Regulons of Reinekea sp. MED297
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| TF |
BirA |
Biotin |
Biotin biosynthesis |
3 |
2 |
| TF |
FabR2 |
Unsaturated acyl-CoA; Unsaturated acyl-ACP |
Fatty acid biosynthesis |
3 |
2 |
| TF |
FruR |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
Fructose utilization |
3 |
4 |
| TF |
HexR |
2-keto-3-deoxy-6-phosphogluconate |
Central carbohydrate metabolism |
23 |
17 |
| TF |
HutC |
cis-Urocanic acid |
Histidine utilization |
2 |
2 |
| TF |
IscR |
Iron-sulfur cluster redox state |
Iron-sulfur cluster biogenesis |
4 |
4 |
| TF |
LexA |
DNA damage |
SOS response |
10 |
9 |
| TF |
LiuR |
|
Branched-chain amino acid degradation |
6 |
6 |
| TF |
MetR |
Homocysteine |
Methionine biosynthesis |
2 |
4 |
| TF |
NagC |
N-acetylglucosamine-6-phosphate |
N-acetylglucosamine utilization |
5 |
5 |
| TF |
NagQ |
N-acetylglucosamine |
N-acetylglucosamine utilization |
5 |
5 |
| TF |
NrdR |
Deoxyribonucleotides |
Deoxyribonucleotide biosynthesis |
2 |
4 |
| TF |
NsrR |
Nitric oxide |
Nitrosative stress response |
2 |
2 |
| TF |
NtrC |
Phosphorylated NtrB, signal histidine kinase |
Nitrogen assimilation |
4 |
5 |
| TF |
PrpR |
2-methylcitrate |
Methylcitrate utilization |
3 |
4 |
| TF |
PsrA |
Oleate |
Fatty acid degradation |
12 |
11 |
| TF |
RutR |
Uracil |
Pyrimidine utilization |
5 |
3 |
| TF |
SahR |
S-adenosylhomocysteine |
Methionine metabolism |
3 |
2 |
| TF |
SoxR |
Paraquat |
Superoxide stress response |
1 |
1 |
| TF |
TrpR |
Tryptophan |
Tryptophan biosynthesis |
1 |
1 |
| TF |
YjiR |
|
Metabolite transport |
1 |
1 |
| TF |
ZntR |
Zinc ion, (Zn2+) |
Zinc resistance |
1 |
1 |
| TF |
Zur |
Zinc ion, (Zn2+) |
Zinc homeostasis |
4 |
4 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
2 |
1 |
| RNA |
MOCO_RNA_motif |
Molybdenum |
Molybdopterin biosynthesis; Molybdenum homeostasis |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
3 |
2 |
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