Collection of regulogs in Campylobacteraceae taxonomic group
Genomes | 9 |
TF regulogs | 0 |
TF regulons | 0 |
TF binding sites | 0 |
RNA regulogs | 2 |
RNA regulons | 4 |
RNA sites | 5 |
This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.
TF | RNA | Total | ||||
---|---|---|---|---|---|---|
Genomes | Regulons | Sites | Regulons | Sites | Regulons | Sites |
Campylobacter coli RM2228 | 0 | 0 | 1 | 1 | 1 | 1 |
Campylobacter concisus 13826 | 0 | 0 | 0 | 0 | 0 | 0 |
Campylobacter curvus 525.92 | 0 | 0 | 0 | 0 | 0 | 0 |
Campylobacter fetus subsp. fetus 82-40 | 0 | 0 | 0 | 0 | 0 | 0 |
Campylobacter hominis ATCC BAA-381 | 0 | 0 | 0 | 0 | 0 | 0 |
Campylobacter jejuni subsp. jejuni NCTC 11168 | 0 | 0 | 1 | 1 | 1 | 1 |
Campylobacter lari RM2100 | 0 | 0 | 1 | 2 | 1 | 2 |
Campylobacter rectus RM3267 | 0 | 0 | 0 | 0 | 0 | 0 |
Campylobacter upsaliensis RM3195 | 0 | 0 | 1 | 1 | 1 | 1 |