Regulon of HexR in Reinekea sp. MED297
| Regulator type: | Transcription factor |
| TF locus tag: | MED297_14205 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Regulog: | HexR - Oceanospirillales/Alteromonadales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 14 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - HexR
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -138
Score: 4.8 Sequence: TGGTAATAAAAATACAA
Locus tag: MED297_17772
Name: gapB Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -36
Score: 5.2 Sequence: TTGTAATTTTCCTACAT
Locus tag: MED297_12602
Name: gpmM Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
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gpmM
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2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
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Position: -419
Score: 4.5 Sequence: TTGTAGGAAATTCACAA
Position: -223
Score: 4.1 Sequence: TTGTAGTAAAGTTACTC
Locus tag: MED297_14210
Name: glk Funciton: Glucokinase (EC 2.7.1.2) |
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glk
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Glucokinase (EC 2.7.1.2)
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Position: -54
Score: 4.5 Sequence: TTGTGAATTTCCTACAA
Locus tag: MED297_14205
Name: hexR Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Locus tag: MED297_14200
Name: pykA Funciton: Pyruvate kinase (EC 2.7.1.40) |
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hexR
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Central carbohydrate metabolism transcription regulator HexR, RpiR family
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pykA
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Pyruvate kinase (EC 2.7.1.40)
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Position: -167
Score: 5.1 Sequence: TTGAAATTTTACTACAA
Locus tag: MED297_12237
Name: oxlT Funciton: Putative oxalate:formate antiporter |
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oxlT
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Putative oxalate:formate antiporter
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Position: -95
Score: 5.4 Sequence: TTGTAATAAAATTACAT
Locus tag: MED297_10216
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3) |
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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Position: -122
Score: 5.5 Sequence: CTGTAATAAAACTACAA
Locus tag: MED297_14225
Name: ugpC Funciton: SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3) |
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ugpC
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SN-glycerol-3-phosphate transport ATP-binding protein UgpC (TC 3.A.1.1.3)
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Position: -478
Score: 4.9 Sequence: TCGTAATATCACTACAA
Position: -223
Score: 4.2 Sequence: CTGTAGTTTAGTTTCAG
Locus tag: MED297_10936
Name: pckA Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
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pckA
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Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
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Position: -143
Score: 5 Sequence: TTGTAATTTTGTTACAT
Locus tag: MED297_03767
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Position: -136
Score: 4.4 Sequence: TTGTAGTTTACTTTCAT
Position: -60
Score: 4.7 Sequence: TTGTAATTTTACTACGT
Locus tag: MED297_14320
Name: gapA Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
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gapA
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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Position: -222
Score: 4.3 Sequence: TCGTAATATTCCTACGA
Locus tag: MED297_15774
Name: gltA Funciton: Citrate synthase (si) (EC 2.3.3.1) |
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gltA
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Citrate synthase (si) (EC 2.3.3.1)
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Position: -196
Score: 4.9 Sequence: TTGTAGTTTTCTTACAC
Locus tag: MED297_08611
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -346
Score: 4.9 Sequence: ATGTAATTAAATTACAT
Locus tag: MED297_17617
Name: pykF Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pykF
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Pyruvate kinase (EC 2.7.1.40)
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Position: -101
Score: 5.2 Sequence: TTGTAAGAAAACTACAT
Locus tag: MED297_13507
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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eno
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Enolase (EC 4.2.1.11)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |