Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of TnrA in Bacillus halodurans C-125

Properties
Regulator type: Transcription factor
TF locus tag: BH1494
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Regulog: TnrA - Bacillales
Statistics of regulated genes:
- Genes 50
- Operons 21
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 304 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -191
Score: 3.9
Sequence: TGTCATTTAATGCATCA
Locus tag: BH1772
Name: alsT
Funciton: Sodium/alanine symporter family protein
BH1772
alsT
Sodium/alanine symporter family protein
Position: -260
Score: 4.5
Sequence: TGTCATAAAGCCTAACA
Position: -71
Score: 4.2
Sequence: TATCAGAAAATATAAAA
Locus tag: BH2309
Name: pucH
Funciton: Allantoinase (EC 3.5.2.5)
Locus tag: BH2308
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
BH2309
pucH
Allantoinase (EC 3.5.2.5)
BH2308
arcD
Arginine/ornithine antiporter ArcD
Position: -158
Score: 5.6
Sequence: TGTCAGATTATCTTACA
Locus tag: BH2360
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
BH2360
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Position: -217
Score: 4.2
Sequence: TGTTAGCCTATTTGACA
Position: -127
Score: 5.5
Sequence: TGTCATAATATCTAACA
Locus tag: BH3820
Name: gltT
Funciton: H(+)/sodium-glutamate symporter
BH3820
gltT
H(+)/sodium-glutamate symporter
Position: -93
Score: 4.1
Sequence: TGCTAGAAATTCTGGCA
Locus tag: BH3061
Name: ilvB
Funciton: Acetolactate synthase large subunit (EC 2.2.1.6)
BH3061
ilvB
Acetolactate synthase large subunit (EC 2.2.1.6)
Position: -178
Score: 4.6
Sequence: TGTTAGTAGATATAACA
Locus tag: BH0421
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: BH0420
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
BH0421
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
BH0420
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -145
Score: 4.6
Sequence: TGTTATATCTACTAACA
Locus tag: BH0422
Name: nagP
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
BH0422
nagP
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -80
Score: 4.6
Sequence: TGTAAGATATCCTCCCA
Locus tag: BH0612
Name: BH0612
Funciton: Nitrate/nitrite transporter
Locus tag: BH0613
Name: nasD
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: BH0614
Name: nasE
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Locus tag: BH0615
Name: nasC
Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
BH0612
BH0612
Nitrate/nitrite transporter
BH0613
nasD
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
BH0614
nasE
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
BH0615
nasC
Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
Position: -138
Score: 4
Sequence: TGTCAGATATAGGCACA
Position: -113
Score: 4.9
Sequence: TGTCTGATTATCTGACA
Position: -41
Score: 4.3
Sequence: TATTAGAAAAACTTACA
Locus tag: BH3834
Name: nrgA
Funciton: Ammonium transporter
Locus tag: BH3833
Name: BH3833
Funciton: Predicted nucleotidyltransferase DUF294 family
Locus tag: BH3832
Name: dpo3
Funciton: DNA polymerase III, epsilon subunit
BH3834
nrgA
Ammonium transporter
BH3833
BH3833
Predicted nucleotidyltransferase DUF294 family
BH3832
dpo3
DNA polymerase III, epsilon subunit
Position: -180
Score: 4.3
Sequence: TGTGAGATAATTTAGCA
Locus tag: BH3641
Name: BH3641
Funciton: Transcriptional regulator, Lrp/AsnC family
Locus tag: BH3640
Name: oppD
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: BH3639
Name: oppF
Funciton: Oligopeptide ABC transporter ATP-binding protein
Locus tag: BH3638
Name: appB
Funciton: Oligopeptide ABC transporter (permease)
Locus tag: BH3637
Name: oppC
Funciton: Oligopeptide ABC transporter permease
Locus tag: BH3636
Name: oppA
Funciton: Oligopeptide ABC transporter substrate-binding protein
BH3641
BH3641
Transcriptional regulator, Lrp/AsnC family
BH3640
oppD
Oligopeptide ABC transporter ATP-binding protein
BH3639
oppF
Oligopeptide ABC transporter ATP-binding protein
BH3638
appB
Oligopeptide ABC transporter (permease)
BH3637
oppC
Oligopeptide ABC transporter permease
BH3636
oppA
Oligopeptide ABC transporter substrate-binding protein
Position: -301
Score: 4.8
Sequence: TGTTAGGATTTTTAACA
Position: -196
Score: 4.2
Sequence: TGTTAAAAAACTTCACA
Locus tag: BH0758
Name: BH0758
Funciton: Uricase (EC 1.7.3.3)
Locus tag: BH0759
Name: pucL
Funciton: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
Locus tag: BH0760
Name: pucM
Funciton: 5-hydroxyisourate hydrolase
Locus tag: BH0761
Name: BH0761
Funciton: N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)
Locus tag: BH0762
Name: pucG
Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
BH0758
BH0758
Uricase (EC 1.7.3.3)
BH0759
pucL
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase (EC 4.1.1.n1) / Uricase (EC 1.7.3.3)
BH0760
pucM
5-hydroxyisourate hydrolase
BH0761
BH0761
N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87)
BH0762
pucG
Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Position: -245
Score: 4
Sequence: TGATAAGTTACCTTACA
Locus tag: BH0746
Name: BH0746
Funciton: N-ethylammeline chlorohydrolase
BH0746
BH0746
N-ethylammeline chlorohydrolase
Position: -191
Score: 4.2
Sequence: TGTGAAGTTTTTTAACA
Position: -86
Score: 4.8
Sequence: TGTTAAAAATCCTAACA
Position: 31
Score: 4.5
Sequence: TGTTAGATCTTCCAACA
Locus tag: BH0757
Name: pucR
Funciton: Transcriptional regulator of the purine degradation operon, PucR family
BH0757
pucR
Transcriptional regulator of the purine degradation operon, PucR family
Position: -216
Score: 4.4
Sequence: TGCAAGAAAATGTCACA
Locus tag: BH1368
Name: yqzL
Funciton: Hypothetical protein
Locus tag: BH1369
Name: recO
Funciton: DNA recombination and repair protein RecO
BH1368
yqzL
Hypothetical protein
BH1369
recO
DNA recombination and repair protein RecO
Position: -110
Score: 5.5
Sequence: TGTAAGAAAATCTAACA
Locus tag: BH1494
Name: tnrA
Funciton: Transcriptional regulator of nitrogen assimilation, MerR family
BH1494
tnrA
Transcriptional regulator of nitrogen assimilation, MerR family
Position: -192
Score: 4.5
Sequence: TGTTATCTTTGATGACA
Position: -157
Score: 5
Sequence: TGTTAGAAAAGATTACA
Position: -88
Score: 4.4
Sequence: TGTAACGATTTCTAACG
Locus tag: BH0251
Name: urtA
Funciton: Urea ABC transporter, urea binding protein
Locus tag: BH0250
Name: urtB
Funciton: Urea ABC transporter, permease protein UrtB
Locus tag: BH0249
Name: urtC
Funciton: Urea ABC transporter, permease protein UrtC
Locus tag: BH0248
Name: utrD
Funciton: Urea ABC transporter, ATPase protein UrtD
Locus tag: BH0247
Name: urtE
Funciton: Urea ABC transporter, ATPase protein UrtE
BH0251
urtA
Urea ABC transporter, urea binding protein
BH0250
urtB
Urea ABC transporter, permease protein UrtB
BH0249
urtC
Urea ABC transporter, permease protein UrtC
BH0248
utrD
Urea ABC transporter, ATPase protein UrtD
BH0247
urtE
Urea ABC transporter, ATPase protein UrtE
Position: -165
Score: 4.4
Sequence: CGTTAGAAATCGTTACA
Position: -96
Score: 5
Sequence: TGTAATCTTTTCTAACA
Position: -61
Score: 4.5
Sequence: TGTCATCAAAGATAACA
Locus tag: BH0252
Name: ureA
Funciton: Urease gamma subunit (EC 3.5.1.5)
Locus tag: BH0253
Name: ureB
Funciton: Urease beta subunit (EC 3.5.1.5)
Locus tag: BH0254
Name: ureC
Funciton: Urease alpha subunit (EC 3.5.1.5)
Locus tag: BH0255
Name: ureE
Funciton: Urease accessory protein UreE
Locus tag: BH0256
Name: ureF
Funciton: Urease accessory protein UreF
Locus tag: BH0257
Name: ureG
Funciton: Urease accessory protein UreG
Locus tag: BH0258
Name: ureD
Funciton: Urease accessory protein UreD
BH0252
ureA
Urease gamma subunit (EC 3.5.1.5)
BH0253
ureB
Urease beta subunit (EC 3.5.1.5)
BH0254
ureC
Urease alpha subunit (EC 3.5.1.5)
BH0255
ureE
Urease accessory protein UreE
BH0256
ureF
Urease accessory protein UreF
BH0257
ureG
Urease accessory protein UreG
BH0258
ureD
Urease accessory protein UreD
Position: -87
Score: 5.1
Sequence: CGTCATAAAATCTAACA
Locus tag: BH1073
Name: ysnE
Funciton: GNAT family acetyltransferase
BH1073
ysnE
GNAT family acetyltransferase
Position: -86
Score: 4.1
Sequence: TGTGAGAATACCTCGCA
Locus tag: BH3406
Name: yuiA
Funciton: Uncharacterized conserved protein contain two CXXC motifs
Locus tag: BH3405
Name: yuiB
Funciton: Hypothetical protein
Locus tag: BH3404
Name: yuiC
Funciton: Hypothetical protein
BH3406
yuiA
Uncharacterized conserved protein contain two CXXC motifs
BH3405
yuiB
Hypothetical protein
BH3404
yuiC
Hypothetical protein
Position: -277
Score: 4.3
Sequence: TGGCAAAAAAAGTGACA
Position: -125
Score: 4.3
Sequence: TGACAGATTTATTTACA
Locus tag: BH3408
Name: yumC
Funciton: Thioredoxin reductase (EC 1.8.1.9)
BH3408
yumC
Thioredoxin reductase (EC 1.8.1.9)
Position: -103
Score: 5.7
Sequence: TGTCAGATAATCTAACA
Position: -33
Score: 4.9
Sequence: TGTCACATTACATTACA
Locus tag: BH3867
Name: glnA2
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
BH3867
glnA2
Glutamine synthetase type I (EC 6.3.1.2)
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