Regulog TPP - Campylobacteraceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Epsilon |
Member of regulog collections
- By taxonomy - Campylobacteraceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Campylobacter lari RM2100 | 5 | 2 |
| Campylobacter coli RM2228 | 1 | 1 |
| Campylobacter rectus RM3267 | ||
| Campylobacter concisus 13826 | ||
| Campylobacter hominis ATCC BAA-381 | ||
| Campylobacter upsaliensis RM3195 | 1 | 1 |
| Campylobacter jejuni subsp. jejuni NCTC 11168 | 1 | 1 |
| Campylobacter curvus 525.92 | ||
| Campylobacter fetus subsp. fetus 82-40 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| thiD |
*
Campylobacter lari RM2100 Site: position = -118 score = 22.4 sequence = TTTTAGCCAATGGGG... Gene: Cla_1124: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CCO1156: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CAMRE0001_1779: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CCC13826_0361: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CHAB381_1498: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CUP0764: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Cj1082c: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
|
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiM |
Gene: Cla_1123: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
|
|
|
|
|
|
|
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
Gene: Cla_1122: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: CCO1155: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
|
|
Gene: CUP0765: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Cj1081c: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
|
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| hemD |
Gene: Cla_1121: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CCO1154: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CAMRE0001_1487: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CCC13826_0493: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CHAB381_1483: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CUP0766: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: Cj1080c: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CCV52592_0948: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CFF8240_1262: Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Uroporphyrinogen-III synthase (EC 4.2.1.75) |
| CRON 2. | ||||||||||
| thiC |
*
Campylobacter lari RM2100 Site: position = -155 score = 53.71 sequence = TTGCATAAATGACGG... Gene: Cla_1025: Thiamine biosynthesis protein ThiC |
*
Campylobacter coli RM2228 Site: position = -150 score = 54.75 sequence = AAACATAAATGACGG... Gene: CCO0544: Thiamine biosynthesis protein ThiC |
Gene: CAMRE0001_1204: Thiamine biosynthesis protein ThiC |
Gene: CCC13826_1468: Thiamine biosynthesis protein ThiC |
Gene: CHAB381_0672: Thiamine biosynthesis protein ThiC |
*
Campylobacter upsaliensis RM3195 Site: position = -146 score = 55.06 sequence = ACATAAATGACGGGA... Gene: CUP0321: Thiamine biosynthesis protein ThiC |
*
Campylobacter jejuni subsp. jejuni NCTC 11168 Site: position = -160 score = 61.07 sequence = ACATAAATGACGGGA... Gene: Cj0453: Thiamine biosynthesis protein ThiC |
|
Gene: CFF8240_0410: Thiamine biosynthesis protein ThiC |
Thiamine biosynthesis protein ThiC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |