Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Bacillus halodurans C-125

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ABC3918 1 1
TF AcoR Acetoin Acetoin utilization 1 1
TF AraR Arabinose Arabinose utilization 6 6
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 7
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 3
TF AseR Arsenite Arsenic resistance 1 1
TF BC2903 Multidrug resistance; Multidrug efflux 1 1
TF BH0651 Multidrug resistance; Multidrug efflux 1 1
TF BH1250 Sugar utilization 2 3
TF BH1516 Maltose utilization 3 4
TF BH1940 2 2
TF BceR BceS, sensor histidine kinase (bacitracin) Bacitracin resistance 1 1
TF BirA Biotin Biotin biosynthesis 4 5
TF BkdR Branched-chain amino acid degradation 2 1
TF BltR Multidrug resistance 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 87 56
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 79 24
TF CsoR Copper ion, (Cu+) Copper resistance 3 2
TF CtsR Heat shock Heat shock response 4 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 9 6
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 4 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 7 4
TF Fnr Oxygen Anaerobic metabolism 5 6
TF FruR Fructose-6-phosphate Fructose utilization 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 15 17
TF GamR Glucosamine-6-phosphate Glucosamine utilization 4 7
TF GanR Beta-galactosides Galactan utilization 2 1
TF GlcR 1 1
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 5 7
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GmuR Glucomannan utilization 1 1
TF HisR Histidine Histidine biosynthesis 3 3
TF HrcA Heat shock Heat shock response 3 3
TF IolR1 Inositol utilization 5 3
TF IolR2 Inositol utilization 4 2
TF KipR Sporulation 4 1
TF KojR Kojibiose Kojibiose utilization 2 3
TF LexA DNA damage SOS response 24 15
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 2 1
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 1 2
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 4 4
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MsmR Alpha-galactosides Alpha-galactosides utilization 2 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 3
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 3 2
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 8 11
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 9 9
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 6 3
TF RhaR Rhamnulose-1-phosphate Rhamnose utilization 2 1
TF RmgR Rhamnogalacturonides utilization 2 1
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 2 4
TF ScrR2 Sucrose-6-phosphate Sucrose utilization 1 2
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF SinR SinI, antirepressor protein Biofilm formation 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 38 34
TF TreR Trehalose-6-phosphate Trehalose utilization 2 3
TF UxuR Aldotetraouronic acid Glucuronate utilization 3 2
TF XylR Xylose Xylose utilization 6 4
TF YdfD/YisV Metabolite transport 2 2
TF YdfF 2 2
TF YdfL Multidrug resistance 2 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhcF2 Multidrug resistance; Multidrug efflux 1 3
TF YhgD 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 11 4
TF YvcP YvcQ, sensor histidine kinase Bacitracin resistance 1 1
TF YybA Polyamine homeostasis 2 4
TF YybR/YdeP Multidrug resistance 3 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 7 5
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 2 1
RNA Glycine Glycine Glycine metabolism 2 2
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 4 4
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 1 1
RNA Purine Adenine; Guanine Purine metabolism 7 5
RNA PyrR PyrR Pyrimidine metabolism 3 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 13 5
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 2 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 1 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 4 1
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 3 2
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 2 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 2
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 1
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 4 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 7 4
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 3 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 4 2
RNA ylbH 1 1
RNA yybP-ykoY 1 1
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