrcA: Pden_0009
>Pden_3654(groL) Score=7.2 Pos=-396 [Paracoccus denitrificans PD1222]
TTGGCACTCACCCGAGCCGAGTGCCAA
# TF - SmoR: Pden_4846
>Pden_4846(smoR) Score=4.6 Pos=-54 [Paracoccus denitrificans PD1222]
GTCTTTACGCGAGACAATAT
>Pden_4851(Pden_4851) Score=5.4 Pos=-122 [Paracoccus denitrificans PD1222]
AATTTGACACGCGTAAAATA
>Pden_4845(smoE) Score=5.8 Pos=-87 [Paracoccus denitrificans PD1222]
AATTTTTCGCGCGTAAAAAT
# TF - CadR-PbrR: Pden_0211, Pden_2343, Pden_4523
>Pden_2344(cadA) Score=6.1 Pos=-75 [Paracoccus denitrificans PD1222]
AAGCTCTAGTCGCTAGAGGAA
>Pden_0212(cadA) Score=5.8 Pos=-37 [Paracoccus denitrificans PD1222]
AACCTCTAGTTGCTAGAGATC
# TF - Jann_1459: Pden_4766
>Pden_4766(Jann_1459) Score=4.9 Pos=-62 [Paracoccus denitrificans PD1222]
GTCTGCAATCGATTGCAAAC
>Pden_4767(COG1082) Score=4.9 Pos=-54 [Paracoccus denitrificans PD1222]
GTTTGCAATCGATTGCAGAC
# TF - BioR: Pden_2922, Pden_1431
>Pden_2916(bioB) Score=4.2 Pos=-80 [Paracoccus denitrificans PD1222]
TAATAGATAA
>Pden_2916(bioB) Score=4.1 Pos=-37 [Paracoccus denitrificans PD1222]
TTATAGATAC
>Pden_1432(bioY) Score=4.8 Pos=-84 [Paracoccus denitrificans PD1222]
TTATCTATAA
>Pden_1432(bioY) Score=4.4 Pos=-40 [Paracoccus denitrificans PD1222]
TTATAGATAG
>Pden_2922(bioR) Score=4.3 Pos=-39 [Paracoccus denitrificans PD1222]
TTATCGACAA
>Pden_1431(bioR) Score=4.8 Pos=-13 [Paracoccus denitrificans PD1222]
TTATCTATAA
# TF - KglR: Pden_5078
>Pden_5079(Sma0079) Score=6.4 Pos=-52 [Paracoccus denitrificans PD1222]
GATTTAGATCGTTCTAAATC
# TF - CceR (GapR): Pden_1978
>Pden_1952(zwf) Score=4.1 Pos=-65 [Paracoccus denitrificans PD1222]
GCCTGAAACCGCTATCATCC
>Pden_1245(eda) Score=5 Pos=-85 [Paracoccus denitrificans PD1222]
CTCAGTTAACGCTAACACAC
>Pden_1955(edd) Score=5.4 Pos=-48 [Paracoccus denitrificans PD1222]
CAATGTTACCGCTAACAGGA
>Pden_2276(pykA) Score=5.2 Pos=-32 [Paracoccus denitrificans PD1222]
CGACGATAGCGCAAACATGC
>Pden_2852(pckA) Score=4.6 Pos=-132 [Paracoccus denitrificans PD1222]
AAATGATTGCGCTAACCGTC
>Pden_2852(pckA) Score=4.5 Pos=-113 [Paracoccus denitrificans PD1222]
CTCTGATTGCGCTAACCCTG
>Pden_1978(cceR) Score=4.1 Pos=-39 [Paracoccus denitrificans PD1222]
AAAAGATAACGGTAACATGA
>Pden_1920(fba) Score=4.6 Pos=-74 [Paracoccus denitrificans PD1222]
TTCCGTTAGCGCAATCGCGA
>Pden_2946(scrK) Score=4.9 Pos=-77 [Paracoccus denitrificans PD1222]
GGCAGTTACCGCTATCAGGA
>Pden_4465(gapB) Score=4 Pos=-124 [Paracoccus denitrificans PD1222]
CAATTGCACCGCTAACATCG
>Pden_3815(atpH) Score=4.7 Pos=-153 [Paracoccus denitrificans PD1222]
AGGTGTTTGCGCAATCGGTT
# TF - RspR
>Pden_5067(rspR) Score=5.8 Pos=-48 [Paracoccus denitrificans PD1222]
TTTACTAGTATGCAAGTATG
# TF - Pden_0318: Pden_0318
>Pden_0319(COG1914) Score=4.7 Pos=-114 [Paracoccus denitrificans PD1222]
TGTTGTTCAACAATT
>Pden_0318(Pden_0318) Score=4.7 Pos=-194 [Paracoccus denitrificans PD1222]
AATTGTTGAACAACA
# TF - HypR2: Pden_1183
>Pden_1183(hypR2) Score=4.3 Pos=-178 [Paracoccus denitrificans PD1222]
TTTCGTATACTATA
>Pden_1184(hypY) Score=4.3 Pos=-50 [Paracoccus denitrificans PD1222]
TATAGTATACGAAA
# TF - MetR: Pden_2318
>Pden_2319(metF) Score=4.9 Pos=-58 [Paracoccus denitrificans PD1222]
ATGAATTTGTCTCAC
>Pden_2318(metR) Score=4.9 Pos=-47 [Paracoccus denitrificans PD1222]
GTGAGACAAATTCAT
# TF - PdxQ: Pden_4833
>Pden_4832(pdxO2) Score=12.6 Pos=-114 [Paracoccus denitrificans PD1222]
AACTGGACCAT-(13)-AACTGGACATT-(4)-ACCAGCCAGAC
# TF - AnsR: Pden_4243, Pden_4242
>Pden_4244(ansA) Score=5.7 Pos=-64 [Paracoccus denitrificans PD1222]
AGCTGTCAGACAGAT
# TF - Pden_4836: Pden_4836
>Pden_4837(ACIAD1896) Score=11.7 Pos=-112 [Paracoccus denitrificans PD1222]
AACTGTATGGG-(8)-GCCATACGGAT-(6)-AATCGTATCGC
# TF - Pden_3389: Pden_3389
>Pden_3389(Pden_3389) Score=3.9 Pos=-184 [Paracoccus denitrificans PD1222]
ACATTGCATGCAATGT
>Pden_3389(Pden_3389) Score=4.1 Pos=-100 [Paracoccus denitrificans PD1222]
TGTTTGCATGCAACTG
>Pden_3389(Pden_3389) Score=4.5 Pos=-38 [Paracoccus denitrificans PD1222]
AGATTGCATGCAACTT
>Pden_3388 Score=3.9 Pos=-112 [Paracoccus denitrificans PD1222]
ACATTGCATGCAATGT
>Pden_3388 Score=4.1 Pos=-196 [Paracoccus denitrificans PD1222]
CAGTTGCATGCAAACA
# TF - PdxR2: Pden_1434
>Pden_1435(PF00117) Score=14.2 Pos=-86 [Paracoccus denitrificans PD1222]
ACCGGCCTA-(14)-ACTGGCACT-(6)-TAGGCCAGT
# TF - MdcY: Pden_1722
>Pden_1722(mdcY) Score=4.1 Pos=-79 [Paracoccus denitrificans PD1222]
TTGTATATAT
>Pden_1721(matC) Score=4.1 Pos=-122 [Paracoccus denitrificans PD1222]
ATATATACAA
# TF - TauR: Pden_4274, Pden_1648
>Pden_4273(tpa2) Score=8.5 Pos=-93 [Paracoccus denitrificans PD1222]
CTGGCTCCAT------------CTGGCTCTAT
>Pden_1647(tauK) Score=8.6 Pos=-114 [Paracoccus denitrificans PD1222]
CTGGACCTAT------------CTGGACATAT
# TF - FnrN: Pden_1850
>Pden_1850(fnrN) Score=5.3 Pos=-131 [Paracoccus denitrificans PD1222]
ACCTTGACCCAAATCAAATG
>Pden_1851(hemN) Score=5.3 Pos=-51 [Paracoccus denitrificans PD1222]
CATTTGATTTGGGTCAAGGT
>Pden_1822(hemA) Score=5.4 Pos=-40 [Paracoccus denitrificans PD1222]
GGCTTGATGCGTATCAAGGT
>Pden_1849(uspA) Score=5.3 Pos=-146 [Paracoccus denitrificans PD1222]
ACTTTGATCTGCGTCAATCT
>Pden_3636(ompW) Score=5.5 Pos=-51 [Paracoccus denitrificans PD1222]
ATCTTGATCCAGATCAACGT
>Pden_0893(ccpR) Score=5.1 Pos=-141 [Paracoccus denitrificans PD1222]
CATCTGACCCAGATCAAAGC
>Pden_1848(ccoN) Score=5.3 Pos=-124 [Paracoccus denitrificans PD1222]
AGATTGACGCAGATCAAAGT
>Pden_1844(ccoG) Score=5.3 Pos=-70 [Paracoccus denitrificans PD1222]
CGCTTGACGCAGATCAATGC