Collection of regulogs in Sulfolobales taxonomic group
| Genomes | 5 |
| TF regulogs | 3 |
| TF regulons | 15 |
| TF binding sites | 53 |
| RNA regulogs | 0 |
| RNA regulons | 0 |
| RNA sites | 0 |
This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.
| TF | RNA | Total | ||||
|---|---|---|---|---|---|---|
| Genomes | Regulons | Sites | Regulons | Sites | Regulons | Sites |
| Metallosphaera sedula DSM 5348 | 3 | 11 | 0 | 0 | 3 | 11 |
| Sulfolobus acidocaldarius DSM 639 | 3 | 10 | 0 | 0 | 3 | 10 |
| Sulfolobus islandicus Y.N.15.51 | 3 | 9 | 0 | 0 | 3 | 9 |
| Sulfolobus solfataricus P2 | 3 | 9 | 0 | 0 | 3 | 9 |
| Sulfolobus tokodaii str. 7 | 3 | 14 | 0 | 0 | 3 | 14 |
| Family | Type | Regulator | Function | |||||
|---|---|---|---|---|---|---|---|---|
| [Other] | TF |
|