Regulon of PsrA in Reinekea sp. MED297

Properties
Regulator type:	Transcription factor
TF locus tag:	MED297_15989
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	10
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 67 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -152 Score: 6 Sequence: AATCAAACAATCGTTTGAAA Position: -139 Score: 5.1 Sequence: TTTGAAACTGGTGTTTGATT Locus tag: MED297_15730 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	MED297_15730	fadB	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -205 Score: 5.9 Sequence: ATTAAAACAACTGTTTGAAA Locus tag: MED297_16319 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: MED297_16314 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	MED297_16319	etfB	Electron transfer flavoprotein, beta subunit
	MED297_16314	etfA	Electron transfer flavoprotein, alpha subunit
Position: -67 Score: 5.8 Sequence: ATTCAAACGCGCGTTTAAAT Locus tag: MED297_00330 Name: null Funciton: enoyl-CoA hydratase/isomerase family protein
	MED297_00330		enoyl-CoA hydratase/isomerase family protein
Position: -112 Score: 5.1 Sequence: TTTTATACGTCTGTTTCAAA Position: -99 Score: 6.1 Sequence: TTTCAAACAATTGTTTGATT Locus tag: MED297_16784 Name: scp Funciton: Sterol-binding domain protein
	MED297_16784	scp	Sterol-binding domain protein
Position: -95 Score: 5.7 Sequence: TATCAAACGACCGTTTTAAT Locus tag: MED297_17502 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	MED297_17502	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -122 Score: 6.3 Sequence: TTTCAAACGATCGTTTGAAT Locus tag: MED297_12452 Name: acdH1 Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	MED297_12452	acdH1	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -55 Score: 6.2 Sequence: ATTCAAACGACCGTTTGAAT Locus tag: MED297_20722 Name: null Funciton: TesB-like acyl-CoA thioesterase 1
	MED297_20722		TesB-like acyl-CoA thioesterase 1
Position: -157 Score: 5.8 Sequence: TTTCAAACAGTTGTTTTAAT Locus tag: MED297_16324 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	MED297_16324	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -32 Score: 6.1 Sequence: TTTAAAACGATCGTTTGAAA Locus tag: MED297_15989 Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
	MED297_15989	psrA	Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD