Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog RbkR - Sulfolobales

Properties
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Crenarchaeota
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Metallosphaera sedula DSM 5348 6 2
Sulfolobus acidocaldarius DSM 639 6 2
Sulfolobus islandicus Y.N.15.51 6 2
Sulfolobus solfataricus P2 6 2
Sulfolobus tokodaii str. 7 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribB
*
Metallosphaera sedula DSM 5348

Site:
position = -42
score = 5.1669
sequence = ATTAGTATATACGCTT

Gene: Msed_0046: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Sulfolobus acidocaldarius DSM 639

Site:
position = -45
score = 4.3733
sequence = GATAGTACATACGCTT

Gene: Saci_0822: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Sulfolobus islandicus Y.N.15.51

Site:
position = -46
score = 5.14522
sequence = ATGAGTAAATACTTTT

Gene: YN1551_1109: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Sulfolobus solfataricus P2

Site:
position = -46
score = 5.14522
sequence = ATGAGTAAATACTTTT

Gene: SSO0402: 3,4-dihydroxy-2-butanone 4-phosphate synthase
*
Sulfolobus tokodaii str. 7

Site:
position = -43
score = 4.88697
sequence = ATTAGTACATACGCTT

Gene: ST0392: 3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
ribE
 
Metallosphaera sedula DSM 5348

Gene: Msed_0047: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Sulfolobus acidocaldarius DSM 639

Gene: Saci_0821: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Sulfolobus islandicus Y.N.15.51

Gene: YN1551_1108: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Sulfolobus solfataricus P2

Gene: SSO0401: Riboflavin synthase archaeal (EC 2.5.1.9)
 
Sulfolobus tokodaii str. 7

Gene: ST0393: Riboflavin synthase archaeal (EC 2.5.1.9)
Riboflavin synthase archaeal (EC 2.5.1.9)
ribH
 
Metallosphaera sedula DSM 5348

Gene: Msed_0048: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Sulfolobus acidocaldarius DSM 639

Gene: Saci_0820: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Sulfolobus islandicus Y.N.15.51

Gene: YN1551_1107: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Sulfolobus solfataricus P2

Gene: SSO0400: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Sulfolobus tokodaii str. 7

Gene: ST0394: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
arfA
 
Metallosphaera sedula DSM 5348

Gene: Msed_0049: GTP cyclohydrolase III (EC 3.5.4.29)
 
Sulfolobus acidocaldarius DSM 639

Gene: Saci_0819: GTP cyclohydrolase III (EC 3.5.4.29)
 
Sulfolobus islandicus Y.N.15.51

Gene: YN1551_1106: GTP cyclohydrolase III (EC 3.5.4.29)
 
Sulfolobus solfataricus P2

Gene: SSO0399: GTP cyclohydrolase III (EC 3.5.4.29)
 
Sulfolobus tokodaii str. 7

Gene: ST0395: GTP cyclohydrolase III (EC 3.5.4.29)
GTP cyclohydrolase III (EC 3.5.4.29)
pyrD
 
Metallosphaera sedula DSM 5348

Gene: Msed_0050: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
Sulfolobus acidocaldarius DSM 639

Gene: Saci_0818: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
Sulfolobus islandicus Y.N.15.51

Gene: YN1551_1105: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
Sulfolobus solfataricus P2

Gene: SSO0398: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
Sulfolobus tokodaii str. 7

Gene: ST0396: Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
Pyrimidine deaminase archaeal predicted (EC 3.5.4.26)
 
CRON 2.
ribT
*
Metallosphaera sedula DSM 5348

Site:
position = -47
score = 4.29385
sequence = AGGAGTAGATACTAAA

Site:
position = -20
score = 4.74622
sequence = TTTGGTATTTACCAAT

Gene: Msed_0426: Predicted riboflavin transporter ribT
*
Sulfolobus acidocaldarius DSM 639

Site:
position = -20
score = 5.56985
sequence = ATGAGTATTTACTAAT

Gene: Saci_1045: Predicted riboflavin transporter ribT
*
Sulfolobus islandicus Y.N.15.51

Site:
position = -59
score = 5.21432
sequence = CTTGGTATATACTAAT

Gene: YN1551_0996: Predicted riboflavin transporter ribT
*
Sulfolobus solfataricus P2

Site:
position = -59
score = 5.21432
sequence = CTTGGTATATACTAAT

Gene: SSO0290: Predicted riboflavin transporter ribT
*
Sulfolobus tokodaii str. 7

Site:
position = -120
score = 4.67711
sequence = ATGAGTAATTAATATT

Site:
position = -19
score = 4.3247
sequence = TCGAGTATTTACTTAT

Gene: ST0691: Predicted riboflavin transporter ribT
Predicted riboflavin transporter ribT
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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