Regulog RbkR - Sulfolobales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Crenarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sulfolobales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Metallosphaera sedula DSM 5348 | 6 | 2 |
| Sulfolobus acidocaldarius DSM 639 | 6 | 2 |
| Sulfolobus islandicus Y.N.15.51 | 6 | 2 |
| Sulfolobus solfataricus P2 | 6 | 2 |
| Sulfolobus tokodaii str. 7 | 5 | 2 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| ribB |
*
Metallosphaera sedula DSM 5348 Site: position = -42 score = 5.1669 sequence = ATTAGTATATACGCTT Gene: Msed_0046: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -45 score = 4.3733 sequence = GATAGTACATACGCTT Gene: Saci_0822: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Sulfolobus islandicus Y.N.15.51 Site: position = -46 score = 5.14522 sequence = ATGAGTAAATACTTTT Gene: YN1551_1109: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Sulfolobus solfataricus P2 Site: position = -46 score = 5.14522 sequence = ATGAGTAAATACTTTT Gene: SSO0402: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Sulfolobus tokodaii str. 7 Site: position = -43 score = 4.88697 sequence = ATTAGTACATACGCTT Gene: ST0392: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
| ribE |
Gene: Msed_0047: Riboflavin synthase archaeal (EC 2.5.1.9) |
Gene: Saci_0821: Riboflavin synthase archaeal (EC 2.5.1.9) |
Gene: YN1551_1108: Riboflavin synthase archaeal (EC 2.5.1.9) |
Gene: SSO0401: Riboflavin synthase archaeal (EC 2.5.1.9) |
Gene: ST0393: Riboflavin synthase archaeal (EC 2.5.1.9) |
Riboflavin synthase archaeal (EC 2.5.1.9) |
| ribH |
Gene: Msed_0048: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Saci_0820: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: YN1551_1107: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: SSO0400: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: ST0394: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| arfA |
Gene: Msed_0049: GTP cyclohydrolase III (EC 3.5.4.29) |
Gene: Saci_0819: GTP cyclohydrolase III (EC 3.5.4.29) |
Gene: YN1551_1106: GTP cyclohydrolase III (EC 3.5.4.29) |
Gene: SSO0399: GTP cyclohydrolase III (EC 3.5.4.29) |
Gene: ST0395: GTP cyclohydrolase III (EC 3.5.4.29) |
GTP cyclohydrolase III (EC 3.5.4.29) |
| pyrD |
Gene: Msed_0050: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
Gene: Saci_0818: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
Gene: YN1551_1105: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
Gene: SSO0398: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
Gene: ST0396: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
Pyrimidine deaminase archaeal predicted (EC 3.5.4.26) |
| CRON 2. | ||||||
| ribT |
*
Metallosphaera sedula DSM 5348 Site: position = -47 score = 4.29385 sequence = AGGAGTAGATACTAAA Site: position = -20 score = 4.74622 sequence = TTTGGTATTTACCAAT Gene: Msed_0426: Predicted riboflavin transporter ribT |
*
Sulfolobus acidocaldarius DSM 639 Site: position = -20 score = 5.56985 sequence = ATGAGTATTTACTAAT Gene: Saci_1045: Predicted riboflavin transporter ribT |
*
Sulfolobus islandicus Y.N.15.51 Site: position = -59 score = 5.21432 sequence = CTTGGTATATACTAAT Gene: YN1551_0996: Predicted riboflavin transporter ribT |
*
Sulfolobus solfataricus P2 Site: position = -59 score = 5.21432 sequence = CTTGGTATATACTAAT Gene: SSO0290: Predicted riboflavin transporter ribT |
*
Sulfolobus tokodaii str. 7 Site: position = -120 score = 4.67711 sequence = ATGAGTAATTAATATT Site: position = -19 score = 4.3247 sequence = TCGAGTATTTACTTAT Gene: ST0691: Predicted riboflavin transporter ribT |
Predicted riboflavin transporter ribT |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |