Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Collection of regulogs in Campylobacteraceae taxonomic group

General statistics
Genomes 9
TF regulogs 0
TF regulons 0
TF binding sites 0
RNA regulogs 2
RNA regulons 4
RNA sites 5

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Campylobacter coli RM2228 0 0 1 1 1 1
Campylobacter concisus 13826 0 0 0 0 0 0
Campylobacter curvus 525.92 0 0 0 0 0 0
Campylobacter fetus subsp. fetus 82-40 0 0 0 0 0 0
Campylobacter hominis ATCC BAA-381 0 0 0 0 0 0
Campylobacter jejuni subsp. jejuni NCTC 11168 0 0 1 1 1 1
Campylobacter lari RM2100 0 0 1 2 1 2
Campylobacter rectus RM3267 0 0 0 0 0 0
Campylobacter upsaliensis RM3195 0 0 1 1 1 1
Genomic distribution of regulons
Family Type Regulator Function
RF00059 RNA TPP
1 TPP

Campylobacter jejuni subsp. jejuni NCTC 11168
2 TPP

Campylobacter lari RM2100
1 TPP

Campylobacter coli RM2228
1 TPP

Campylobacter upsaliensis RM3195
Riboflavin biosynthesis
RF01055 RNA MOCO_RNA_motif