Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CodY in Bacillus halodurans C-125

Properties
Regulator type: Transcription factor
TF locus tag: BH2462
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Regulog: CodY - Bacillales
Statistics of regulated genes:
- Genes 40
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 445 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -258
Score: 4.4
Sequence: TATTTTTTGAAAAAA
Locus tag: BH3820
Name: gltO
Funciton: Proton/sodium-glutamate symport protein
BH3820
gltO
Proton/sodium-glutamate symport protein
Position: -217
Score: 4.3
Sequence: AATAGTCAAATTATT
Position: -111
Score: 4.5
Sequence: TATTTTTTGACTATT
Locus tag: BH3062
Name: ilvD
Funciton: Dihydroxy-acid dehydratase (EC 4.2.1.9)
BH3062
ilvD
Dihydroxy-acid dehydratase (EC 4.2.1.9)
Position: -114
Score: 4.6
Sequence: AATTTTATAAAAAAT
Locus tag: BH3823
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
BH3823
pta
Phosphate acetyltransferase (EC 2.3.1.8)
Position: -125
Score: 4.5
Sequence: TATTTTCTAAAGATT
Locus tag: BH0916
Name: chi
Funciton: Chitinase (EC 3.2.1.14)
BH0916
chi
Chitinase (EC 3.2.1.14)
Position: -46
Score: 4.5
Sequence: ATTTGTCAAAATATT
Locus tag: BH0030
Name: dppC
Funciton: Oligopeptide ABC transporter permease
Locus tag: BH0029
Name: dppB
Funciton: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
Locus tag: BH0028
Name: oppD
Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: BH0027
Name: oppF
Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
BH0030
dppC
Oligopeptide ABC transporter permease
BH0029
dppB
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
BH0028
oppD
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
BH0027
oppF
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Position: -134
Score: 4.8
Sequence: AATTTTCAGAAAATC
Locus tag: BH3488
Name: fadN
Funciton: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Locus tag: BH3487
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Locus tag: BH3486
Name: fadE
Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
BH3488
fadN
Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
BH3487
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
BH3486
fadE
Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -148
Score: 4.7
Sequence: ATTTTTTAAAAAATT
Locus tag: BH1185
Name: hpr
Funciton: Transcriptional repressor of sporulation and extracellular protein, MarR family
BH1185
hpr
Transcriptional repressor of sporulation and extracellular protein, MarR family
Position: -114
Score: 4.5
Sequence: ATTTTTCAGATAAAT
Locus tag: BH1827
Name: mcpC
Funciton: Methyl-accepting chemotaxis protein McpC
BH1827
mcpC
Methyl-accepting chemotaxis protein McpC
Position: -89
Score: 5
Sequence: AATTTTTTTAAAATT
Locus tag: BH2773
Name: spo0A
Funciton: Stage 0 sporulation two-component response regulator (Spo0A)
BH2773
spo0A
Stage 0 sporulation two-component response regulator (Spo0A)
Position: -121
Score: 4.7
Sequence: ATTTGTCAAAAAATT
Locus tag: BH2374
Name: BH2374
Funciton: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Locus tag: BH2373
Name: BH2373
Funciton: 2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
BH2374
BH2374
2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
BH2373
BH2373
2-oxoglutarate oxidoreductase, beta subunit (EC 1.2.7.3)
Position: -240
Score: 4.5
Sequence: AATTTTCGAAAAATA
Position: -62
Score: 5
Sequence: AATTTTCTGAATATA
Locus tag: BH3439
Name: BH3439
Funciton: Sodium/proline symporter
BH3439
BH3439
Sodium/proline symporter
Position: -32
Score: 4.3
Sequence: TATTTTCAAAATAGT
Locus tag: BH0347
Name: oppA
Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Locus tag: BH0348
Name: oppB
Funciton: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Locus tag: BH0349
Name: oppC
Funciton: Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Locus tag: BH0350
Name: appD
Funciton: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
Locus tag: BH0351
Name: oppF
Funciton: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
Locus tag: BH0352
Name: BH0352
Funciton: Carboxypeptidase G2
BH0347
oppA
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
BH0348
oppB
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
BH0349
oppC
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
BH0350
appD
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
BH0351
oppF
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
BH0352
BH0352
Carboxypeptidase G2
Position: -123
Score: 4.4
Sequence: ATTTATCAGTAAATT
Locus tag: BH1831
Name: lutP
Funciton: L-lactate permease
Locus tag: BH1832
Name: lutA
Funciton: Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Locus tag: BH1833
Name: lutB
Funciton: Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
Locus tag: BH1834
Name: lutC
Funciton: Predicted L-lactate dehydrogenase, hypothetical protein subunit
Locus tag: BH1835
Name: lutR
Funciton: Transcriptional regulator of L-lactate utilization, GntR family
BH1831
lutP
L-lactate permease
BH1832
lutA
Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit
BH1833
lutB
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit
BH1834
lutC
Predicted L-lactate dehydrogenase, hypothetical protein subunit
BH1835
lutR
Transcriptional regulator of L-lactate utilization, GntR family
Position: -295
Score: 4.5
Sequence: AATATTTTGACAAAT
Locus tag: BH0031
Name: oppA2
Funciton: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
BH0031
oppA2
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Position: -183
Score: 4.5
Sequence: TATATTCATAATATT
Position: -174
Score: 4.8
Sequence: AATATTTATAAAATT
Locus tag: BH3819
Name: pelB
Funciton: Pectate lyase precursor (EC 4.2.2.2)
BH3819
pelB
Pectate lyase precursor (EC 4.2.2.2)
Position: -94
Score: 4.5
Sequence: AAATGTCAGAAAAAT
Locus tag: BH1728
Name: gltA
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: BH1729
Name: gltB
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
BH1728
gltA
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
BH1729
gltB
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -51
Score: 4.5
Sequence: TATTATTTGAATATT
Locus tag: BH4033
Name: glyP
Funciton: Sodium/glycine symporter GlyP
BH4033
glyP
Sodium/glycine symporter GlyP
Position: -232
Score: 4.3
Sequence: TATTTTCAGAATTTA
Locus tag: BH2206
Name: odhA
Funciton: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Locus tag: BH2205
Name: odhB
Funciton: 2-oxoglutarate dehydrogenase E2 component
BH2206
odhA
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
BH2205
odhB
2-oxoglutarate dehydrogenase E2 component
Position: -65
Score: 4.3
Sequence: AATATTCAAAATAAA
Locus tag: BH3201
Name: ytcI
Funciton: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
BH3201
ytcI
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Position: 26
Score: 4.4
Sequence: ATTTTTCAGTAAATA
Locus tag: BH0858
Name: yocS
Funciton: Sodium-dependent transporter
BH0858
yocS
Sodium-dependent transporter
Position: -47
Score: 4.3
Sequence: AAAATTCTGATAATA
Locus tag: BH3406
Name: yuiA
Funciton: Conserved hypothetical protein
Locus tag: BH3405
Name: yuiB
Funciton: Hypothetical membrane protein
Locus tag: BH3404
Name: yuiC
Funciton: Cell wall-binding protein
BH3406
yuiA
Conserved hypothetical protein
BH3405
yuiB
Hypothetical membrane protein
BH3404
yuiC
Cell wall-binding protein
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