Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Collections of regulogs classified by taxonomic group

Each taxonomy collection organizes all reconstructed regulogs for a given set of taxonomically related microbial genomes. The taxonomy collections represent results of large-scale reconstruction of regulon operated by either transcription factors or RNA regulatory elements. The taxonomical collections of regulons are valuable for modeling the evolution of transcriptional regulatory networks and could be used as a framework for interpretation of high-throughput gene expression data.

Reconstructed Studied
Taxonomic group TF regulogs (regulons) RNA regulogs (regulons) Total regulogs (regulons) Genomes
Alcaligenaceae 25 (60) 0 (0) 25 (60) 3
Alteromonadales 50 (231) 3 (13) 53 (244) 9
Archaeoglobales 2 (6) 0 (0) 2 (6) 3
Bacillales 154 (901) 39 (358) 193 (1259) 11
Bacteroidaceae 38 (223) 2 (22) 40 (245) 11
Bifidobacteriaceae 68 (299) 2 (18) 70 (317) 10
Burkholderia 75 (375) 9 (67) 84 (442) 8
Campylobacteraceae 0 (0) 2 (4) 2 (4) 9
Caulobacterales 33 (100) 8 (26) 41 (126) 4
Chlamydiales 4 (21) 0 (0) 4 (21) 7
Chlorobiales 5 (46) 6 (45) 11 (91) 11
Chloroflexi 30 (107) 17 (65) 47 (172) 5
Clostridia-1 33 (160) 0 (0) 33 (160) 8
Clostridia-2 19 (40) 1 (3) 20 (43) 3
Clostridia-3 19 (190) 2 (28) 21 (218) 14
Clostridiaceae 0 (0) 40 (566) 40 (566) 20
Comamonadaceae 72 (316) 4 (26) 76 (342) 11
Corynebacteriaceae 59 (262) 13 (56) 72 (318) 8
Cyanobacteria 19 (182) 11 (64) 30 (246) 14
Deinococcus-Thermus 10 (29) 13 (44) 23 (73) 5
Desulfovibrionales 101 (428) 9 (43) 110 (471) 10
Desulfuromonadales 19 (111) 3 (18) 22 (129) 9
Enterobacteriales 127 (812) 18 (147) 145 (959) 12
Enterococcaceae 15 (24) 0 (0) 15 (24) 2
Flavobacteria 4 (10) 0 (0) 4 (10) 19
Francisellaceae 2 (4) 3 (6) 5 (10) 3
Frankineae/Propionibacterineae/Pseudonocardiaceae 29 (123) 0 (0) 29 (123) 9
Halobacteriales 3 (32) 0 (0) 3 (32) 11
Helicobacteraceae 0 (0) 2 (3) 2 (3) 8
Lactobacillaceae 82 (485) 39 (409) 121 (894) 15
Listeriaceae 25 (94) 0 (0) 25 (94) 4
Methanobacteriales 1 (5) 0 (0) 1 (5) 5
Methanococcales 0 (0) 0 (0) 0 (0) 0
Methanomicrobiales 2 (10) 0 (0) 2 (10) 5
Methanosarcinales 2 (9) 0 (0) 2 (9) 6
Micrococcineae 40 (220) 0 (0) 40 (220) 14
Moraxellaceae 29 (58) 4 (8) 33 (66) 4
Mycobacteriaceae 30 (154) 12 (80) 42 (234) 9
Nocardiaceae 35 (114) 0 (0) 35 (114) 4
Oceanospirillales/Alteromonadales 72 (247) 3 (16) 75 (263) 12
Pasteurellales 31 (181) 11 (82) 42 (263) 9
Planctomycetes 2 (9) 0 (0) 2 (9) 5
Pseudomonadaceae 71 (338) 9 (58) 80 (396) 8
Psychromonadaceae/Aeromonadales 56 (194) 3 (16) 59 (210) 6
Ralstonia 69 (277) 10 (46) 79 (323) 6
Rhizobiales 97 (539) 12 (124) 109 (663) 15
Rhodobacterales 76 (386) 13 (115) 89 (501) 15
Rhodospirillales 40 (154) 3 (14) 43 (168) 9
Shewanellaceae 90 (911) 15 (214) 105 (1125) 16
Sphingobacteria 6 (14) 0 (0) 6 (14) 8
Sphingomonadales 28 (108) 2 (7) 30 (115) 7
Staphylococcaceae 52 (281) 29 (194) 81 (475) 7
Streptococcaceae 70 (595) 29 (330) 99 (925) 15
Streptococcus 0 (0) 0 (0) 0 (0) 0
Streptomycetaceae 36 (120) 3 (8) 39 (128) 4
Sulfolobales 3 (15) 0 (0) 3 (15) 5
Thermoanaerobacterales 16 (71) 3 (19) 19 (90) 7
Thermococcales 4 (28) 0 (0) 4 (28) 7
Thermoproteales 3 (14) 0 (0) 3 (14) 5
Thermotogales 34 (245) 13 (74) 47 (319) 11
Various betaproteobacteria 47 (158) 4 (24) 51 (182) 12
Vibrionales 70 (444) 17 (140) 87 (584) 10
Xanthomonadales 42 (106) 4 (10) 46 (116) 4
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