Regulog ThiR - Halobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | repressor |
| Biological process: | Thiamine transport; Thiamine biosynthesis |
| Effector: | Thiamine phosphate |
| Phylum: | Euryarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ThiR
- By taxonomy - Halobacteriales
- By TF family - [Other]
- By effector - Thiamine phosphate
- By pathway - Thiamine transport
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Haloarcula marismortui ATCC 43049 | 6 | 4 |
| Halobacterium salinarum R1 | 3 | 2 |
| Halobacterium sp. NRC-1 | 3 | 2 |
| Haloferax volcanii DS2 | 2 | 2 |
| Halomicrobium mukohataei DSM 12286 | 2 | 2 |
| Haloquadratum walsbyi DSM 16790 | 3 | 2 |
| Halorhabdus utahensis DSM 12940 | 5 | 3 |
| Halorubrum lacusprofundi ATCC 49239 | 1 | 1 |
| Haloterrigena turkmenica DSM 5511 | 2 | 2 |
| Natrialba magadii ATCC 43099 | 3 | 3 |
| Natronomonas pharaonis DSM 2160 | 4 | 3 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| thi4 |
*
Haloarcula marismortui ATCC 43049 Site: position = 2 score = 4.67383 sequence = GTACCACCAAGAGATAT Gene: rrnAC1782: Thiazole biosynthetic enzyme Thi4 |
*
Halobacterium salinarum R1 Site: position = -28 score = 4.22469 sequence = TAATTATCTAGTTGTAC Site: position = -15 score = 4.6386 sequence = GTACCATGTAGTGGTAT Gene: OE4651F: Thiazole biosynthetic enzyme Thi4 |
*
Halobacterium sp. NRC-1 Site: position = -28 score = 4.22469 sequence = TAATTATCTAGTTGTAC Site: position = -15 score = 4.6386 sequence = GTACCATGTAGTGGTAT Gene: VNG2604Gm: Thiazole biosynthetic enzyme Thi4 |
*
Haloferax volcanii DS2 Site: position = -28 score = 5.0469 sequence = TTACTACTAGGTAGTAT Site: position = -15 score = 5.28335 sequence = GTATCACTAAGTAGTAT Gene: HVO_0665: Thiazole biosynthetic enzyme Thi4 |
*
Halomicrobium mukohataei DSM 12286 Site: position = -15 score = 5.29479 sequence = GTACCACTAGGTTGTAT Gene: Hmuk_0002: Thiazole biosynthetic enzyme Thi4 |
*
Haloquadratum walsbyi DSM 16790 Site: position = -15 score = 4.82031 sequence = ATAACACCAAGTAATAT Gene: HQ1276A: Thiazole biosynthetic enzyme Thi4 |
*
Halorhabdus utahensis DSM 12940 Site: position = -15 score = 5.37323 sequence = GTACCACTAAGTGGTAT Gene: Huta_2718: Thiazole biosynthetic enzyme Thi4 |
*
Halorubrum lacusprofundi ATCC 49239 Site: position = -28 score = 4.24518 sequence = GTACCACCGGGAGATAT Site: position = -15 score = 5.45364 sequence = ATATCACTAAGTGGTAT Gene: Hlac_2980: Thiazole biosynthetic enzyme Thi4 |
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Haloterrigena turkmenica DSM 5511 Site: position = -15 score = 5.0629 sequence = CTACCACCAAGTTGTAT Gene: Htur_1462: Thiazole biosynthetic enzyme Thi4 |
*
Natrialba magadii ATCC 43099 Site: position = -15 score = 5.39728 sequence = ATACCACCTAGTTGTAT Gene: Nmag_2419: Thiazole biosynthetic enzyme Thi4 |
*
Natronomonas pharaonis DSM 2160 Site: position = -15 score = 5.10342 sequence = ATATAACTGAGTTGTAT Gene: NP5174A: Thiazole biosynthetic enzyme Thi4 |
Thiazole biosynthetic enzyme Thi4 |
| thiDN |
|
Gene: OE4654F: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
Gene: VNG2606G: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate synthase ThiN (EC 2.5.1.3) |
| CRON 2. | ||||||||||||
| thiC |
*
Haloarcula marismortui ATCC 43049 Site: position = -29 score = 5.09262 sequence = TTATAACTTGGTAGTAT Site: position = -16 score = 4.56026 sequence = GTATAACCTAGTGATTA Gene: rrnAC1182: Thiamin biosynthesis protein ThiC |
*
Halobacterium salinarum R1 Site: position = -30 score = 4.80278 sequence = TTATTATCTAGTGGTAT Site: position = -17 score = 4.45129 sequence = GTATCACTAAGTAATTG Gene: OE2057F: Thiamin biosynthesis protein ThiC |
*
Halobacterium sp. NRC-1 Site: position = -30 score = 4.80278 sequence = TTATTATCTAGTGGTAT Site: position = -17 score = 4.45129 sequence = GTATCACTAAGTAATTG Gene: VNG0715G: Thiamin biosynthesis protein ThiC |
*
Haloferax volcanii DS2 Site: position = -30 score = 4.53047 sequence = TTATTAACTAGTTGTAT Gene: HVO_2154: Thiamin biosynthesis protein ThiC |
*
Halomicrobium mukohataei DSM 12286 Site: position = -30 score = 4.8485 sequence = TTATAATCTAGTGATAT Site: position = -17 score = 4.31537 sequence = ATATAACTAGCTTATCT Gene: Hmuk_2297: Thiamin biosynthesis protein ThiC |
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Halorhabdus utahensis DSM 12940 Site: position = -43 score = 5.25063 sequence = GTATCACTAGGTTATAT Site: position = -30 score = 4.91507 sequence = ATATAATCTAGTAGTAC Gene: Huta_2472: Thiamin biosynthesis protein ThiC |
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Haloterrigena turkmenica DSM 5511 Site: position = -17 score = 4.45043 sequence = ATACAACCTAGTTATCG Site: position = -30 score = 4.61058 sequence = ATATAACTCGATGATAC Gene: Htur_1332: Thiamin biosynthesis protein ThiC |
*
Natrialba magadii ATCC 43099 Site: position = -17 score = 4.68232 sequence = ATACAACCTAGTTATCC Site: position = -30 score = 4.67821 sequence = TTATAATCTAGTAATAC Gene: Nmag_2593: Thiamin biosynthesis protein ThiC |
*
Natronomonas pharaonis DSM 2160 Site: position = -17 score = 4.10509 sequence = GTATTACTAGATTGTTG Site: position = -30 score = 4.56683 sequence = TTATTAGCTGGTTGTAT Gene: NP2210A: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| CRON 3. | ||||||||||||
| tenA1 |
*
Haloarcula marismortui ATCC 43049 Site: position = -59 score = 5.39728 sequence = ATACAACCAAGTTGTAT Gene: rrnAC1765: Thiaminase II (EC 3.5.99.2) |
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Gene: HVO_B0381: Thiaminase II (EC 3.5.99.2) |
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Haloquadratum walsbyi DSM 16790 Site: position = -61 score = 4.83599 sequence = GTATTAGTTAGTTGTAT Gene: HQ2369A: Thiaminase II (EC 3.5.99.2) |
*
Halorhabdus utahensis DSM 12940 Site: position = -55 score = 4.91507 sequence = GTATAATTTGGTAGTAT Site: position = -42 score = 4.24892 sequence = GTATTAGTGAGTTATAA Gene: Huta_0684: Thiaminase II (EC 3.5.99.2) |
Gene: Hlac_2987: Thiaminase II (EC 3.5.99.2) |
Gene: Htur_2707: Thiaminase II (EC 3.5.99.2) |
*
Natrialba magadii ATCC 43099 Site: position = -55 score = 4.10061 sequence = GTATAAGCAGATTATAG Site: position = -42 score = 4.44075 sequence = ATAGCACTAGCTTATAT Gene: Nmag_0869: Thiaminase II (EC 3.5.99.2) |
*
Natronomonas pharaonis DSM 2160 Site: position = -41 score = 4.24518 sequence = GTACCACCCGGATATAT Gene: NP4082A: Thiaminase II (EC 3.5.99.2) |
Thiaminase II (EC 3.5.99.2) |
| tenA2 |
Gene: rrnAC1767: Thiaminase II (EC 3.5.99.2) |
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Gene: HVO_B0380: Thiaminase II (EC 3.5.99.2) |
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Gene: Huta_0685: Thiaminase II (EC 3.5.99.2) |
Gene: Hlac_2986: Thiaminase II (EC 3.5.99.2) |
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Gene: NP4080A: Thiaminase II (EC 3.5.99.2) |
Thiaminase II (EC 3.5.99.2) |
| thiV |
Gene: rrnAC1769: Predicted thiamin transporter ThiV, SSS family |
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Gene: HVO_B0379: Predicted thiamin transporter ThiV, SSS family |
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Gene: HQ2370A: Predicted thiamin transporter ThiV, SSS family |
Gene: Huta_0686: Predicted thiamin transporter ThiV, SSS family |
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Predicted thiamin transporter ThiV, SSS family |
| CRON 4. | ||||||||||||
| thiR2 |
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Haloarcula marismortui ATCC 43049 Site: position = -77 score = 5.39728 sequence = ATACAACTTGGTTGTAT Gene: rrnAC1764: Predicted thiamin repressor ThiR, Xre family |
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Gene: Hmuk_1352: Predicted thiamin repressor ThiR, Xre family |
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Gene: Huta_2411: Predicted thiamin repressor ThiR, Xre family |
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Gene: Htur_2542: Predicted thiamin repressor ThiR, Xre family |
Gene: Nmag_0434: Predicted thiamin repressor ThiR, Xre family |
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Predicted thiamin repressor ThiR, Xre family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |