Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Collection of regulogs in Halobacteriales taxonomic group

General statistics
Genomes 11
TF regulogs 3
TF regulons 32
TF binding sites 145
RNA regulogs 0
RNA regulons 0
RNA sites 0

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Haloarcula marismortui ATCC 43049 3 14 0 0 3 14
Halobacterium salinarum R1 3 13 0 0 3 13
Halobacterium sp. NRC-1 3 13 0 0 3 13
Haloferax volcanii DS2 3 11 0 0 3 11
Halomicrobium mukohataei DSM 12286 3 15 0 0 3 15
Haloquadratum walsbyi DSM 16790 3 13 0 0 3 13
Halorhabdus utahensis DSM 12940 2 8 0 0 2 8
Halorubrum lacusprofundi ATCC 49239 3 13 0 0 3 13
Haloterrigena turkmenica DSM 5511 3 13 0 0 3 13
Natrialba magadii ATCC 43099 3 12 0 0 3 12
Natronomonas pharaonis DSM 2160 3 20 0 0 3 20
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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Genomic distribution of regulons
Family Type Regulator Function
[Other] TF RbkR
1 RbkR

Haloarcula marismortui ATCC 43049
1 RbkR

Halobacterium salinarum R1
1 RbkR

Halobacterium sp. NRC-1
1 RbkR

Haloferax volcanii DS2
1 RbkR

Halomicrobium mukohataei DSM 12286
1 RbkR

Haloquadratum walsbyi DSM 16790
1 RbkR

Halorubrum lacusprofundi ATCC 49239
1 RbkR

Haloterrigena turkmenica DSM 5511
1 RbkR

Natrialba magadii ATCC 43099
1 RbkR

Natronomonas pharaonis DSM 2160
Riboflavin biosynthesis
TF ThiR
4 ThiR

Haloarcula marismortui ATCC 43049
2 ThiR

Halobacterium salinarum R1
2 ThiR

Halobacterium sp. NRC-1
2 ThiR

Haloferax volcanii DS2
2 ThiR

Halomicrobium mukohataei DSM 12286
2 ThiR

Haloquadratum walsbyi DSM 16790
3 ThiR

Halorhabdus utahensis DSM 12940
1 ThiR

Halorubrum lacusprofundi ATCC 49239
2 ThiR

Haloterrigena turkmenica DSM 5511
3 ThiR

Natrialba magadii ATCC 43099
3 ThiR

Natronomonas pharaonis DSM 2160
Thiamine transport; Thiamine biosynthesis