Propagation of Crp regulog to Shewanella oneidensis MR-1
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella oneidensis MR-1 |
| Orthologous TF(s) | SO0624 |
| Regulated genes | 209 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -210
Score: 4.1 Sequence: CTTTGTGCAGTGTATCACAAAG
Locus tag: SO0021
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| SO0021 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0021 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0013 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella sp W3-18-1 | Sputw3181_0013 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella sp ANA-3 | Shewana3_0024 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella sp MR-4 | Shewmr4_0018 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella sp MR-7 | Shewmr7_0016 | -210 | 4.1 | CTTTGTGCAGTGTATCACAAAG |
| Shewanella baltica OS155 | Sbal_0021 | -210 | 3.7 | CTCTGTGCAGTGTATCACAAAG |
| Shewanella amazonensis SB2B | Sama_0032 | -193 | 3.8 | TGCTGTGCAGTGTATCACAAAG |
| Shewanella pealeana ATCC 700345 | Spea_0018 | -134 | 4.6 | TTTTGTGATTCGTCGCACACTG |
| Shewanella halifaxensis HAW-EB4 | Shal_0016 | -134 | 4.4 | TTTTGTGATTAGTCGCACACTG |
| Shewanella piezotolerans WP3 | swp_0035 | -127 | 4.4 | TTATGTGATTAGTCGCACACTG |
|
Position: -237
Score: 4.4 Sequence: CTTTGTGATACACTGCACAAAG
Locus tag: SO0022
|
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| SO0022 | -237 | 4.4 | CTTTGTGATACACTGCACAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) | ||||
| Shewanella oneidensis MR-1 | SO0022 | -237 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_0014 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp W3-18-1 | Sputw3181_0014 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella sp ANA-3 | Shewana3_0025 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-4 | Shewmr4_0019 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella sp MR-7 | Shewmr7_0017 | -255 | 4.4 | CTTTGTGATACACTGCACAAAG |
| Shewanella baltica OS155 | Sbal_0022 | -302 | 4.2 | CTTTGTGATACACTGCACAGAG |
| Shewanella amazonensis SB2B | Sama_0033 | -109 | 4 | CTTTGTGATACACTGCACAGCA |
| Shewanella pealeana ATCC 700345 | Spea_0019 | -252 | 4.1 | CAGTGTGCGACGAATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0017 | -250 | 4 | CAGTGTGCGACTAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0024 | -48 | 3.8 | TTTTCTGATAGATTTTACATCA |
|
Position: -151
Score: 4.1 Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: SO0096
|
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| SO0096 | -151 | 4.1 | TTATGTGAGCTAGCTTGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutC | ||||
| Ortholog function: histidine utilization repressor | ||||
| Shewanella oneidensis MR-1 | SO0096 | -151 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0078 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp W3-18-1 | Sputw3181_3999 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp ANA-3 | Shewana3_0099 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella sp MR-4 | Shewmr4_0098 | -142 | 4.1 | TTATGTGAGCCAGCTTGTATTT |
| Shewanella sp MR-7 | Shewmr7_0093 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella baltica OS155 | Sbal_4253 | -177 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella loihica PV-4 | Shew_3758 | -138 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella pealeana ATCC 700345 | Spea_4170 | -106 | 3.8 | ATTTGTGAGCTAGCTTGTGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0072 | -106 | 3.9 | ATTTGTGAGCCCGCTTGTATTT |
| Shewanella piezotolerans WP3 | swp_0132 | -177 | 4.2 | ATTTGTGAGCTAGCTTGTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4448 | -150 | 4.1 | AGTTGTGATCCAACTTGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4839 | -201 | 4.1 | AAGTGTGATCCAACTTGTATTT |
|
Position: -161
Score: 4.1 Sequence: TTTCGTGAGCTAGATTAGATAT
Locus tag: SO0141
|
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| SO0141 | -161 | 4.1 | TTTCGTGAGCTAGATTAGATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0141 | ||||
| Ortholog function: sensory box/GGDEF family protein | ||||
| Shewanella oneidensis MR-1 | SO0141 | -161 | 4.1 | TTTCGTGAGCTAGATTAGATAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0133 | -174 | 4.2 | TTTCGTGACCTAGATTAGATAT |
| Shewanella sp W3-18-1 | Sputw3181_3939 | -174 | 4.2 | TTTCGTGACCTAGATTAGATAT |
| Shewanella sp ANA-3 | Shewana3_0133 | -163 | 4.1 | TTTCGTGAGCTAGATTAGATAT |
| Shewanella sp MR-4 | Shewmr4_0134 | -161 | 4.1 | TTTCGTGAGCTAGATTAGATAT |
| Shewanella sp MR-7 | Shewmr7_0128 | -161 | 4.1 | TTTCGTGAGCTAGATTAGATAT |
| Shewanella baltica OS155 | Sbal_4220 | -160 | 4.2 | TTTCGTGACCTAGATTAGATAT |
| Shewanella baltica OS155 | Sbal_4221 | -160 | 4.2 | TTTCGTGACCTAGATTAGATAT |
| Shewanella amazonensis SB2B | Sama_0142 | -137 | 4.6 | TTTTGTGATGTGGATTAGAAAT |
| Shewanella loihica PV-4 | Shew_0041 | -55 | 4 | TTTCGTGACCTAGATTAGACTT |
| Shewanella piezotolerans WP3 | swp_0168 | -156 | 4 | ATTCGTGACCTAGATTAGACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4373 | -198 | 3.7 | ATCATTGATAAATATAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4765 | -240 | 4 | AATCGTGACTTAGATTAGACTT |
|
Position: -150
Score: 3.8 Sequence: CTCAATGATCCAGCTCACACTT
Locus tag: SO0162
|
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| SO0162 | -150 | 3.8 | CTCAATGATCCAGCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pckA | ||||
| Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | ||||
| Shewanella oneidensis MR-1 | SO0162 | -150 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3571 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_3708 | -151 | 4 | CACCATGATCCAGTTCACACTT |
| Shewanella sp ANA-3 | Shewana3_0147 | -151 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-4 | Shewmr4_0152 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella sp MR-7 | Shewmr7_0147 | -149 | 3.8 | CTCAATGATCCAGCTCACACTT |
| Shewanella amazonensis SB2B | Sama_0165 | -145 | 4.1 | TTTTCAGATCCGGCTCACACAT |
| Shewanella loihica PV-4 | Shew_3623 | -128 | 4.6 | TTTCGCGATCTTCCTCACACAT |
| Shewanella pealeana ATCC 700345 | Spea_0140 | -112 | 4.9 | TTTTTTGATCTAGTACACATAT |
| Shewanella halifaxensis HAW-EB4 | Shal_4178 | -112 | 4.8 | TTTTTTGATCTTGCCCACATAT |
| Shewanella piezotolerans WP3 | swp_0182 | -113 | 4.9 | TTTTTTGATCTAGTCCACATAT |
| Shewanella sediminis HAW-EB3 | Ssed_4362 | -142 | 4.1 | AAACACGATCTTCCTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_4740 | -100 | 3.8 | AATCGTGACATAGCGCAAAGAC |
|
Position: -222
Score: 4.2 Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: SO0263
|
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| SO0263 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Shewanella oneidensis MR-1 | SO0263 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3727 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp W3-18-1 | Sputw3181_0188 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp ANA-3 | Shewana3_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-4 | Shewmr4_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-7 | Shewmr7_0226 | -222 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella baltica OS155 | Sbal_0228 | -212 | 4.4 | TTTTGTGATTAGAATCTCAACA |
| Shewanella denitrificans OS217 | Sden_3569 | -186 | 4 | TTTTGTGATAAGCCTCCCAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0179 | -213 | 4.2 | TTTTGTGATAACAATCTCAGCT |
| Shewanella amazonensis SB2B | Sama_0245 | -207 | 3.8 | TTTTGTGAGTTCCCTCCCAGCT |
| Shewanella loihica PV-4 | Shew_0190 | -223 | 4.8 | TTTTGTGATTAATATCAGAATT |
| Shewanella pealeana ATCC 700345 | Spea_0215 | -212 | 4.1 | TTTTGTGATATTAATCTCGCCA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4104 | -212 | 3.9 | TTTTGTGACATAAACCGTACTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella piezotolerans WP3 | swp_2043 | -212 | 5 | ATTTGTGATTTAAATCGCGTTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4287 | -223 | 4.5 | TTTTGTGATTTCAATCAAAGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4659 | -224 | 4.2 | TTTTATGACTTTAATCAAAGTA |
|
Position: -234
Score: 4 Sequence: CAATTTGATATGGTTCCAATAA
Position: -125
Score: 4.1 Sequence: TGCTGAGATTCTAATCACAAAA
Locus tag: SO0264
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| SO0264 | -234 | 4 | CAATTTGATATGGTTCCAATAA | |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scyA | ||||
| Ortholog function: cytochrome c-type protein | ||||
| Shewanella oneidensis MR-1 | SO0264 | -234 | 4 | CAATTTGATATGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3726 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_0189 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp ANA-3 | Shewana3_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0227 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella baltica OS155 | Sbal_0229 | -228 | 3.9 | CAATATGATGTGGTTCCAATAA |
| -128 | 4.5 | TGTTGAGATTCTAATCACAAAA | ||
| Shewanella denitrificans OS217 | Sden_3568 | -131 | 3.8 | AGCTGGGAGGCTTATCACAAAA |
| -109 | 4.1 | AGGTGTGATTTTATTAACTTTA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0180 | -233 | 3.9 | CAATTTGATATGGTTCCAAAAT |
| -133 | 4.1 | AGCTGAGATTGTTATCACAAAA | ||
| Shewanella amazonensis SB2B | Sama_0246 | -225 | 4 | CAATTTGATGCAGTTCCAATAA |
| Shewanella loihica PV-4 | Shew_0191 | -242 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -131 | 4.8 | AATTCTGATATTAATCACAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_0216 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -130 | 4 | TGGCGAGATTAATATCACAAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4103 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| Shewanella piezotolerans WP3 | swp_2044 | -231 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -131 | 4.8 | TAACGCGATTTAAATCACAAAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4286 | -145 | 4.4 | AGCTTTGATTGAAATCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4658 | -256 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -144 | 3.9 | TACTTTGATTAAAGTCATAAAA | ||
|
Position: -97
Score: 4.1 Sequence: TTTTGTGCGCACCTTCATAAAT
Locus tag: SO0324
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| SO0324 | -97 | 4.1 | TTTTGTGCGCACCTTCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbA | ||||
| Ortholog function: nitrosative stress induced protein | ||||
| Shewanella oneidensis MR-1 | SO0324 | -97 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3663 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3804 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp ANA-3 | Shewana3_3845 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-4 | Shewmr4_3649 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-7 | Shewmr7_0295 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella baltica OS155 | Sbal_4067 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0404 | -142 | 4 | TTTTGCGATCCCAACCTCAAAA |
| Shewanella amazonensis SB2B | Sama_3326 | -94 | 3.6 | TTTTGTGCGCATCTTCATGCTT |
| Shewanella loihica PV-4 | Shew_0259 | -96 | 4.1 | TTTTGTGCGCATCTTCATAATT |
| Shewanella pealeana ATCC 700345 | Spea_0303 | -96 | 3.9 | TTTTGTGCACATCTTCAAAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3986 | -96 | 4 | TTTTGTGCACATCTTCAAACTT |
| Shewanella piezotolerans WP3 | swp_2171 | -96 | 4 | TTTTGTGCGCACCTTCAAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4199 | -187 | 3.9 | TTTTGTGCACATCTTCATACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0395 | -82 | 3.4 | TTCTGTGCGCACCTTCATAGAT |
|
Position: -122
Score: 3.8 Sequence: AGGTGTGCTTTTTATGACATAT
Locus tag: SO0354
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| SO0354 | -122 | 3.8 | AGGTGTGCTTTTTATGACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0354 | ||||
| Ortholog function: inner membrane protein YrbG, predicted calcium/sodium:proton antiporter | ||||
| Shewanella oneidensis MR-1 | SO0354 | -84 | 4.4 | TTATTTGCGCTACATCACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3635 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3775 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella baltica OS155 | Sbal_0350 | -73 | 3.8 | CTATTTGCGCGGGCTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0360 | -51 | 4.3 | TTGTGTTACCTAGCACACATAT |
| Shewanella pealeana ATCC 700345 | Spea_3883 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0386 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0314 | -127 | 3.9 | AAAGTTGTCATAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0330 | -110 | 3.9 | GAATTTGTCATAGATCACATTT |
|
Position: -84
Score: 4.4 Sequence: TTATTTGCGCTACATCACAAAA
Locus tag: SO0355
|
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| SO0355 | -84 | 4.4 | TTATTTGCGCTACATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0355 | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO0355 | -84 | 4.4 | TTATTTGCGCTACATCACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3634 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3774 | -84 | 3.8 | CTATTTGCGCAGCATCACAAAA |
| -45 | 3.9 | TAAAGTGATGGGGTAAAAATAA | ||
| Shewanella baltica OS155 | Sbal_0351 | -73 | 3.8 | CTATTTGCGCGGGCTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0361 | -51 | 4.3 | TTGTGTTACCTAGCACACATAT |
| Shewanella pealeana ATCC 700345 | Spea_3882 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0387 | -124 | 4.3 | AAGTTTGTCTTAGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0315 | -127 | 3.9 | AAAGTTGTCATAGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0331 | -110 | 3.9 | GAATTTGTCATAGATCACATTT |
|
Position: -144
Score: 4 Sequence: TTTTGTGATCATCTTCTAAGAG
Locus tag: SO0396
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| SO0396 | -144 | 4 | TTTTGTGATCATCTTCTAAGAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC1 | ||||
| Ortholog function: Fumarate reductase cytochrome b subunit | ||||
| Shewanella oneidensis MR-1 | SO0396 | -144 | 4 | TTTTGTGATCATCTTCTAAGAG |
| -79 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3441 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0498 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp ANA-3 | Shewana3_0401 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-4 | Shewmr4_0402 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-7 | Shewmr7_3623 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -76 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella baltica OS155 | Sbal_3937 | -145 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -105 | 4.1 | TCAATTGATCTGGCTCACGTTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0456 | -135 | 3.8 | TTGTGTGACCCGCTTCTAACTC |
| -103 | 3.8 | ATAGGTGAACATTATCACGGTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0456 | -135 | 3.8 | TTGTGTGACCCGCTTCTAACTC |
| -103 | 3.8 | ATAGGTGAACATTATCACGGTT | ||
| Shewanella amazonensis SB2B | Sama_3222 | -144 | 4.1 | GTTTGTGATCCGCTTCCAATAA |
| Shewanella pealeana ATCC 700345 | Spea_0392 | -138 | 4.7 | ATTTGTGATCTTGATCTAATAG |
| -106 | 4 | AAGGGTGAGTTCCTTCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3899 | -138 | 3.9 | GTTTGTGATCTACGTCTAATAG |
| -106 | 4.2 | TGTAGTGACACTGATCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella piezotolerans WP3 | swp_0428 | -106 | 3.8 | TAGGGTGAGCAAAGTCACGATT |
| -94 | 3.9 | TTTGTTGATCTATCTCACTGTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4116 | -126 | 4.5 | GTTTGTGATCTGCTTCAAATAG |
| Shewanella woodyi ATCC 51908 | Swoo_0507 | -138 | 4.8 | GTTTGTGATGTGGTTCAAAAAA |
|
Position: -79
Score: 3.9 Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: SO0397
|
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| SO0397 | -79 | 3.9 | ATTTGTGAGCGATATTAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdrC | ||||
| Ortholog function: fumarate reductase cytochrome b subunit | ||||
| Shewanella oneidensis MR-1 | SO0397 | -79 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella oneidensis MR-1 | SO0397 | -144 | 4 | TTTTGTGATCATCTTCTAAGAG |
| -79 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -67 | 4.1 | ATTTGTGAGCGATATTAACTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0499 | -67 | 4.1 | ATTTGTGAGCGATATTAACTTT |
| Shewanella sp W3-18-1 | Sputw3181_0499 | -144 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -67 | 4.1 | ATTTGTGAGCGATATTAACTTT | ||
| Shewanella sp ANA-3 | Shewana3_0402 | -77 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp ANA-3 | Shewana3_0402 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-4 | Shewmr4_0403 | -77 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp MR-4 | Shewmr4_0403 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -77 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella sp MR-7 | Shewmr7_3622 | -76 | 3.9 | ATTTGTGAGCGATATTAATTTT |
| Shewanella sp MR-7 | Shewmr7_3622 | -144 | 4.2 | TTTTGTGATCCTCTTCTAAGAG |
| -76 | 3.9 | ATTTGTGAGCGATATTAATTTT | ||
| Shewanella baltica OS155 | Sbal_3936 | -105 | 4.1 | TCAATTGATCTGGCTCACGTTT |
| Shewanella baltica OS155 | Sbal_3936 | -145 | 4.3 | TTTTGTGATCTTCTTCTAAGAG |
| -105 | 4.1 | TCAATTGATCTGGCTCACGTTT | ||
| Shewanella amazonensis SB2B | Sama_3221 | -144 | 4.1 | GTTTGTGATCCGCTTCCAATAA |
| Shewanella loihica PV-4 | Shew_0333 | -98 | 4.4 | TGTTTTGATCTATCTCACGGTT |
| Shewanella loihica PV-4 | Shew_0333 | -98 | 4.4 | TGTTTTGATCTATCTCACGGTT |
| Shewanella pealeana ATCC 700345 | Spea_0393 | -138 | 4.7 | ATTTGTGATCTTGATCTAATAG |
| -106 | 4 | AAGGGTGAGTTCCTTCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0393 | -94 | 4.1 | TTTGTTGATCTATCTCACGGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -138 | 3.9 | GTTTGTGATCTACGTCTAATAG |
| -106 | 4.2 | TGTAGTGACACTGATCACGAAA | ||
| -94 | 4.1 | TTTGTTGATCTATCTCACGGTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -94 | 4.1 | TTTGTTGATCTATCTCACGGTT |
| Shewanella piezotolerans WP3 | swp_0429 | -106 | 3.8 | TAGGGTGAGCAAAGTCACGATT |
| -94 | 3.9 | TTTGTTGATCTATCTCACTGTT | ||
| Shewanella piezotolerans WP3 | swp_0429 | -94 | 3.9 | TTTGTTGATCTATCTCACTGTT |
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -104 | 4.4 | TGTTTTGATCTGCCTCACGGTT |
| -74 | 3.9 | ATATGTGAGCGACATTATGATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -104 | 4.4 | TGTTTTGATCTGCCTCACGGTT |
| -74 | 3.9 | ATATGTGAGCGACATTATGATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -109 | 4.7 | TGATTTGATCTGTCTCACAGTA |
| -79 | 4 | ATTTGTGAGCGACATTATCTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -109 | 4.7 | TGATTTGATCTGTCTCACAGTA |
| -79 | 4 | ATTTGTGAGCGACATTATCTAA | ||
|
Position: -113
Score: 4.7 Sequence: TATTGTGATCAGTATCAAACAC
Locus tag: SO0426
|
||||
| SO0426 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Shewanella oneidensis MR-1 | SO0426 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella putrefaciens CN-32 | Sputcn32_3415 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp W3-18-1 | Sputw3181_0528 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp ANA-3 | Shewana3_0428 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-4 | Shewmr4_0430 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-7 | Shewmr7_3597 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella baltica OS155 | Sbal_3911 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_3775 | -168 | 5.1 | TATTGTGATCGGTTTCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_0421 | -128 | 4.5 | GATTGTGATCAGCATCAAACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0478 | -130 | 4.6 | GATTGTGATCCGTATCAAACAA |
| Shewanella piezotolerans WP3 | swp_4749 | -113 | 4.5 | GATTGTGATCAGTATCAAACAA |
|
Position: -302
Score: 3.9 Sequence: AAGTATGAATCAGGTCACACTC
Position: -118
Score: 3.8 Sequence: TAACGAAATGCTTTTCACAGTA
Position: 27
Score: 3.8 Sequence: ATTTTTGATATGGATGGCGTTT
Locus tag: SO0431
|
||||
| SO0431 | -302 | 3.9 | AAGTATGAATCAGGTCACACTC | |
| -118 | 3.8 | TAACGAAATGCTTTTCACAGTA | ||
| 27 | 3.8 | ATTTTTGATATGGATGGCGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yniC | ||||
| Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC | ||||
| Shewanella oneidensis MR-1 | SO0431 | -302 | 3.9 | AAGTATGAATCAGGTCACACTC |
| -118 | 3.8 | TAACGAAATGCTTTTCACAGTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3410 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_0533 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp ANA-3 | Shewana3_0432 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-4 | Shewmr4_0436 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-7 | Shewmr7_3593 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella baltica OS155 | Sbal_3906 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella denitrificans OS217 | Sden_3378 | -316 | 4 | AAGTATGAATCGGCTCACACTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_3772 | -288 | 4.3 | AAGTATGAATCAGCTCACACTA |
| Shewanella amazonensis SB2B | Sama_0381 | -255 | 4 | AAGTATGAATCAGCTCACACTC |
| Shewanella loihica PV-4 | Shew_3425 | -295 | 4.1 | AAGTATGAATCAGATCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0424 | -286 | 4.3 | AAGTATGAATCCGATCACACTT |
| -178 | 4.1 | AAACTTGATCTAAATTATATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0481 | -286 | 4.5 | AAGTATGAATCCGATCACATTT |
| -178 | 3.7 | AACCTTGATCTAAATTATATAA | ||
| Shewanella piezotolerans WP3 | swp_4741 | -283 | 4.4 | AAGTATGAATCAGATCACACTT |
| -177 | 3.7 | AACACTGAGATTAATCACATAA | ||
| -101 | 3.7 | TTTCGTAAAGCTAAACACAATA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0437 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
| Shewanella woodyi ATCC 51908 | Swoo_0284 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
|
Position: -141
Score: 4.1 Sequence: GAGTGTGACCTGATTCATACTT
Locus tag: SO0432
|
||||
| SO0432 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Shewanella oneidensis MR-1 | SO0432 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3409 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp W3-18-1 | Sputw3181_0534 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp ANA-3 | Shewana3_0433 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-4 | Shewmr4_0437 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-7 | Shewmr7_3592 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella baltica OS155 | Sbal_3905 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella denitrificans OS217 | Sden_3377 | -139 | 4.1 | CAGTGTGAGCCGATTCATACTT |
| -67 | 3.9 | AATTGTTAGCCTTATCACTATG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3771 | -139 | 4.6 | TAGTGTGAGCTGATTCATACTT |
| Shewanella amazonensis SB2B | Sama_0382 | -138 | 4 | GAGTGTGAGCTGATTCATACTT |
| Shewanella loihica PV-4 | Shew_3424 | -140 | 4.3 | GAGTGTGATCTGATTCATACTT |
| Shewanella pealeana ATCC 700345 | Spea_0425 | -268 | 4 | TTATATAATTTAGATCAAGTTT |
| -160 | 4.8 | AAGTGTGATCGGATTCATACTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0482 | -247 | 3.7 | TTATATAATTTAGATCAAGGTT |
| -139 | 5 | AAATGTGATCGGATTCATACTT | ||
| Shewanella piezotolerans WP3 | swp_4740 | -245 | 3.9 | TTATGTGATTAATCTCAGTGTT |
| -139 | 4.9 | AAGTGTGATCTGATTCATACTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0438 | -141 | 4.4 | GAGTGTGATCTGATTCAAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0285 | -139 | 4.4 | GAGTGTGATCTGATTCAAACTT |
|
Position: -34
Score: 4.4 Sequence: ATACGTGATCTGACGCACATCA
Locus tag: SO0439
|
||||
| SO0439 | -34 | 4.4 | ATACGTGATCTGACGCACATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0439 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO0439 | -34 | 4.4 | ATACGTGATCTGACGCACATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3403 | -90 | 4.5 | AAATGTGAACCAGAGCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_0540 | -90 | 4.5 | AAATGTGAACCAGAGCACACTC |
| Shewanella sp ANA-3 | Shewana3_0438 | -78 | 4.2 | AAGCGTGAGCTAACGCACACAA |
| Shewanella sp MR-4 | Shewmr4_0442 | -77 | 3.8 | AAGCGTGAACTTAAGCACACTC |
| Shewanella sp MR-7 | Shewmr7_3587 | -77 | 3.8 | AAGCGTGAACTTAAGCACACTC |
| Shewanella baltica OS155 | Sbal_0417 | -93 | 4.8 | AAATGTGACCTAAAGCACATAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0491 | -135 | 5.2 | TTTTATGATTTAGATCACAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0430 | -137 | 4.8 | TTTTGTGATCTAAGTAGCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0486 | -138 | 4.7 | TTTTGTGACATAGGTAACACAA |
| Shewanella sediminis HAW-EB3 | Ssed_3193 | -105 | 4.3 | ATTTGTGACCAAGTTCCCAAAC |
| Shewanella woodyi ATCC 51908 | Swoo_0294 | -78 | 3.9 | AAACAGGACGTAGATCACACTT |
|
Position: -180
Score: 4.1 Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: SO0442
|
||||
| SO0442 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purH | ||||
| Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0442 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3401 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0542 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0441 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0445 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3584 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0420 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0493 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0395 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3412 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0432 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0488 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4724 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0444 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0296 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -130
Score: 4.3 Sequence: TAATGTGCTCTAGCGCAGATTT
Locus tag: SO0479
|
||||
| SO0479 | -130 | 4.3 | TAATGTGCTCTAGCGCAGATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mccA | ||||
| Ortholog function: cytochrome c, putative | ||||
| Shewanella oneidensis MR-1 | SO0479 | -130 | 4.3 | TAATGTGCTCTAGCGCAGATTT |
| -111 | 3.8 | TTTTTTGCTTTTTCTCTCATTC | ||
|
Position: -192
Score: 3.7 Sequence: CGTTATGCGCTAAATCACAAAA
Locus tag: SO0543
|
||||
| SO0543 | -192 | 3.7 | CGTTATGCGCTAAATCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0543 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO0543 | -192 | 3.7 | CGTTATGCGCTAAATCACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3331 | -88 | 4.2 | ATTTTTACTCTAATTCACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0610 | -88 | 4.2 | ATTTTTACTCTAATTCACAAAA |
| Shewanella sp ANA-3 | Shewana3_0541 | -193 | 4.1 | AGTTATGCGCTAAATCACAAAA |
| Shewanella sp MR-4 | Shewmr4_0542 | -192 | 4 | AGTTATGCGCTTAATCACAAAA |
| Shewanella sp MR-7 | Shewmr7_3488 | -191 | 4 | AGTTATGCGCTTAATCACAAAA |
| Shewanella baltica OS155 | Sbal_0501 | -201 | 4.8 | TGTTGTGCTCTCAATCACAAAA |
| -88 | 3.9 | AATTTTACCCTGATTCACAAAA | ||
| Shewanella denitrificans OS217 | Sden_0657 | -34 | 3.9 | TAATATGACTAGAGTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3534 | -200 | 4 | ATATTTGATCACAAGCACACTC |
| Shewanella amazonensis SB2B | Sama_3164 | -240 | 3.9 | CATTGTTACTCACTTCATACAT |
| -126 | 3.9 | ATTTATGACCATACTCACAGAG | ||
| Shewanella loihica PV-4 | Shew_0428 | -190 | 4.2 | TAGTGTTAACTCGATCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_3733 | -197 | 4.2 | TTTTGCTACATAGATCGCATAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3818 | -235 | 4.7 | TTTTGTTACATGGATCGCATAT |
| Shewanella piezotolerans WP3 | swp_0532 | -156 | 4.6 | TTTTGTTACACAGATCGCATAT |
| Shewanella sediminis HAW-EB3 | Ssed_0598 | -213 | 4.2 | TAATGTTAAATCGATCTCACTT |
| Shewanella woodyi ATCC 51908 | Swoo_4355 | -215 | 3.8 | AATTGCTAGATAGATCTCACTT |
|
Position: -141
Score: 4 Sequence: TTTTGTGATTTAGCGCATAACG
Locus tag: SO0544
|
||||
| SO0544 | -141 | 4 | TTTTGTGATTTAGCGCATAACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0544 | ||||
| Ortholog function: sensory box histidine kinase | ||||
| Shewanella oneidensis MR-1 | SO0544 | -141 | 4 | TTTTGTGATTTAGCGCATAACG |
| Shewanella putrefaciens CN-32 | Sputcn32_3330 | -242 | 4 | TTTTGTGAATTAGAGTAAAAAT |
| Shewanella sp W3-18-1 | Sputw3181_0611 | -242 | 4 | TTTTGTGAATTAGAGTAAAAAT |
| Shewanella sp ANA-3 | Shewana3_0542 | -144 | 4.3 | TTTTGTGATTTAGCGCATAACT |
| Shewanella sp MR-4 | Shewmr4_0543 | -146 | 4.1 | TTTTGTGATTAAGCGCATAACT |
| Shewanella sp MR-7 | Shewmr7_3487 | -145 | 4.1 | TTTTGTGATTAAGCGCATAACT |
|
Position: -102
Score: 4.4 Sequence: TATTTTGACTCAAGTCAAAATT
Locus tag: SO0572
|
||||
| SO0572 | -102 | 4.4 | TATTTTGACTCAAGTCAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0572 | ||||
| Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17) | ||||
| Shewanella oneidensis MR-1 | SO0572 | -102 | 4.4 | TATTTTGACTCAAGTCAAAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_3304 | -102 | 4.3 | TATTTTGACTAAGGTCAAAATT |
| Shewanella sp W3-18-1 | Sputw3181_0637 | -102 | 4.3 | TATTTTGACTAAGGTCAAAATT |
| Shewanella sp ANA-3 | Shewana3_0572 | -102 | 4.4 | TATTTTGACTCATGTCAAAAAT |
| Shewanella sp MR-4 | Shewmr4_0573 | -102 | 4.5 | TATTTTGACGCATGTCAAAATT |
| Shewanella sp MR-7 | Shewmr7_3457 | -102 | 4.5 | TATTTTGACGCATGTCAAAATT |
| Shewanella baltica OS155 | Sbal_0533 | -102 | 4.3 | TATTTTGACTCAAGTCAAAAAA |
| Shewanella denitrificans OS217 | Sden_0534 | -100 | 3.7 | ATTTTTGACTAGGGTCAATATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3510 | -237 | 4.2 | CATTGTGATCAATGTCATATCA |
| Shewanella loihica PV-4 | Shew_0454 | -124 | 4.3 | TATTTTGACGCCAGTCAAAAAA |
| Shewanella pealeana ATCC 700345 | Spea_3709 | -110 | 3.7 | AAAAATGACCAATGTCATAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_3794 | -110 | 3.9 | TAAAATGATGAGTGTCATAATT |
| Shewanella piezotolerans WP3 | swp_0563 | -110 | 3.6 | TTTATTGACGATAGTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0623 | -108 | 4.1 | TTTTTTGACTGAAGTCAAACTT |
|
Position: -132
Score: 3.7 Sequence: CACTATGATCTGCTTCTAATTT
Position: -103
Score: 3.7 Sequence: TAATGAGCCCCGCTTCAAACTT
Locus tag: SO0608
|
||||
| SO0608 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT | |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: petA | ||||
| Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | ||||
| Shewanella oneidensis MR-1 | SO0608 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3276 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0665 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0601 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0602 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3428 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0562 | -131 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -102 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3307 | -129 | 3.8 | CACTATGATCTGGTTCTAATTT |
| Shewanella loihica PV-4 | Shew_0570 | -130 | 4.1 | TACTATGATCTGCTTCTAATTT |
| -101 | 3.9 | TAATGAGCCCCGCCTCAAATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3536 | -78 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3630 | -128 | 4.6 | AACTATGATCTGGCTCAAATTT |
| Shewanella piezotolerans WP3 | swp_0793 | -131 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0801 | -132 | 4.4 | TACTATGATCAAGCTCAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4166 | -129 | 3.8 | TACTATGATCTGCTTCTGATTT |
|
Position: -308
Score: 3.8 Sequence: AATTGTGTAGTTATTCATATTC
Position: -142
Score: 4 Sequence: AACTGGTATTTTGATCACAATT
Locus tag: SO0617
|
||||
| SO0617 | -308 | 3.8 | AATTGTGTAGTTATTCATATTC | |
| -142 | 4 | AACTGGTATTTTGATCACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) | ||||
| Shewanella oneidensis MR-1 | SO0617 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0645 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_3529 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp ANA-3 | Shewana3_0610 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_0611 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_3419 | -308 | 3.8 | AATTGTGTAGTTATTCATATTC |
| Shewanella baltica OS155 | Sbal_0571 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella denitrificans OS217 | Sden_3193 | -136 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3299 | -137 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella amazonensis SB2B | Sama_3011 | -142 | 4 | AACTGGTATTTCGATCACAATT |
| Shewanella loihica PV-4 | Shew_0578 | -140 | 3.8 | AACTGGTATTTTGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_3516 | -138 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3610 | -138 | 3.7 | AACTGGCATTCTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0747 | -140 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0809 | -141 | 4.1 | AACTGGTATTTTGATCACATTT |
| -121 | 3.9 | TTTCGTTATTAATGTCACTTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0655 | -172 | 4.3 | ATATGTGCTGCTGATCTTATTT |
|
Position: -226
Score: 3.5 Sequence: AGATGTGATTAACTCTACAGAG
Position: -174
Score: 3.5 Sequence: TTAGTTGACTAATATCACTAAA
Locus tag: SO0624
|
||||
| SO0624 | -226 | 3.5 | AGATGTGATTAACTCTACAGAG | |
| -174 | 3.5 | TTAGTTGACTAATATCACTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: Cyclic AMP receptor protein Crp | ||||
| Shewanella oneidensis MR-1 | SO0624 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0652 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_3522 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_0617 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-4 | Shewmr4_0618 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-7 | Shewmr7_3412 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella baltica OS155 | Sbal_0578 | -174 | 3.7 | TTAGTTGACTTAAATCACTAAA |
| Shewanella denitrificans OS217 | Sden_3190 | -94 | 3.6 | AAACACGATCTTGGTCAAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3292 | -97 | 4 | AAATACGATCTCTATCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3004 | -96 | 3.8 | AATTTCGATCTGCATCATGGTT |
| Shewanella loihica PV-4 | Shew_0585 | -238 | 4 | AGATGTGATATGGGCAACATTG |
| Shewanella pealeana ATCC 700345 | Spea_3509 | -225 | 3.6 | AGATGTGATATAAGCCTAATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3603 | -226 | 3.5 | AGATGTGATACAAGCCTAATTG |
| Shewanella piezotolerans WP3 | swp_0755 | -309 | 4.2 | TTTATTGATAAGGTTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3873 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0662 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
|
Position: -267
Score: 4.2 Sequence: TTTAGTGATATTAGTCAACTAA
Locus tag: SO0625
|
||||
| SO0625 | -267 | 4.2 | TTTAGTGATATTAGTCAACTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sel1 | ||||
| Ortholog function: Sel1 domain protein repeat-containing protein precursor | ||||
| Shewanella oneidensis MR-1 | SO0625 | -267 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0653 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp W3-18-1 | Sputw3181_3521 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp ANA-3 | Shewana3_0618 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp MR-4 | Shewmr4_0619 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp MR-7 | Shewmr7_3411 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella baltica OS155 | Sbal_0579 | -278 | 4.4 | TTTAGTGATTTAAGTCAACTAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3291 | -222 | 4.1 | AACTTTGATAGAGATCGTATTT |
| -147 | 4.3 | ATTTGTGATGACGGTCGACTTT | ||
| -38 | 4 | TTATTTAATCAGCTTCATAAAT | ||
| Shewanella amazonensis SB2B | Sama_3003 | -319 | 3.8 | AACCATGATGCAGATCGAAATT |
| Shewanella loihica PV-4 | Shew_0586 | -279 | 3.8 | ATTAGTAATATATGTCAACTAA |
| Shewanella piezotolerans WP3 | swp_0756 | -153 | 3.8 | TTTTTTGAACCTTATCAATAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3872 | -296 | 4.3 | ATTAGTGATATAAGTCAACTAA |
| Shewanella woodyi ATCC 51908 | Swoo_0663 | -298 | 4.3 | ATTAGTGATATAAGTCAACTAA |
|
Position: -266
Score: 4.5 Sequence: ATGTGTGACATGGATCTAATTT
Locus tag: SO0769
|
||||
| SO0769 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon | ||||
| Shewanella oneidensis MR-1 | SO0769 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3220 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp W3-18-1 | Sputw3181_0721 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp ANA-3 | Shewana3_3510 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-4 | Shewmr4_3340 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-7 | Shewmr7_0613 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella baltica OS155 | Sbal_0608 | -270 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella amazonensis SB2B | Sama_0671 | -262 | 4 | ATTTGTGAGGTAGATCCTCAAA |
| Shewanella loihica PV-4 | Shew_0866 | -282 | 4.6 | TTATGTGATATAGATCTAGATT |
| Shewanella piezotolerans WP3 | swp_4101 | -140 | 3.8 | ATTTATACTCTACATCATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0951 | -254 | 3.8 | ATTTTTGTTCTACATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1001 | -311 | 4.5 | TTTTGTGATGTAGGTCTACATT |
|
Position: -47
Score: 4.3 Sequence: AAATTAGATCCATGTCACACAT
Locus tag: SO0770
|
||||
| SO0770 | -47 | 4.3 | AAATTAGATCCATGTCACACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mdh | ||||
| Ortholog function: malate dehydrogenase (EC 1.1.1.37) | ||||
| Shewanella oneidensis MR-1 | SO0770 | -47 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3219 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_0722 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_3509 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_3339 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_0614 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella baltica OS155 | Sbal_0609 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3173 | -45 | 4.2 | AATTTAGATCTATGTCACAAAC |
| Shewanella amazonensis SB2B | Sama_0672 | -46 | 3.8 | TTTGAGGATCTACCTCACAAAT |
| Shewanella loihica PV-4 | Shew_0867 | -47 | 4.5 | AATCTAGATCTATATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0903 | -46 | 3.9 | AAGATGGATCTGAATCACAAAA |
| Shewanella piezotolerans WP3 | swp_4100 | -46 | 3.9 | AAAACAGATCTAAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0952 | -136 | 4.1 | TTTATTGATGTAGAACAAAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1002 | -47 | 3.8 | AATGTAGACCTACATCACAAAA |
|
Position: -260
Score: 3.9 Sequence: TAATGTGATTGGTATAAACCTC
Position: -150
Score: 3.9 Sequence: AACTTTGATCCCGATCGACTAT
Locus tag: SO0849
|
||||
| SO0849 | -260 | 3.9 | TAATGTGATTGGTATAAACCTC | |
| -150 | 3.9 | AACTTTGATCCCGATCGACTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -260 | 3.9 | TAATGTGATTGGTATAAACCTC |
| -150 | 3.9 | AACTTTGATCCCGATCGACTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -147 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -147 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp ANA-3 | Shewana3_3429 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp MR-4 | Shewmr4_0705 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella sp MR-7 | Shewmr7_3317 | -149 | 3.9 | AACTTTGATCCCGATCGACTAT |
| Shewanella baltica OS155 | Sbal_3510 | -150 | 4 | AACTTTGATCCGGATCGACTAT |
| Shewanella loihica PV-4 | Shew_3205 | -154 | 3.8 | AACTTTGATCTCGATCTACAAA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -173 | 4.3 | ATTTGTGAACTAGATCAACACT |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -174 | 4.2 | ATCTGTGAATCAGATCACCATG |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -187 | 4.1 | ATCTGAGACATAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -179 | 4.4 | AAATGTGAACTCCATCACGCAC |
| -155 | 3.9 | AATATTGATCTTGATCGACTAA | ||
|
Position: -145
Score: 4.7 Sequence: TTATGCGATATTGTTCTCATTT
Locus tag: SO0862
|
||||
| SO0862 | -145 | 4.7 | TTATGCGATATTGTTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) | ||||
| Shewanella oneidensis MR-1 | SO0862 | -145 | 4.7 | TTATGCGATATTGTTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3139 | -142 | 4.2 | TTATGCGATATTGTTCTAAATT |
| Shewanella sp W3-18-1 | Sputw3181_0804 | -142 | 4.2 | TTATGCGATATTGTTCTAAATT |
| Shewanella sp ANA-3 | Shewana3_3416 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella sp MR-4 | Shewmr4_0718 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella sp MR-7 | Shewmr7_3304 | -143 | 3.9 | TTATGCGATATTGTTCTAATTC |
| Shewanella baltica OS155 | Sbal_3502 | -142 | 4.1 | TTATGCGATATTGTTCTTAATT |
| Shewanella amazonensis SB2B | Sama_2949 | -144 | 4.2 | TTATGTGATATTGTTCTGGTTT |
|
Position: -278
Score: 4.3 Sequence: CAATGTGATTGCTATCAACATA
Locus tag: SO0935
|
||||
| SO0935 | -278 | 4.3 | CAATGTGATTGCTATCAACATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nhaD | ||||
| Ortholog function: Na+/H+ antiporter NhaD type | ||||
| Shewanella oneidensis MR-1 | SO0935 | -278 | 4.3 | CAATGTGATTGCTATCAACATA |
| Shewanella sp ANA-3 | Shewana3_3348 | -239 | 4.3 | CAATGTGATTGATATCAATAAA |
| Shewanella sp MR-4 | Shewmr4_0778 | -239 | 4.3 | CAATGTGATTGATATCAATAAA |
| Shewanella sp MR-7 | Shewmr7_3245 | -239 | 4.3 | CAATGTGATTGATATCAATAAA |
| Shewanella amazonensis SB2B | Sama_2753 | -112 | 3.9 | AATTTTTACGTGATTCAGATAA |
| -107 | 4.1 | TTACGTGATTCAGATAAAGCTT | ||
| -87 | 4.7 | TTTTGTGGTGTATTTCGCATTT | ||
| Shewanella loihica PV-4 | Shew_0699 | -227 | 3.8 | AAGCGTGATCCTGTGCTAACTT |
| -77 | 4.2 | AAACTTGAGGCGCATCAAAATT | ||
|
Position: -117
Score: 4.6 Sequence: TTTATTGATGTAATTCACAGAT
Locus tag: SO0936
|
||||
| SO0936 | -117 | 4.6 | TTTATTGATGTAATTCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadC | ||||
| Ortholog function: transcriptional regulator-related protein | ||||
| Shewanella oneidensis MR-1 | SO0936 | -117 | 4.6 | TTTATTGATGTAATTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_3347 | -118 | 4.6 | TTTATTGATGTGTTTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0779 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella sp MR-7 | Shewmr7_3244 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella loihica PV-4 | Shew_0757 | -115 | 4.3 | TTATGTGCTGATTGTCACGAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0849 | -117 | 4.4 | TAGTGTGCTAGACCTCACGAAA |
| Shewanella piezotolerans WP3 | swp_4239 | -248 | 4.2 | TAACGTGCTAAAGCTCACGAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0879 | -117 | 4.1 | TAACGTGTTCCTTGTCACGAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0881 | -116 | 3.7 | ATATGAGCGCTAAATCACGCTT |
|
Position: -217
Score: 4.6 Sequence: TATCGTGCCTTCGCTCACATTA
Locus tag: SO0939
|
||||
| SO0939 | -217 | 4.6 | TATCGTGCCTTCGCTCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0939 | ||||
| Ortholog function: split-soret diheme cytochrome c | ||||
| Shewanella oneidensis MR-1 | SO0939 | -382 | 4.3 | TACTGTGATCCCGTTAACCCAA |
| -217 | 4.6 | TATCGTGCCTTCGCTCACATTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0879 | -388 | 4.4 | TACTGTGATCTTGCTAACCCAA |
| Shewanella sp W3-18-1 | Sputw3181_3294 | -388 | 4.4 | TACTGTGATCTTGCTAACCCAA |
| -253 | 3.5 | AAATGGATTTAAATTCACATAA | ||
| Shewanella sp ANA-3 | Shewana3_3344 | -384 | 4.3 | TACTGTGATCCCGTTAACCCAA |
| -217 | 3.8 | TAATGTGCGCTGCCGCAAATTG | ||
| Shewanella sp MR-4 | Shewmr4_0782 | -383 | 4.3 | TACTGTGATCCCGTTAACCCAA |
| -217 | 4 | TAATGTGCGTTGATGCACATTG | ||
| Shewanella sp MR-7 | Shewmr7_3241 | -383 | 4.3 | TACTGTGATCCCGTTAACCCAA |
| -217 | 3.9 | TAATGTGCGCAGGCACACATTG | ||
| Shewanella loihica PV-4 | Shew_0759 | -246 | 4.1 | TAGAGTGATCAGCTTCACATCG |
| Shewanella sediminis HAW-EB3 | Ssed_0882 | -349 | 4.1 | TTTTGCGAACAAAATCACACTG |
|
Position: -246
Score: 4.3 Sequence: TAATGTGAGCGAAGGCACGATA
Locus tag: SO0940
|
||||
| SO0940 | -246 | 4.3 | TAATGTGAGCGAAGGCACGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadC | ||||
| Ortholog function: transcriptional regulator-related protein | ||||
| Shewanella oneidensis MR-1 | SO0940 | -246 | 4.3 | TAATGTGAGCGAAGGCACGATA |
| Shewanella sp MR-4 | Shewmr4_0783 | -246 | 3.8 | CAATGTGCATCAACGCACATTA |
| Shewanella sp MR-7 | Shewmr7_3240 | -246 | 3.8 | CAATGTGTGCCTGCGCACATTA |
| Shewanella baltica OS155 | Sbal_0833 | -75 | 4 | TTGGGTTAGCAAGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3632 | -334 | 4.6 | AAATGTGATTCAAAGCAGATAA |
| -234 | 4.3 | TTTCATGATGTAAGTCTCATTA | ||
| -156 | 5 | TGACGTGATATCGCTCACAAAT | ||
| Shewanella loihica PV-4 | Shew_0760 | -234 | 3.9 | CGATGTGAAGCTGATCACTCTA |
| Shewanella pealeana ATCC 700345 | Spea_3438 | -227 | 4.2 | TTTCATGAACGATGTCACATTA |
| -149 | 3.8 | GAGTGTGACTAACGTCTCATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3519 | -227 | 4.6 | TTCTGTGACCGATAGCACATTA |
| -149 | 4.4 | CTGTGTGATTAACCTCTCATTT | ||
| Shewanella piezotolerans WP3 | swp_4010 | -258 | 4.3 | TTTATTGATCTAGATCTAATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0883 | -147 | 4.7 | CAGTGTGATTTTGTTCGCAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_0885 | -232 | 4.2 | AATGGTGAGCTGGATCATGTTA |
| -145 | 4.5 | CAATGTGATCCTCTTCGCAAAC | ||
|
Position: -118
Score: 4.6 Sequence: AAAAGTGATCAAGCTCAAACAT
Locus tag: SO1001
|
||||
| SO1001 | -118 | 4.6 | AAAAGTGATCAAGCTCAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chaA | ||||
| Ortholog function: calcium/proton antiporter | ||||
| Shewanella oneidensis MR-1 | SO1001 | -118 | 4.6 | AAAAGTGATCAAGCTCAAACAT |
| Shewanella sp ANA-3 | Shewana3_3290 | -118 | 4.3 | AAAAGCGATCTCGCTCAAAAAT |
| Shewanella baltica OS155 | Sbal_3384 | -104 | 4.2 | TACAGCGATCTAGCTCAAATAT |
|
Position: -56
Score: 4.4 Sequence: AACTGTGATTAATTTCACTCTA
Locus tag: SO1064
|
||||
| SO1064 | -56 | 4.4 | AACTGTGATTAATTTCACTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1064 | ||||
| Ortholog function: FOG: WD40 repeat | ||||
| Shewanella oneidensis MR-1 | SO1064 | -56 | 4.4 | AACTGTGATTAATTTCACTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3011 | -57 | 4.1 | AATAGTGATTAATCTCACTTTC |
| Shewanella sp W3-18-1 | Sputw3181_0938 | -57 | 4.1 | AATAGTGATTAATCTCACTTTC |
| Shewanella sp ANA-3 | Shewana3_0902 | -56 | 4.3 | AACTGTGATTAATCTCACTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_0967 | -92 | 3.8 | ATATGATATTCCAATTACATTA |
|
Position: -119
Score: 4.3 Sequence: TAGAGTGAAATTAATCACAGTT
Locus tag: SO1065
|
||||
| SO1065 | -119 | 4.3 | TAGAGTGAAATTAATCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fkpA | ||||
| Ortholog function: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8) | ||||
| Shewanella oneidensis MR-1 | SO1065 | -119 | 4.3 | TAGAGTGAAATTAATCACAGTT |
| Shewanella sp ANA-3 | Shewana3_0903 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella sp MR-4 | Shewmr4_3034 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella sp MR-7 | Shewmr7_0940 | -120 | 4.4 | TAGAGTGAGATTAATCACAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0881 | -99 | 4.1 | TAATCTGATTGGAATAACCTAT |
| Shewanella sediminis HAW-EB3 | Ssed_0918 | -96 | 3.9 | CAATGTAATTGGAATAACGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_0968 | -95 | 4.2 | TAATGTAATTGGAATATCATAT |
|
Position: -129
Score: 4.3 Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: SO1103
|
||||
| SO1103 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA-2 | ||||
| Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) | ||||
| Shewanella oneidensis MR-1 | SO1103 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0940 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp W3-18-1 | Sputw3181_3236 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp ANA-3 | Shewana3_0938 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-4 | Shewmr4_0936 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-7 | Shewmr7_0974 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella baltica OS155 | Sbal_0924 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella denitrificans OS217 | Sden_0982 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0949 | -127 | 4.3 | CAGCGTGATTATGATCGCATTT |
| Shewanella amazonensis SB2B | Sama_2539 | -127 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella loihica PV-4 | Shew_2881 | -131 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| -73 | 4.1 | ATGTTTGAAATCTATCTCATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3103 | -133 | 4.4 | CAGCGTGATTCTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3187 | -127 | 3.7 | CAGCGTGATTACAGTCGCACTT |
| Shewanella piezotolerans WP3 | swp_1167 | -132 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3431 | -130 | 4.1 | CAGCGTGATTGCGGTCGCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3617 | -46 | 4 | CAGCGTGATTGCGGTCGCAAAT |
|
Position: -68
Score: 5.1 Sequence: AAGTGTGATCTATCTTACATTT
Locus tag: SO1162
|
||||
| SO1162 | -68 | 5.1 | AAGTGTGATCTATCTTACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lipB | ||||
| Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||||
| Shewanella oneidensis MR-1 | SO1162 | -68 | 5.1 | AAGTGTGATCTATCTTACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2875 | -69 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1028 | -75 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp ANA-3 | Shewana3_0989 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-4 | Shewmr4_0985 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-7 | Shewmr7_1050 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella baltica OS155 | Sbal_3281 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella loihica PV-4 | Shew_2941 | -70 | 5.3 | AAATGTGATCTACCTTACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3155 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3240 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella piezotolerans WP3 | swp_3928 | -69 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3491 | -75 | 5.3 | AAATGTGATCTAGCTTACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3714 | -74 | 5.1 | AAGTGTGATCTAGCTTACAATT |
|
Position: -135
Score: 3.9 Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: SO1218
|
||||
| SO1218 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoA | ||||
| Ortholog function: thymidine phosphorylase (EC 2.4.2.4) | ||||
| Shewanella oneidensis MR-1 | SO1218 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2821 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp W3-18-1 | Sputw3181_1190 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp ANA-3 | Shewana3_1042 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-4 | Shewmr4_1038 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-7 | Shewmr7_1103 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella baltica OS155 | Sbal_3226 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella amazonensis SB2B | Sama_0974 | -135 | 3.9 | ATTTGTGATCCGCGTCGAAACG |
| Shewanella loihica PV-4 | Shew_2814 | -133 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella pealeana ATCC 700345 | Spea_3047 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3135 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella piezotolerans WP3 | swp_1230 | -139 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3377 | -134 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella woodyi ATCC 51908 | Swoo_3548 | -157 | 4.2 | AAGTGTGATCTAAATCTAGTTG |
|
Position: -342
Score: 4.4 Sequence: TAATGTGAGCGAGATAACAGTG
Locus tag: SO1247
|
||||
| SO1247 | -342 | 4.4 | TAATGTGAGCGAGATAACAGTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1247 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella sp MR-4 | Shewmr4_1059 | -273 | 4.3 | CAATGTGAGCTAGTTAACATCA |
| Shewanella sp MR-7 | Shewmr7_1131 | -273 | 4.3 | CAATGTGAGCTAGTTAACATCA |
| Shewanella baltica OS155 | Sbal_3204 | -159 | 3.8 | AATAGTGATCTTTCTCAGCATC |
| Shewanella amazonensis SB2B | Sama_0996 | -108 | 3.8 | TCATGTGAGCCAGGTTAAAAAA |
| Shewanella pealeana ATCC 700345 | Spea_3022 | -187 | 4.1 | TTTAGTGATGTTTTTTAGATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3518 | -312 | 4.8 | TTTTGTGAATTGTATCACTTAT |
|
Position: -297
Score: 4.4 Sequence: CATTGTGAGTTGAGTCATATTT
Position: -57
Score: 4.1 Sequence: TAAAATGAACTAGATCAAAATA
Locus tag: SO1278
|
||||
| SO1278 | -297 | 4.4 | CATTGTGAGTTGAGTCATATTT | |
| -57 | 4.1 | TAAAATGAACTAGATCAAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1278 | ||||
| Ortholog function: methyl-accepting chemotaxis protein | ||||
| Shewanella oneidensis MR-1 | SO1278 | -297 | 4.4 | CATTGTGAGTTGAGTCATATTT |
| -189 | 4 | TAATGGGAGCGTCATCACACTC | ||
| -57 | 4.1 | TAAAATGAACTAGATCAAAATA | ||
| Shewanella sp ANA-3 | Shewana3_3088 | -217 | 4.1 | TTTCGCGATAAATATCAAACTT |
| -60 | 4.1 | AAAAATGAACTAGATCAAAATA | ||
| Shewanella sp MR-4 | Shewmr4_2909 | -249 | 3.7 | TATTGTGAGTTAGGTCATGTCG |
| -60 | 4.1 | AAAAATGAACTAGATCAAAATA | ||
| Shewanella sp MR-7 | Shewmr7_2991 | -249 | 3.7 | TATTGTGAGTTAGGTCATGTCG |
| -60 | 4.1 | AAAAATGAACTAGATCAAAATA | ||
|
Position: -294
Score: 4.3 Sequence: AATAGTGATTTTTATTGCAAAT
Locus tag: SO1326
|
||||
| SO1326 | -294 | 4.3 | AATAGTGATTTTTATTGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1326 | ||||
| Ortholog function: COG1242: Predicted Fe-S oxidoreductase | ||||
| Shewanella oneidensis MR-1 | SO1326 | -294 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1137 | -293 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| -224 | 4.6 | ATTTGTGAGGTAGATCGCTAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_3027 | -293 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| -224 | 4.3 | GTTTGTGATGTAGATCGCTAAA | ||
| Shewanella sp ANA-3 | Shewana3_3048 | -294 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella sp MR-4 | Shewmr4_2870 | -55 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella sp MR-7 | Shewmr7_2952 | -55 | 4.3 | AATAGTGATTTTTATTGCAAAT |
| Shewanella baltica OS155 | Sbal_1179 | -293 | 3.9 | AATAGTGATTTTTATTGCAAAC |
| -225 | 4.2 | TGATGTGAGCAATATCTCAATG | ||
| -193 | 4.3 | TAATTTGAGGATGCGCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2950 | -128 | 3.9 | TTTTTTGAGTTTGTGCACAACT |
| Shewanella loihica PV-4 | Shew_1033 | -148 | 4.4 | AAAAGTGATTTTTATTGCATAT |
| -127 | 4 | TACAGTGAATTATTTAACAAAT | ||
| Shewanella pealeana ATCC 700345 | Spea_1014 | -303 | 3.9 | TAAATTGACCTGTATAACCTTA |
| -201 | 4 | TAAAGTGATTTTTTTTGCAGAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1062 | -210 | 4 | TAAAGTGATTTTTCTTGCAGAT |
| Shewanella piezotolerans WP3 | swp_3802 | -111 | 3.8 | TTATTTGAGCTAGCGCTAATAA |
| Shewanella woodyi ATCC 51908 | Swoo_1222 | -229 | 3.8 | AAATATGAGTTCTATTGCAAAT |
|
Position: -109
Score: 4 Sequence: AAAATCGATTTTGCTCACACAA
Locus tag: SO1328
|
||||
| SO1328 | -109 | 4 | AAAATCGATTTTGCTCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1328 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1328 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1139 | -109 | 3.8 | AATGGCGATTCTGCTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_3025 | -109 | 3.9 | AATGGCGATTCGGCTCACACTC |
| Shewanella sp ANA-3 | Shewana3_3046 | -109 | 3.9 | AAAATCGATTTTGCTCACAGTA |
| Shewanella sp MR-4 | Shewmr4_2868 | -109 | 4 | AAAATCGATTTTGCTCACACTA |
| Shewanella sp MR-7 | Shewmr7_2950 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella loihica PV-4 | Shew_1035 | -110 | 3.8 | TTTTGGGCAGCGCTTCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_1016 | -89 | 4.8 | ATTTTTGATTCAGTTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1064 | -89 | 4.6 | ATTTTTGATTCAGTTCACAGTC |
| Shewanella woodyi ATCC 51908 | Swoo_1224 | -111 | 4.3 | ATTTTAGAGATAGCTCACATTT |
|
Position: -162
Score: 4.7 Sequence: TGTATTGATCCAGATCACAAAT
Locus tag: SO1329
|
||||
| SO1329 | -162 | 4.7 | TGTATTGATCCAGATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaC | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO1329 | -162 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1140 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3024 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp ANA-3 | Shewana3_3045 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-4 | Shewmr4_2867 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-7 | Shewmr7_2949 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella baltica OS155 | Sbal_1182 | -101 | 4.7 | TAGATTGATCCAGATCACAAAT |
| Shewanella denitrificans OS217 | Sden_2784 | -157 | 4.8 | TGAATTGATCTAGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -158 | 4.4 | TCTATTGATCTAAATCACAAAT |
| Shewanella amazonensis SB2B | Sama_0861 | -102 | 4.2 | TGAATTGATTCAGATCACGTTA |
| Shewanella loihica PV-4 | Shew_1036 | -162 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella pealeana ATCC 700345 | Spea_1019 | -100 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1065 | -99 | 5.1 | TTATTTGACTTAGATCACAAAT |
| Shewanella piezotolerans WP3 | swp_3798 | -98 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1130 | -103 | 4.3 | TCATTTGACAAAGATCACAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1225 | -96 | 4.3 | TCATTTGACTAAGATCACAAAT |
|
Position: -124
Score: 4.2 Sequence: TAAAGTGATCTTTCTCTAAGAT
Locus tag: SO1363
|
||||
| SO1363 | -124 | 4.2 | TAAAGTGATCTTTCTCTAAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella oneidensis MR-1 | SO1363 | -124 | 4.2 | TAAAGTGATCTTTCTCTAAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1174 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2990 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_2832 | -124 | 4 | TAAGGTGATCTCCCTCTAAGAT |
| Shewanella sp MR-7 | Shewmr7_2914 | -124 | 3.6 | CAAGGTGATCTCTCTCTAAGAT |
| Shewanella baltica OS155 | Sbal_1216 | -124 | 4.1 | TAAGGTGATCGTTCTCTAATAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -125 | 4 | GAAGGTGATGTGGCTCATAAAA |
| Shewanella amazonensis SB2B | Sama_0895 | -113 | 3.6 | TAAGATGATCTGCTTCAAGGAA |
| Shewanella loihica PV-4 | Shew_1069 | -125 | 4.5 | TAATTTGATCCGCTTCATAGTT |
| Shewanella pealeana ATCC 700345 | Spea_1055 | -125 | 4.5 | AAAAGTGATCTCTTTCATAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1103 | -96 | 4.3 | TAAGGTGATCTCTTTCATGTTT |
| Shewanella piezotolerans WP3 | swp_3762 | -42 | 4.4 | TAAGGTGATCTCTTTCATAGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -170 | 3.4 | TAATGCAATTGGTATTATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -125 | 4.2 | GAATTTGATCTGTCTCAAACTT |
|
Position: -232
Score: 4.1 Sequence: TTGAGTGATAAAGCTAACAGTT
Locus tag: SO1388
|
||||
| SO1388 | -232 | 4.1 | TTGAGTGATAAAGCTAACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1388 | ||||
| Ortholog function: Xaa-Pro aminopeptidase (EC 3.4.11.9) | ||||
| Shewanella oneidensis MR-1 | SO1388 | -232 | 4.1 | TTGAGTGATAAAGCTAACAGTT |
| Shewanella sp ANA-3 | Shewana3_2986 | -233 | 4.2 | CTGAGTGATAAAGATAACATTT |
| Shewanella sp MR-4 | Shewmr4_2807 | -233 | 4.2 | CTGAGTGATAAAGATAACATTT |
| Shewanella sp MR-7 | Shewmr7_2890 | -233 | 4.5 | TTGAGTGATAAAGATAACATTT |
| Shewanella baltica OS155 | Sbal_3085 | -234 | 4.2 | TTTTATGCTAAGAATCACACAA |
| Shewanella denitrificans OS217 | Sden_0887 | -161 | 3.7 | TATTGTATACAATATCACGTTA |
|
Position: -214
Score: 3.7 Sequence: TTTTGTGTTTTAGCCGACATTT
Position: -150
Score: 3.8 Sequence: AACTGTTAGCTTTATCACTCAA
Locus tag: SO1389
|
||||
| SO1389 | -214 | 3.7 | TTTTGTGTTTTAGCCGACATTT | |
| -150 | 3.8 | AACTGTTAGCTTTATCACTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1389 | ||||
| Ortholog function: ROK family protein, in a cluster with chitinase | ||||
| Shewanella oneidensis MR-1 | SO1389 | -150 | 3.8 | AACTGTTAGCTTTATCACTCAA |
| Shewanella sp ANA-3 | Shewana3_2985 | -150 | 4.2 | AAATGTTATCTTTATCACTCAG |
| Shewanella sp MR-4 | Shewmr4_2806 | -150 | 4.2 | AAATGTTATCTTTATCACTCAG |
| Shewanella sp MR-7 | Shewmr7_2889 | -150 | 4.5 | AAATGTTATCTTTATCACTCAA |
| Shewanella baltica OS155 | Sbal_3084 | -180 | 4.4 | TTGTGTGATTCTTAGCATAAAA |
|
Position: -122
Score: 4.5 Sequence: TGGCGTGATCCAATTCACCTTT
Position: -82
Score: 4.1 Sequence: TATTGTTAGTCACGTAACAAAA
Locus tag: SO1410
|
||||
| SO1410 | -122 | 4.5 | TGGCGTGATCCAATTCACCTTT | |
| -82 | 4.1 | TATTGTTAGTCACGTAACAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1410 | ||||
| Ortholog function: conserved domain protein | ||||
| Shewanella oneidensis MR-1 | SO1410 | -122 | 4.5 | TGGCGTGATCCAATTCACCTTT |
| -82 | 4.1 | TATTGTTAGTCACGTAACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_0303 | -108 | 4.4 | TGCCGTGATCCAATTCACCTTT |
| -68 | 4.1 | TATTGTTAGTCACGTAACAATA | ||
| Shewanella loihica PV-4 | Shew_0272 | -151 | 3.9 | ATTCGCGAGCCAAGTCACGAAT |
| -110 | 4.6 | TGGCGTGATCCATTTCACCTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0321 | -157 | 4.1 | ATTCGCGACCGAGCTCACGAAT |
| -116 | 4.1 | CTGCGTGATCCATTTCAACTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3970 | -156 | 4.1 | ATTCGCGACTTGGCTCACGAAT |
| -115 | 4.1 | CTGCGTGATCCAATTCAACTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4188 | -154 | 3.9 | ATTCGCGAGCTCTGTCACGAAT |
| -113 | 4.2 | GTGCGTGATCCAATTCACCTTT | ||
|
Position: -220
Score: 4.3 Sequence: CTTTGTGAGTTACTTCAAATAC
Position: -76
Score: 4 Sequence: AGTCGTGACTCACTTCTCCTTA
Locus tag: SO1414
|
||||
| SO1414 | -220 | 4.3 | CTTTGTGAGTTACTTCAAATAC | |
| -76 | 4 | AGTCGTGACTCACTTCTCCTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1414 | ||||
| Ortholog function: flavocytochrome c flavin subunit | ||||
| Shewanella oneidensis MR-1 | SO1414 | -220 | 4.3 | CTTTGTGAGTTACTTCAAATAC |
| Shewanella sp MR-4 | Shewmr4_0299 | -263 | 4 | AATCGGGATTAAGCTCACATCA |
| Shewanella loihica PV-4 | Shew_0276 | -216 | 4.2 | CTTTGTGAATTACGTCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_0325 | -228 | 4.3 | CTTTGTGAATTACGTCATATAA |
| -181 | 4.1 | CAGATTGATTCCTTTCACATTT | ||
| -78 | 4.4 | TGGCGTGACTTAGTTCACCTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3966 | -269 | 4 | AATCGGGATTCACTTCACGCTA |
| -228 | 4.2 | CTTTGTGAGTTACGTCATACAA | ||
| -78 | 4.4 | TGGCGTGACTTAGTTCACCTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4184 | -280 | 3.8 | AATCGGGATTAGCTTCACGCAA |
| -239 | 4.1 | CTTTGTGAGTTACCTCATGTAA | ||
| -116 | 4 | CTTCGAGATCTGCTTCACGAAT | ||
|
Position: -94
Score: 4 Sequence: AGGTGTGACCTTTATCCCGATT
Locus tag: SO1415
|
||||
| SO1415 | -94 | 4 | AGGTGTGACCTTTATCCCGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1415 | ||||
| Ortholog function: transcriptional regulator, TetR family | ||||
| Shewanella oneidensis MR-1 | SO1415 | -135 | 3.8 | GTATTTGAAGTAACTCACAAAG |
| -94 | 4 | AGGTGTGACCTTTATCCCGATT | ||
| Shewanella sp MR-4 | Shewmr4_0298 | -241 | 3.8 | ATTCGTGAGTTATCTCGTGAAT |
| -94 | 4 | TGATGTGAGCTTAATCCCGATT | ||
| Shewanella loihica PV-4 | Shew_0277 | -137 | 4.4 | TTGTTTGACGTAATTCACAAAG |
| Shewanella pealeana ATCC 700345 | Spea_0326 | -247 | 4.1 | ATTCGTGAGTCAGCTCTCGAAT |
| -138 | 4.5 | TTATATGACGTAATTCACAAAG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3965 | -247 | 4.2 | ATTCGTGAGGCAGCTCTCGAAT |
| -138 | 4.3 | TTGTATGACGTAACTCACAAAG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4183 | -259 | 3.9 | ATTCGTGAAGCAGATCTCGAAG |
| -136 | 4.1 | TTACATGAGGTAACTCACAAAG | ||
|
Position: -91
Score: 3.8 Sequence: ATCTATGAGTTAGCTAACACTT
Locus tag: SO1418
|
||||
| SO1418 | -91 | 3.8 | ATCTATGAGTTAGCTAACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: apbE | ||||
| Ortholog function: thiamin biosynthesis lipoprotein ApbE | ||||
| Shewanella oneidensis MR-1 | SO1418 | -91 | 3.8 | ATCTATGAGTTAGCTAACACTT |
| Shewanella loihica PV-4 | Shew_1971 | -99 | 4.9 | TATTTTGATCTGCTTAACAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2090 | -32 | 4.4 | TTATTTGACACAGTTAACACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2063 | -95 | 4.4 | TTATTTGACGCAGTTAACACAA |
| Shewanella piezotolerans WP3 | swp_2515 | -105 | 4.4 | TTGTTTGACAGAGATAACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2280 | -209 | 4.5 | ATATTTGACCCAGTTAACACAT |
|
Position: -117
Score: 3.9 Sequence: AAGTGTTAGCTAACTCATAGAT
Locus tag: SO1419
|
||||
| SO1419 | -117 | 3.9 | AAGTGTTAGCTAACTCATAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1419 | ||||
| Ortholog function: lipoprotein, putative | ||||
| Shewanella oneidensis MR-1 | SO1419 | -117 | 3.9 | AAGTGTTAGCTAACTCATAGAT |
| Shewanella loihica PV-4 | Shew_1972 | -120 | 4.5 | TTTTGTTAAGCAGATCAAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2091 | -120 | 4.2 | TAGTGTTAACTGTGTCAAATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2064 | -93 | 4.1 | TTGTGTTAACTGCGTCAAATAA |
| Shewanella piezotolerans WP3 | swp_2516 | -119 | 4.5 | AAATGTTATCTCTGTCAAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2279 | -159 | 4.2 | ATGTGTTAACTGGGTCAAATAT |
|
Position: -262
Score: 4.6 Sequence: TTAAGTGACACCGATCACAGTT
Position: -180
Score: 4.2 Sequence: CAAAATGATCTAGATCATATAA
Locus tag: SO1522
|
||||
| SO1522 | -262 | 4.6 | TTAAGTGACACCGATCACAGTT | |
| -180 | 4.2 | CAAAATGATCTAGATCATATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lldP | ||||
| Ortholog function: L-lactate permease | ||||
| Shewanella oneidensis MR-1 | SO1522 | -262 | 4.6 | TTAAGTGACACCGATCACAGTT |
| -180 | 4.2 | CAAAATGATCTAGATCATATAA | ||
| Shewanella sp MR-4 | Shewmr4_2734 | -263 | 4.1 | TCGAGTGACATAGATCACAGTT |
| -181 | 4.2 | CAAAATGATCTAGATCATATTA | ||
| Shewanella sp MR-7 | Shewmr7_2807 | -263 | 4.1 | TCGAGTGACATAGATCACAGTT |
| -181 | 4.2 | CAAAATGATCTAGATCATATTA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2793 | -298 | 4.3 | TCTAGTGAGCCCCTTCACATTA |
| -197 | 3.7 | AAACGTGACCTCAAACACGCAC | ||
| Shewanella pealeana ATCC 700345 | Spea_2994 | -276 | 4 | TTAGGTGACACAGGTCACACCA |
| -241 | 4.1 | AACCGTGACAGATCTCACAATC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3083 | -300 | 4.5 | TTACGTGACACGGATCACAGAG |
| -265 | 4.5 | AACTGTGATCAGTCTCACTAAT | ||
|
Position: -149
Score: 4.7 Sequence: ATTCGTGATATTGCTCACTATT
Position: -95
Score: 3.8 Sequence: AATAGTGAGAAAAAACACCAAA
Locus tag: SO1538
|
||||
| SO1538 | -149 | 4.7 | ATTCGTGATATTGCTCACTATT | |
| -95 | 3.8 | AATAGTGAGAAAAAACACCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) | ||||
| Shewanella oneidensis MR-1 | SO1538 | -149 | 4.7 | ATTCGTGATATTGCTCACTATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1286 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_2820 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp ANA-3 | Shewana3_2890 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-4 | Shewmr4_2720 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-7 | Shewmr7_2791 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella baltica OS155 | Sbal_1368 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella denitrificans OS217 | Sden_2561 | -143 | 3.8 | AAAAGGGATATTTCTCACTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2779 | -148 | 4.7 | TAATGTGATAATACTCACTATT |
| Shewanella amazonensis SB2B | Sama_2423 | -89 | 4.5 | AATCGAGACATAAATCACATAA |
| Shewanella loihica PV-4 | Shew_2760 | -150 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella pealeana ATCC 700345 | Spea_2980 | -146 | 4.2 | AAACGTGAGATCGCTCACTCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3069 | -149 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella piezotolerans WP3 | swp_3606 | -293 | 4.6 | AAACGTGAGATTGCTCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_3318 | -151 | 4.7 | AAATGTGAGATTGCTCACTATT |
| Shewanella woodyi ATCC 51908 | Swoo_3466 | -148 | 4.3 | AAACGTGAGACTGCTCACTATT |
|
Position: -75
Score: 4 Sequence: TTCCTTGATTTAGCTCACACTC
Locus tag: SO1613
|
||||
| SO1613 | -75 | 4 | TTCCTTGATTTAGCTCACACTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1613 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO1613 | -75 | 4 | TTCCTTGATTTAGCTCACACTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1334 | -142 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_2769 | -142 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp ANA-3 | Shewana3_2830 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp MR-4 | Shewmr4_2656 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella sp MR-7 | Shewmr7_2723 | -136 | 4.1 | TTCCTTGATTTAGATCACACTC |
| Shewanella baltica OS155 | Sbal_1436 | -138 | 4.1 | TTCCTTGACTTAGCTCACACTT |
| Shewanella amazonensis SB2B | Sama_1125 | -126 | 4.5 | TTCCTTGATCCAGATCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2994 | -181 | 4.6 | TTCCTTGATCTAGATCACACTA |
| Shewanella piezotolerans WP3 | swp_3538 | -271 | 4.4 | TTCCTTGATCGAGATCACACAA |
|
Position: -270
Score: 4.4 Sequence: TTTTGTTAACTCCCTCACAGTT
Locus tag: SO1665
|
||||
| SO1665 | -270 | 4.4 | TTTTGTTAACTCCCTCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galU | ||||
| Ortholog function: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) | ||||
| Shewanella amazonensis SB2B | Sama_2223 | -304 | 4.5 | TTTTGTTAACTGCCTCACGTTT |
|
Position: -75
Score: 4.5 Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: SO1666
|
||||
| SO1666 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO1666 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_2781 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-4 | Shewmr4_2607 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-7 | Shewmr7_2674 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella baltica OS155 | Sbal_1484 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAT |
| Shewanella denitrificans OS217 | Sden_2595 | -61 | 4.1 | AATTGTGCGCCATGGCACACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -74 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella amazonensis SB2B | Sama_2222 | -76 | 4.6 | AAACGTGAGGCAGTTAACAAAA |
| Shewanella loihica PV-4 | Shew_1435 | -40 | 4.7 | AAGTGTGATCCTGTTAACAAAC |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -126 | 4.9 | AACTGTGATCGGGTTAACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -86 | 4.7 | AACCGTGATCTAGTTAACAAAA |
| Shewanella piezotolerans WP3 | swp_1650 | -76 | 5 | AACTGTGATCTGGTTAACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -75 | 4.8 | AACTGTGATGGAGTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -74 | 4.7 | AAGTGTGAAGTGGTTAACAAAA |
|
Position: -200
Score: 5.1 Sequence: AAATGTGATTTTGTTCACGCTA
Locus tag: SO1670
|
||||
| SO1670 | -200 | 5.1 | AAATGTGATTTTGTTCACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fahA | ||||
| Ortholog function: Fumarylacetoacetate hydrolase family protein | ||||
| Shewanella oneidensis MR-1 | SO1670 | -200 | 5.1 | AAATGTGATTTTGTTCACGCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp W3-18-1 | Sputw3181_2712 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp ANA-3 | Shewana3_2778 | -197 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-4 | Shewmr4_2604 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_2671 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella baltica OS155 | Sbal_1487 | -235 | 5 | AAATGTGATTTTGGTCACGCTA |
| Shewanella denitrificans OS217 | Sden_2592 | -107 | 4.7 | AAATGTGATTTTGCGCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -116 | 4.1 | AAATGTGATTTGGTACTTACTA |
| Shewanella amazonensis SB2B | Sama_2219 | -111 | 5 | AATTGTGATTTGAGTCACGCTA |
| Shewanella loihica PV-4 | Shew_1438 | -130 | 4.4 | GAGTGTGATTTGTATCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -158 | 5.3 | AAGTGTGATTTCGTTCACACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -144 | 4.5 | CAGTGTGATTTATCTCACGCTA |
| Shewanella piezotolerans WP3 | swp_1653 | -140 | 5 | TAGTGTGATTTAGCTCACGCTA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -116 | 4.1 | GAGCGTGATTCATGTCACACTA |
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -133 | 5 | TATTGTGATTTGTGTCACGCTA |
|
Position: -161
Score: 4.4 Sequence: TAGCGTGATTTGGATCTCAATG
Position: -110
Score: 4.4 Sequence: AATTTTGATTTGGATCAATAAT
Locus tag: SO1673
|
||||
| SO1673 | -161 | 4.4 | TAGCGTGATTTGGATCTCAATG | |
| -110 | 4.4 | AATTTTGATTTGGATCAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -161 | 4.4 | TAGCGTGATTTGGATCTCAATG |
| -110 | 4.4 | AATTTTGATTTGGATCAATAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| -158 | 4 | TTTCGTGATTAGGATCTCAAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2775 | -107 | 3.8 | AATCTTGATTTGGATCAATAAG |
| Shewanella baltica OS155 | Sbal_1490 | -158 | 4 | TTTCGTGATTCAGCTCCCATGT |
| Shewanella denitrificans OS217 | Sden_2589 | -157 | 4.2 | TTTTGTGAATTAGATCAAGACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -232 | 3.9 | TCGCTTGATCAACCTCACAAAA |
| -170 | 3.9 | TTTTGTGATCCAAATCAACAGC | ||
| Shewanella amazonensis SB2B | Sama_1371 | -56 | 4 | AATTGTTACGGACGTAACAGAA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -159 | 4.4 | TATTGTGATCTAGATCCTTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -161 | 5.1 | AAATGTGATCTTCATCGCCTTT |
| -111 | 4.8 | ATTTTTGATTCAGGTCAAATTT | ||
| Shewanella piezotolerans WP3 | swp_3395 | -214 | 4 | TTGCGTGTTGTATGTCACCAAA |
| -161 | 4.4 | AAATGTGATCGCGATCACTGCT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -158 | 4.5 | TTTTGTGAGCTTGGTCATGTAT |
| -108 | 3.7 | TTAATTGATCTGGATCAATAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -211 | 4.3 | AATTATGACGTCGCTCACTAAA |
| -158 | 4.5 | AAGTGTGAGTTCGATCAAGTAT | ||
| -108 | 3.9 | TTTATTGATTTGGATCAATAAA | ||
|
Position: -96
Score: 4.5 Sequence: AAGTGTGATACTTGCCACAAAA
Locus tag: SO1689
|
||||
| SO1689 | -96 | 4.5 | AAGTGTGATACTTGCCACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1689 | ||||
| Ortholog function: lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4) | ||||
| Shewanella oneidensis MR-1 | SO1689 | -96 | 4.5 | AAGTGTGATACTTGCCACAAAA |
| Shewanella sp ANA-3 | Shewana3_2761 | -96 | 4.5 | AAGTGTGATACTTGCCACAAAA |
| Shewanella sp MR-4 | Shewmr4_2587 | -96 | 4.5 | AAGTGTGATACTTGCCACAAAA |
| Shewanella sp MR-7 | Shewmr7_2654 | -96 | 4.6 | AAGTGTGATATTTGCCACAAAA |
|
Position: 14
Score: 3.5 Sequence: CAATTTGATCACTCTAGCGTTA
Locus tag: SO1776
|
||||
| SO1776 | 14 | 3.5 | CAATTTGATCACTCTAGCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrB | ||||
| Ortholog function: outer membrane protein, MtrB | ||||
| Shewanella oneidensis MR-1 | SO1776 | -248 | 3.7 | TGTTGTTTTTTTGCTCTCAATT |
| -190 | 3.5 | TAGAAAGATCCAAGTCACACAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1476 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_2625 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_2678 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_2512 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_2580 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella baltica OS155 | Sbal_1587 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2639 | -164 | 3.8 | TAGGCTGATCATCATCACACAA |
| Shewanella amazonensis SB2B | Sama_1206 | -230 | 3.9 | TTTTTTGATCTGAAACAGCTTT |
| -178 | 3.6 | TAGCCGGATCCAGTTCACACAT | ||
| Shewanella loihica PV-4 | Shew_2527 | -179 | 3.6 | TAGAAAGATCTCGGTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2786 | -264 | 4 | TTTTATTACATTTATCACGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_1523 | -191 | 4 | TAGGCTGATCTAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3127 | -288 | 3.7 | ATGAGTTACAACTTTCACACAT |
|
Position: -248
Score: 3.7 Sequence: TGTTGTTTTTTTGCTCTCAATT
Position: -190
Score: 3.5 Sequence: TAGAAAGATCCAAGTCACACAT
Position: -84
Score: 3.4 Sequence: TCTAGTGATCAAATACACAGAC
Locus tag: SO1778
|
||||
| SO1778 | -248 | 3.7 | TGTTGTTTTTTTGCTCTCAATT | |
| -190 | 3.5 | TAGAAAGATCCAAGTCACACAT | ||
| -84 | 3.4 | TCTAGTGATCAAATACACAGAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -248 | 3.7 | TGTTGTTTTTTTGCTCTCAATT |
| -190 | 3.5 | TAGAAAGATCCAAGTCACACAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_2676 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_2510 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_2578 | -189 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella baltica OS155 | Sbal_1589 | -190 | 3.5 | TAGAAAGATCCAAGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -164 | 3.8 | TAGGCTGATCATCATCACACAA |
| Shewanella amazonensis SB2B | Sama_1208 | -230 | 3.9 | TTTTTTGATCTGAAACAGCTTT |
| -178 | 3.6 | TAGCCGGATCCAGTTCACACAT | ||
| Shewanella loihica PV-4 | Shew_2525 | -179 | 3.6 | TAGAAAGATCTCGGTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -264 | 4 | TTTTATTACATTTATCACGTAT |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -191 | 4 | TAGGCTGATCTAGGTCACACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -288 | 3.7 | ATGAGTTACAACTTTCACACAT |
|
Position: -165
Score: 4.1 Sequence: TAGTCAGATCTCAATCACATTA
Locus tag: SO1779
|
||||
| SO1779 | -165 | 4.1 | TAGTCAGATCTCAATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella oneidensis MR-1 | SO1779 | -339 | 3.8 | TTATGTGACAAAAATCTCTATG |
|
Position: -339
Score: 3.8 Sequence: TTATGTGACAAAAATCTCTATG
Locus tag: SO1782
|
||||
| SO1782 | -339 | 3.8 | TTATGTGACAAAAATCTCTATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella oneidensis MR-1 | SO1782 | -339 | 3.8 | TTATGTGACAAAAATCTCTATG |
| Shewanella sp ANA-3 | Shewana3_2672 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_2506 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_2574 | -295 | 4.4 | TTATGTGACAAAAATCTCAATG |
| -172 | 4.3 | AAGTGAGAACAAGATCACACTT | ||
| Shewanella baltica OS155 | Sbal_1593 | -304 | 3.8 | TTATGTGACAAAAATACCAATG |
| -181 | 4.8 | AAACGTGATCAACATCACGCTT | ||
| Shewanella amazonensis SB2B | Sama_1213 | -189 | 3.9 | CGGCGTGACACTCATCACACTT |
| Shewanella loihica PV-4 | Shew_2519 | -260 | 4.5 | TTATGTGACAGATATCTCAATC |
| -170 | 5.3 | CAACGTGATCTAGATCACATAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2692 | -286 | 4.1 | TTATGTGACAAAACTCTCAACT |
| -197 | 5.4 | AAGTGTGATACGCATCACATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -305 | 4.5 | TTATGTGATAAATATCTCAACT |
| -184 | 4.6 | AAACTTGACACAGATCACACTT | ||
| Shewanella piezotolerans WP3 | swp_3272 | -308 | 4.2 | TTATGTGACAAATCTCTCAACT |
| -185 | 4.6 | CAGTGTGACGTAGATCACGCTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -291 | 4 | TTATGTGACAAAAGTCTCAACT |
| -174 | 4.8 | TAGCGTGACCAAGATCACACTT | ||
|
Position: -153
Score: 4 Sequence: CATAGAGATTTTTGTCACATAA
Locus tag: SO1783
|
||||
| SO1783 | -153 | 4 | CATAGAGATTTTTGTCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -153 | 4 | CATAGAGATTTTTGTCACATAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-4 | Shewmr4_2505 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-7 | Shewmr7_2573 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella baltica OS155 | Sbal_1594 | -276 | 5 | AAGCGTGATGTTGATCACGTTT |
| Shewanella denitrificans OS217 | Sden_2415 | -148 | 3.9 | ATCTGCGGTATTTATCACATAA |
| Shewanella amazonensis SB2B | Sama_1214 | -228 | 3.8 | AAGTGTGATGAGTGTCACGCCG |
| Shewanella loihica PV-4 | Shew_2518 | -245 | 5.2 | ATATGTGATCTAGATCACGTTG |
| -155 | 4.2 | GATTGAGATATCTGTCACATAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -247 | 5.5 | TTATGTGATGCGTATCACACTT |
| -158 | 4.2 | AGTTGAGAGTTTTGTCACATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -279 | 4.7 | AAGTGTGATCTGTGTCAAGTTT |
| -158 | 4.7 | AGTTGAGATATTTATCACATAA | ||
| Shewanella piezotolerans WP3 | swp_3271 | -280 | 4.6 | AAGCGTGATCTACGTCACACTG |
| -157 | 4.2 | AGTTGAGAGATTTGTCACATAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -275 | 4.9 | AAGTGTGATCTTGGTCACGCTA |
| -158 | 4.3 | AGTTGAGACTTTTGTCACATAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -272 | 4.7 | AATCGTGACTTATATCACTTAA |
| -157 | 4.2 | AGTTGGGACTTTTGTCACATAA | ||
|
Position: -149
Score: 4.2 Sequence: AACTGAGATCCTGATCACACAG
Locus tag: SO1787
|
||||
| SO1787 | -149 | 4.2 | AACTGAGATCCTGATCACACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1787 | ||||
| Ortholog function: probable membrane protein YPO2362 | ||||
| Shewanella oneidensis MR-1 | SO1787 | -149 | 4.2 | AACTGAGATCCTGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1483 | -154 | 4 | AACTGAGATCGGGATCACATGA |
| Shewanella sp W3-18-1 | Sputw3181_2618 | -154 | 4 | AACTGAGATCGGGATCACATGA |
| Shewanella sp ANA-3 | Shewana3_2668 | -151 | 4.4 | AACTGAGATCCTGATCACATAG |
| Shewanella sp MR-4 | Shewmr4_2502 | -151 | 3.7 | AACTGAGATCCTGATCACACCG |
| Shewanella sp MR-7 | Shewmr7_2570 | -151 | 3.7 | AACTGAGATCCTGATCACACCG |
| Shewanella baltica OS155 | Sbal_1597 | -156 | 4.2 | AACTGAGATCCTGATCACACAG |
|
Position: -151
Score: 4.3 Sequence: CTGTGTGATCAGGATCTCAGTT
Locus tag: SO1788
|
||||
| SO1788 | -151 | 4.3 | CTGTGTGATCAGGATCTCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: miaE | ||||
| Ortholog function: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) | ||||
| Shewanella oneidensis MR-1 | SO1788 | -151 | 4.3 | CTGTGTGATCAGGATCTCAGTT |
| -12 | 3.7 | TTGAGTGATCCCATGCAACAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1484 | -105 | 4.5 | TCATGTGATCCCGATCTCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_2617 | -105 | 4.5 | TCATGTGATCCCGATCTCAGTT |
| Shewanella sp ANA-3 | Shewana3_2667 | -150 | 4.5 | CTATGTGATCAGGATCTCAGTT |
| Shewanella sp MR-4 | Shewmr4_2501 | -151 | 4.1 | CGGTGTGATCAGGATCTCAGTT |
| Shewanella sp MR-7 | Shewmr7_2569 | -150 | 4.1 | CGGTGTGATCAGGATCTCAGTT |
| Shewanella baltica OS155 | Sbal_1598 | -149 | 4.3 | CTGTGTGATCAGGATCTCAGTT |
|
Position: -92
Score: 3.8 Sequence: AATTGATAAGAAGATCACAGTA
Locus tag: SO1963
|
||||
| SO1963 | -92 | 3.8 | AATTGATAAGAAGATCACAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgA | ||||
| Ortholog function: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) | ||||
| Shewanella oneidensis MR-1 | SO1963 | -92 | 3.8 | AATTGATAAGAAGATCACAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1671 | -66 | 4.1 | AATTGATAACAAGATCACATAA |
| Shewanella sp W3-18-1 | Sputw3181_2354 | -66 | 4.1 | AATTGATAACAAGATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2481 | -144 | 3.9 | TTTTTAGATTGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella sp MR-4 | Shewmr4_2291 | -144 | 3.9 | TTTTTAGATTGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella sp MR-7 | Shewmr7_2363 | -144 | 3.9 | TTTTTAGATAGAGATAACAGAT |
| -88 | 3.9 | AATTGATAAGAAGATCACACTA | ||
| Shewanella baltica OS155 | Sbal_2615 | -144 | 3.5 | TTTTTAGATTGAGATAACGGAT |
| -88 | 4 | AATTGATAACAAGATCACACTA | ||
| Shewanella denitrificans OS217 | Sden_2162 | -122 | 3.6 | AATTGATAGCTAGATCACAACG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2326 | -126 | 3.5 | TTTGTTGATCTTTACCACTAAA |
| -106 | 5 | AATTGTAAGTTAGATCACATAT | ||
| Shewanella amazonensis SB2B | Sama_1569 | -78 | 4.5 | AATTGATACCCAGATCACATAT |
| Shewanella loihica PV-4 | Shew_2154 | -61 | 5.1 | AATTGTTACTTAGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_1874 | -63 | 4 | AAATTGAACCTAGATCACATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2409 | -63 | 3.9 | AAATTAAAGCTAGATCACATTA |
| Shewanella piezotolerans WP3 | swp_2870 | -84 | 3.5 | TTTTTTGCTGTTGTTAGCAACT |
| -61 | 4.1 | AATTGATAACAAGATCACATTA | ||
|
Position: -148
Score: 4.4 Sequence: TACTGTGATCTTCTTATCAATT
Locus tag: SO1965
|
||||
| SO1965 | -148 | 4.4 | TACTGTGATCTTCTTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgR | ||||
| Ortholog function: Tyrosine degradation transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1965 | -148 | 4.4 | TACTGTGATCTTCTTATCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1672 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp W3-18-1 | Sputw3181_2353 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp ANA-3 | Shewana3_2480 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-4 | Shewmr4_2290 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-7 | Shewmr7_2362 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCTATCTAAAAA | ||
| Shewanella baltica OS155 | Sbal_2614 | -148 | 4.7 | TAGTGTGATCTTGTTATCAATT |
| Shewanella denitrificans OS217 | Sden_2161 | -146 | 4.3 | CGTTGTGATCTAGCTATCAATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2325 | -135 | 5.1 | ATATGTGATCTAACTTACAATT |
| Shewanella amazonensis SB2B | Sama_1570 | -135 | 4.7 | ATATGTGATCTGGGTATCAATT |
| Shewanella loihica PV-4 | Shew_2153 | -115 | 5.1 | TTATGTGATCTAAGTAACAATT |
| Shewanella pealeana ATCC 700345 | Spea_1875 | -114 | 4.3 | TAATGTGATCTAGGTTCAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2408 | -114 | 4.5 | TAATGTGATCTAGCTTTAATTT |
| Shewanella piezotolerans WP3 | swp_2869 | -115 | 4.9 | TAATGTGATCTTGTTATCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2686 | -116 | 4.5 | ATTTGTGACATACCTATCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1933 | -116 | 4.5 | ATGTGTGATCTAAGTATCAATT |
|
Position: -70
Score: 4.7 Sequence: TTTTGTGATCTTCGTCACTGTA
Locus tag: SO2010
|
||||
| SO2010 | -70 | 4.7 | TTTTGTGATCTTCGTCACTGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2010 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2010 | -70 | 4.7 | TTTTGTGATCTTCGTCACTGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2305 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp W3-18-1 | Sputw3181_1703 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp MR-4 | Shewmr4_2257 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella sp MR-7 | Shewmr7_2329 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella baltica OS155 | Sbal_2577 | -65 | 5 | TTTTGTGATCTAAATCACTGTA |
| Shewanella denitrificans OS217 | Sden_2384 | -81 | 4.8 | AAATGTGATCCAGCTCAGCTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2410 | -116 | 4.8 | TTTTGTGATCGACTTCACGTCT |
| Shewanella amazonensis SB2B | Sama_1307 | -51 | 4.3 | TTTTGTGAGCTGCATCACGGCA |
| Shewanella loihica PV-4 | Shew_2238 | -48 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella pealeana ATCC 700345 | Spea_1505 | -51 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1587 | -80 | 4 | TAGTGTGATTGATATCTATAAT |
| Shewanella piezotolerans WP3 | swp_1711 | -21 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2855 | -49 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1790 | -48 | 4.1 | TAAATTGATCTAGATCAATAAA |
|
Position: -165
Score: 3.4 Sequence: AAATCAGATCCACGTCATGTTA
Position: -105
Score: 4 Sequence: ATTCTTGATATGCATCAATAAT
Locus tag: SO2099
|
||||
| SO2099 | -165 | 3.4 | AAATCAGATCCACGTCATGTTA | |
| -105 | 4 | ATTCTTGATATGCATCAATAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyaA | ||||
| Ortholog function: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1) | ||||
| Shewanella oneidensis MR-1 | SO2099 | -105 | 4 | ATTCTTGATATGCATCAATAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2088 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1924 | -167 | 3.7 | AAATTAGATCTGCGTCATGTTA |
| -107 | 4 | ATTCTTGATATACATCAATAAT | ||
| Shewanella sp ANA-3 | Shewana3_1880 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-4 | Shewmr4_1822 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella sp MR-7 | Shewmr7_2155 | -166 | 3.9 | AAATTAGATCTGCATCATGTTA |
| -106 | 4.2 | ATTCTTGATATGCATCAAGAAT | ||
| Shewanella baltica OS155 | Sbal_1889 | -229 | 3.9 | TTAAGTGACCGATTTCATCCAA |
| -167 | 3.7 | AAATTAGATCTACGTCATGTTA | ||
| -107 | 4.2 | ATTCTTGATATACATCAAGAAT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2103 | -174 | 3.8 | TTTTGTTAACTTGATCAACATC |
| -168 | 4.4 | TAACTTGATCAACATCATAAAT | ||
| Shewanella amazonensis SB2B | Sama_1679 | -172 | 3.4 | AAGCATGACACACCTCATGTTA |
| Shewanella loihica PV-4 | Shew_1765 | -164 | 3.8 | AAACTTGATCCAGCTCATAGCT |
| -103 | 3.7 | AATGTTGACATACATCAACATT | ||
| Shewanella pealeana ATCC 700345 | Spea_2033 | -211 | 4.6 | TTACGTGACCACGATCACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2261 | -212 | 5 | TTACGTGATCTCCATCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1908 | -162 | 4 | AAAGATGATCTAGTTCATATTG |
|
Position: -265
Score: 4.1 Sequence: ATTATTGATGCATATCAAGAAT
Locus tag: SO2100
|
||||
| SO2100 | -265 | 4.1 | ATTATTGATGCATATCAAGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: resA | ||||
| Ortholog function: C-type cytochrome biogenesis protein ResA (thioredoxin) | ||||
| Shewanella oneidensis MR-1 | SO2100 | -265 | 4.1 | ATTATTGATGCATATCAAGAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2087 | -279 | 4.2 | ATTATTGATGTATATCAAGAAT |
| -219 | 3.9 | TAACATGACGCAGATCTAATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_1925 | -279 | 4.2 | ATTATTGATGTATATCAAGAAT |
| -219 | 3.9 | TAACATGACGCAGATCTAATTT | ||
| Shewanella sp ANA-3 | Shewana3_1881 | -251 | 4.2 | ATTCTTGATGCATATCAAGAAT |
| -191 | 4.2 | TAACATGATGCAGATCTAATTT | ||
| Shewanella sp MR-4 | Shewmr4_1823 | -266 | 4.2 | ATTCTTGATGCATATCAAGAAT |
| -206 | 4.2 | TAACATGATGCAGATCTAATTT | ||
| Shewanella sp MR-7 | Shewmr7_2154 | -251 | 4.2 | ATTCTTGATGCATATCAAGAAT |
| -191 | 4.2 | TAACATGATGCAGATCTAATTT | ||
| Shewanella baltica OS155 | Sbal_1890 | -301 | 4.3 | ATTCTTGATGTATATCAAGAAT |
| -241 | 4 | TAACATGACGTAGATCTAATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_2219 | -140 | 4.1 | ATTTTTGATGCTAATCAAATGA |
|
Position: -79
Score: 4.8 Sequence: ACACGTGATCTTGATCACACTT
Locus tag: SO2111
|
||||
| SO2111 | -79 | 4.8 | ACACGTGATCTTGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2111 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2111 | -79 | 4.8 | ACACGTGATCTTGATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1894 | -66 | 4.5 | ACACGAGATCTAGATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_2114 | -66 | 4.5 | ACACGAGATCTAGATCACATTT |
| Shewanella sp ANA-3 | Shewana3_1891 | -79 | 3.9 | ACCCGCGATCTTGATCACACTT |
| Shewanella sp MR-4 | Shewmr4_1833 | -100 | 3.9 | GTCTTTGATCTGAATCAAAAAA |
| -79 | 4.3 | ACACGCGATCTTGATCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_2144 | -100 | 3.9 | GTCTTTGATCTGAATCAAAAAA |
| -79 | 4.3 | ACACGCGATCTTGATCACACTT | ||
| Shewanella baltica OS155 | Sbal_1900 | -78 | 4 | ACACGCGATCTAGATCACACTG |
|
Position: -95
Score: 4.4 Sequence: AAGTGTGATCAAGATCACGTGT
Locus tag: SO2112
|
||||
| SO2112 | -95 | 4.4 | AAGTGTGATCAAGATCACGTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rplY | ||||
| Ortholog function: LSU ribosomal protein L25p | ||||
| Shewanella oneidensis MR-1 | SO2112 | -95 | 4.4 | AAGTGTGATCAAGATCACGTGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1895 | -245 | 4.4 | AAATGTGATCTAGATCTCGTGT |
| Shewanella sp W3-18-1 | Sputw3181_2113 | -245 | 4.4 | AAATGTGATCTAGATCTCGTGT |
| Shewanella sp ANA-3 | Shewana3_1892 | -234 | 3.8 | TTTTTTGATTCAGATCAAAGCC |
| Shewanella sp MR-4 | Shewmr4_1834 | -255 | 4.1 | AAGTGTGATCAAGATCGCGTGT |
| -234 | 4.3 | TTTTTTGATTCAGATCAAAGAC | ||
| Shewanella sp MR-7 | Shewmr7_2143 | -255 | 4.1 | AAGTGTGATCAAGATCGCGTGT |
| -234 | 4.3 | TTTTTTGATTCAGATCAAAGAC | ||
| Shewanella baltica OS155 | Sbal_1901 | -247 | 4 | CAGTGTGATCTAGATCGCGTGT |
| Shewanella amazonensis SB2B | Sama_1614 | -233 | 3.9 | AAATGTGAACAAGATCACAGGC |
|
Position: -105
Score: 4.6 Sequence: AAATGTGATGTAGCCCAAAAAG
Locus tag: SO2222
|
||||
| SO2222 | -105 | 4.6 | AAATGTGATGTAGCCCAAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fumB | ||||
| Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2) | ||||
| Shewanella oneidensis MR-1 | SO2222 | -105 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1807 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp W3-18-1 | Sputw3181_2218 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp ANA-3 | Shewana3_2302 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-4 | Shewmr4_2124 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-7 | Shewmr7_2200 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella baltica OS155 | Sbal_1918 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella denitrificans OS217 | Sden_1912 | -131 | 3.9 | AAATGTGATGTAGCCCCAAAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2156 | -122 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella amazonensis SB2B | Sama_1688 | -144 | 4.2 | ACTTGTGATGTAGCCCAAAGAT |
| Shewanella loihica PV-4 | Shew_1904 | -111 | 3.9 | AAATGTGATGTTCCCCTAAAAG |
| -73 | 4.8 | TATTGTGAACGGATTCAAAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2038 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2256 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella piezotolerans WP3 | swp_2633 | -162 | 4.4 | AAATGTGATGTTTAACTCAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_2358 | -194 | 3.8 | AAATGTGATATTCCCCTAAAAG |
|
Position: -173
Score: 4.3 Sequence: TTTTTTGACATGGCTCAAGTAT
Locus tag: SO2364
|
||||
| SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: -319
Score: 5.1 Sequence: AAGTGTGATTAAAATCACACTT
Locus tag: SO2427
|
||||
| SO2427 | -319 | 5.1 | AAGTGTGATTAAAATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2427 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO2427 | -319 | 5.1 | AAGTGTGATTAAAATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1940 | -318 | 5.7 | TAGTGTGATCTACATCACATAA |
| -274 | 4 | AAATGTTATTTTATTAACAGAG | ||
| Shewanella sp W3-18-1 | Sputw3181_2068 | -318 | 4.6 | GCGTGTGATCTATATCACATAA |
| Shewanella sp ANA-3 | Shewana3_1958 | -320 | 5.2 | AAGTGTGACACACATCACATAT |
| -276 | 4.4 | AAATGTTATTTTCTTAACAGTT | ||
| Shewanella sp MR-4 | Shewmr4_1903 | -319 | 5.6 | AAATGTGATGTGCGTCACATTT |
| -275 | 3.9 | AAATGTTATTTTATTAACAGCT | ||
| Shewanella sp MR-7 | Shewmr7_2075 | -319 | 5.2 | AAGTGTGACGTGTGTCACATTT |
| -275 | 4.3 | AAATGTTATTTTATTAACAGTA | ||
| Shewanella baltica OS155 | Sbal_2044 | -317 | 5.1 | AAGCGTGATCTGTGTCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2416 | -149 | 5 | AAATGTGATGTTGTTCACATGT |
| -4 | 4.1 | ATTCATGAGTTCAGTCACATTA | ||
| Shewanella amazonensis SB2B | Sama_1838 | -324 | 3.8 | TTAATCGATATGGGTCACAGAA |
| -301 | 5.2 | AAGTGTGATGCACGTCACAAAA | ||
| Shewanella loihica PV-4 | Shew_2074 | -308 | 5.1 | TTTTGTGATAATGGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1923 | -306 | 5.5 | AATTGTGATGCGCGTCACAATT |
| -199 | 4.1 | ACTTGTGCTGTTTGTCACAATG | ||
| Shewanella piezotolerans WP3 | swp_2362 | -310 | 4.7 | AAGCGTGACCTGTGTCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_2036 | -316 | 4.6 | TTTCGTGACGCGCGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_2565 | -321 | 4.9 | TTCTGTGACCTGTGTCACAAAA |
|
Position: -194
Score: 4.4 Sequence: TTTGTTGATTGCGATCACAATT
Locus tag: SO2535
|
||||
| SO2535 | -194 | 4.4 | TTTGTTGATTGCGATCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2535 | ||||
| Ortholog function: Predicted glutamine amidotransferase | ||||
| Shewanella oneidensis MR-1 | SO2535 | -194 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1792 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_2233 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp ANA-3 | Shewana3_2322 | -133 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_2145 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_2222 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella baltica OS155 | Sbal_2305 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella denitrificans OS217 | Sden_1765 | -204 | 3.7 | TATGATGATCCTATTCACAAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1870 | -203 | 3.9 | ATTATTGATCTCATTCACAAGA |
| Shewanella amazonensis SB2B | Sama_1869 | -195 | 3.9 | ATAAGCGATCCTGATCACAAGT |
| Shewanella loihica PV-4 | Shew_2107 | -191 | 4.6 | TTATATGACCATAATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_2392 | -196 | 4.4 | TTTTGAGTTCTATCTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1891 | -199 | 4.2 | TTTTGAGGTTTATCTCACAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2000 | -191 | 4.5 | TTTATTGATCATAATCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2603 | -190 | 4.8 | TATATTGATCGATATCACAATT |
|
Position: -72
Score: 4.8 Sequence: AATTGTGATCGCAATCAACAAA
Locus tag: SO2536
|
||||
| SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella oneidensis MR-1 | SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella baltica OS155 | Sbal_2306 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -66 | 3.8 | ACTTGTGAATAGGATCATCATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -67 | 3.8 | TCTTGTGAATGAGATCAATAAT |
| Shewanella amazonensis SB2B | Sama_1870 | -64 | 4.3 | ACTTGTGATCAGGATCGCTTAT |
| Shewanella loihica PV-4 | Shew_2108 | -71 | 4.9 | AATTGTGATTATGGTCATATAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -70 | 4.5 | AATTGTGAGATAGAACTCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA |
| Shewanella piezotolerans WP3 | swp_2312 | -97 | 3.5 | AATTGTGACGTAGACCCGCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -71 | 4.5 | AATTGTGATTATGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -73 | 4.8 | AATTGTGATATCGATCAATATA |
|
Position: -155
Score: 5.1 Sequence: TTATGTGATGATGATCAAAATT
Locus tag: SO2581
|
||||
| SO2581 | -155 | 5.1 | TTATGTGATGATGATCAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD1 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO2581 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1761 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp W3-18-1 | Sputw3181_2264 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp ANA-3 | Shewana3_2386 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-4 | Shewmr4_2177 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-7 | Shewmr7_2254 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella baltica OS155 | Sbal_1864 | -156 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella denitrificans OS217 | Sden_1625 | -189 | 4.1 | TTATGTGATTATGGGCCCAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1733 | -165 | 4.7 | TTATGTGATTATGATCGAAAAT |
| Shewanella amazonensis SB2B | Sama_1934 | -140 | 4.8 | TTATGTGATGATTGTCAAAAAT |
| Shewanella loihica PV-4 | Shew_2188 | -149 | 4.9 | TTGTGTGATGATGTTCAAAATT |
| Shewanella pealeana ATCC 700345 | Spea_2448 | -156 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1832 | -155 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella piezotolerans WP3 | swp_2289 | -153 | 5 | ATATGTGATGATAATCAAAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2523 | -151 | 5 | TTATGTGATGATGATCATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2110 | -153 | 5.1 | TTATGTGATGATGTTCAAAATT |
|
Position: -177
Score: 4.1 Sequence: GTTAGTGATAGCGATCACAAAC
Locus tag: SO2586
|
||||
| SO2586 | -177 | 4.1 | GTTAGTGATAGCGATCACAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2586 | ||||
| Ortholog function: inactive homolog of metal-dependent proteases, putative molecular chaperone | ||||
| Shewanella oneidensis MR-1 | SO2586 | -177 | 4.1 | GTTAGTGATAGCGATCACAAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1756 | -269 | 4.7 | TTAAGTGACTTATATCACATTG |
| Shewanella sp W3-18-1 | Sputw3181_2269 | -269 | 4.7 | TTAAGTGACTTATATCACATTG |
| Shewanella sp ANA-3 | Shewana3_2391 | -176 | 4.2 | GTTAGTGATGGCGATCACAAAC |
| Shewanella sp MR-4 | Shewmr4_2182 | -177 | 4.2 | GTTAGTGATGGCGATCACAAAC |
| Shewanella sp MR-7 | Shewmr7_2259 | -178 | 4.2 | GTTAGTGATGGCGATCACAAAC |
| Shewanella baltica OS155 | Sbal_1859 | -205 | 4.3 | ATCATTGACTTAGATCACATAA |
|
Position: -197
Score: 4 Sequence: GTTTGTGATCGCTATCACTAAC
Locus tag: SO2587
|
||||
| SO2587 | -197 | 4 | GTTTGTGATCGCTATCACTAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemB-1 | ||||
| Ortholog function: porphobilinogen synthase (EC 4.2.1.24) | ||||
| Shewanella oneidensis MR-1 | SO2587 | -197 | 4 | GTTTGTGATCGCTATCACTAAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1755 | -144 | 4.6 | CAATGTGATATAAGTCACTTAA |
| Shewanella sp W3-18-1 | Sputw3181_2270 | -144 | 4.6 | CAATGTGATATAAGTCACTTAA |
| Shewanella sp ANA-3 | Shewana3_2392 | -222 | 4 | GTTTGTGATCGCCATCACTAAC |
| Shewanella sp MR-4 | Shewmr4_2183 | -217 | 4 | GTTTGTGATCGCCATCACTAAC |
| Shewanella sp MR-7 | Shewmr7_2260 | -193 | 4 | GTTTGTGATCGCCATCACTAAC |
| Shewanella baltica OS155 | Sbal_1858 | -168 | 4.4 | TTATGTGATCTAAGTCAATGAT |
|
Position: -63
Score: 3.8 Sequence: TATTTTGATATTGAATAAAATA
Position: -34
Score: 3.8 Sequence: TGATGTGCCAGTGTTCAAATAG
Locus tag: SO2591
|
||||
| SO2591 | -63 | 3.8 | TATTTTGATATTGAATAAAATA | |
| -34 | 3.8 | TGATGTGCCAGTGTTCAAATAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ycbW | ||||
| Ortholog function: probable membrane protein YcbW | ||||
| Shewanella oneidensis MR-1 | SO2591 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.8 | TGATGTGCCAGTGTTCAAATAG | ||
| -2 | 3.7 | TTATGTTATTATTGCCGCAAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2193 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 4 | TTATGTGCGAGTGTTCAAATAG | ||
| -2 | 3.8 | TTATGTTATTAATGCCGCAAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1816 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 3.8 | TTATGTTATTAATGCCGCAAAA | ||
| Shewanella sp ANA-3 | Shewana3_1787 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_1682 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.8 | TGATGTGCCAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_1757 | -63 | 3.8 | TATTTTGATATTGAATAAAATA |
| -34 | 3.7 | TGATGTGCGAGTGTTCAAATAG | ||
| -2 | 4 | TTATGTTATTATTGCCACAAAA | ||
| Shewanella baltica OS155 | Sbal_2438 | -2 | 4.2 | TTATGTTATTAATGCCACAAAA |
| Shewanella denitrificans OS217 | Sden_1731 | -139 | 4.2 | ATTTATGAGTGCGATCAAAATT |
| Shewanella amazonensis SB2B | Sama_1594 | -2 | 3.9 | TTATGTTATTAATGCCACATAC |
| Shewanella loihica PV-4 | Shew_1811 | -94 | 4.6 | TGTTGTAATCTATATCATATTT |
| Shewanella pealeana ATCC 700345 | Spea_1944 | -62 | 4.1 | TATTTTGATATTGATGAAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2355 | -62 | 4.1 | TATTTTGATATTGATGAAATAA |
| Shewanella piezotolerans WP3 | swp_2809 | -239 | 3.8 | TTTAATAATATAGATCATAAAA |
| -143 | 4.1 | TATTTTGATATTGATGAAATTA | ||
| -2 | 4 | ATATGGAATTTCTATCACCTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2474 | -94 | 4.6 | TATTGTTATTCAACTCATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2142 | -52 | 4 | TACTTTGATATTGAACAAAATA |
|
Position: -199
Score: 4.1 Sequence: AAATGTGATCTACACCTAAATG
Locus tag: SO2629
|
||||
| SO2629 | -199 | 4.1 | AAATGTGATCTACACCTAAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | ||||
| Shewanella oneidensis MR-1 | SO2629 | -199 | 4.1 | AAATGTGATCTACACCTAAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_2230 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella sp W3-18-1 | Sputw3181_1779 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella sp ANA-3 | Shewana3_1750 | -209 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella sp MR-4 | Shewmr4_1606 | -208 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella sp MR-7 | Shewmr7_1681 | -208 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella baltica OS155 | Sbal_2475 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2257 | -242 | 4.6 | AATTGTGATCTGTACCTAATTT |
| Shewanella loihica PV-4 | Shew_1563 | -237 | 3.8 | ATTTATGATGTCGGCCAACTAA |
| -217 | 4.1 | AAATGTGATCGATAGCAAAACG | ||
| Shewanella pealeana ATCC 700345 | Spea_2535 | -195 | 4.2 | AAGTGTGATCTGCAGCTAACTA |
| Shewanella piezotolerans WP3 | swp_1868 | -21 | 4.2 | AAGTGTGATCCGCAACTAAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1883 | -275 | 3.9 | AAGTGTGATCTGCGCCAAGTTG |
| Shewanella woodyi ATCC 51908 | Swoo_2702 | -304 | 3.9 | AAGTGTGATCTAAGCCAAGTTG |
|
Position: -184
Score: 4.4 Sequence: TTACATGATGCAGCGCACATTT
Locus tag: SO2727
|
||||
| SO2727 | -184 | 4.4 | TTACATGATGCAGCGCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cctA | ||||
| Ortholog function: cytochrome c3 | ||||
| Shewanella oneidensis MR-1 | SO2727 | -184 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2333 | -183 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1675 | -183 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella sp ANA-3 | Shewana3_2511 | -183 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella sp MR-4 | Shewmr4_2318 | -184 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella sp MR-7 | Shewmr7_2388 | -184 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella baltica OS155 | Sbal_1793 | -184 | 4.4 | TTACATGATGCAGCGCACATTT |
| Shewanella loihica PV-4 | Shew_1724 | -224 | 4.6 | TAGTGTGACGCAGATCATGTTT |
| -174 | 4.7 | ATATTTGATTAAGTGCACATTT | ||
|
Position: -235
Score: 4.7 Sequence: TTAAGTGATCTGCCTCACTTAA
Locus tag: SO2753
|
||||
| SO2753 | -235 | 4.7 | TTAAGTGATCTGCCTCACTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO2753 | -235 | 4.7 | TTAAGTGATCTGCCTCACTTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp W3-18-1 | Sputw3181_2420 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp ANA-3 | Shewana3_2536 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-4 | Shewmr4_2373 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-7 | Shewmr7_2445 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella baltica OS155 | Sbal_1741 | -233 | 4.7 | AAAGGTGATCTATATCACTTAA |
| Shewanella amazonensis SB2B | Sama_2091 | -226 | 4.7 | TTGTGTGATCTTGCGCACGTTA |
| Shewanella loihica PV-4 | Shew_1522 | -276 | 3.5 | ATTTGCGCTTGATTACGCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2569 | -251 | 3.9 | TAGTGTGGGTTTAGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -266 | 3.6 | TATTGCGGGGTTTGTCACGTTT |
| Shewanella piezotolerans WP3 | swp_1825 | -248 | 3.6 | TTGTGAGTCCTTAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1852 | -257 | 3.8 | AAGTGTGATCTTGGTCGGTAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2736 | -259 | 3.7 | TAGTGTGATCTAGGTTGGGTAA |
|
Position: -225
Score: 4.2 Sequence: ATTTAAGACCAATATCACATTT
Locus tag: SO2757
|
||||
| SO2757 | -225 | 4.2 | ATTTAAGACCAATATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2757 | ||||
| Ortholog function: Histidine permease YuiF | ||||
| Shewanella oneidensis MR-1 | SO2757 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1598 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_2424 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp ANA-3 | Shewana3_2542 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-4 | Shewmr4_2377 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-7 | Shewmr7_2449 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella baltica OS155 | Sbal_1737 | -227 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella denitrificans OS217 | Sden_2092 | -208 | 4.3 | ATATGCGAGAGGGATCACAATC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1454 | -191 | 3.5 | TTAAATAATAAGTTTCAAATAT |
| Shewanella amazonensis SB2B | Sama_2095 | -210 | 3.9 | AATTTGGAGGAATATCACACAA |
| Shewanella loihica PV-4 | Shew_1515 | -230 | 4 | ATTTGGGATCATTGTCACTTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1682 | -225 | 3.9 | ATTTGATATCAATATCACTTTT |
| Shewanella piezotolerans WP3 | swp_1820 | -77 | 4.1 | ATTTGAGAGCAATATCACTTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1847 | -226 | 4.5 | ATTTGGGATCAATATCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2742 | -155 | 4 | TTTAGTGCTGTTATTTACACTT |
|
Position: -82
Score: 4.1 Sequence: AAACGCGAACTAACTCGCATTT
Locus tag: SO2791
|
||||
| SO2791 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase (EC 3.5.4.5) | ||||
| Shewanella oneidensis MR-1 | SO2791 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1568 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_2531 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp ANA-3 | Shewana3_2573 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-4 | Shewmr4_2411 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-7 | Shewmr7_2481 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella baltica OS155 | Sbal_1694 | -157 | 3.8 | ATTCGTGAATAGACTCACTCTA |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1637 | -44 | 3.8 | AAATTTTATTTTTATCCAATTT |
| Shewanella amazonensis SB2B | Sama_1974 | -82 | 4 | AAATGGGATTAGACTCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1783 | -81 | 3.9 | AACTGAGATCTTCATCTCATTC |
| Shewanella piezotolerans WP3 | swp_3037 | -82 | 4.1 | AAGTGCGATCTCTGTCGCATTC |
| Shewanella sediminis HAW-EB3 | Ssed_2618 | -82 | 3.9 | AAATGGGAGCTGGATCTCATCA |
| Shewanella woodyi ATCC 51908 | Swoo_2048 | -82 | 3.9 | AAATGGGAGAAAGATCCCATTA |
|
Position: -70
Score: 4.5 Sequence: TTATGAGAGCAGAATCACATTT
Locus tag: SO2797
|
||||
| SO2797 | -70 | 4.5 | TTATGAGAGCAGAATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2797 | ||||
| Ortholog function: glutaredoxin | ||||
| Shewanella oneidensis MR-1 | SO2797 | -70 | 4.5 | TTATGAGAGCAGAATCACATTT |
| Shewanella sp ANA-3 | Shewana3_2579 | -102 | 4.7 | TTATGCGAGCGGAATCACATTT |
| Shewanella sp MR-4 | Shewmr4_2417 | -101 | 4.7 | TTATGCGAGCGGAATCACATTT |
| Shewanella sp MR-7 | Shewmr7_2487 | -88 | 4.8 | TTATGCGAGCGAAATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1830 | -53 | 3.8 | TTCTGTGACATGGGTTACACTC |
|
Position: -95
Score: 4.3 Sequence: TCTTGTGAATTGAGTCACATAG
Locus tag: SO2806
|
||||
| SO2806 | -95 | 4.3 | TCTTGTGAATTGAGTCACATAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2806 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2806 | -95 | 4.3 | TCTTGTGAATTGAGTCACATAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1554 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp W3-18-1 | Sputw3181_2545 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp ANA-3 | Shewana3_2588 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp MR-4 | Shewmr4_2426 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella sp MR-7 | Shewmr7_2496 | -95 | 4 | TCTTGTGAATTGAGTCACAGAG |
| Shewanella baltica OS155 | Sbal_1679 | -94 | 4.2 | ATCTGTGAATTAAGTCACACAG |
| Shewanella denitrificans OS217 | Sden_1453 | -35 | 3.9 | ATATTTTATGCCGTTCACTCAT |
| Shewanella amazonensis SB2B | Sama_1287 | -85 | 4 | AATTGTGAAGCCAGTCACGGTG |
| Shewanella pealeana ATCC 700345 | Spea_1483 | -84 | 4.4 | AATTGTGAATAACGTCACACAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1567 | -84 | 4.7 | AATTGTGAACAACATCACACAG |
| Shewanella piezotolerans WP3 | swp_1689 | 27 | 4.3 | AACTGTGAAAGGTATCACACAC |
| Shewanella sediminis HAW-EB3 | Ssed_2877 | -82 | 4.5 | TAATGTGAATGGCGTCACACAG |
| Shewanella woodyi ATCC 51908 | Swoo_1771 | -81 | 4.6 | TATTGTGAAAGTCATCACACAG |
|
Position: -105
Score: 4.8 Sequence: TATTGTGAGTAAGTTCGCAAAT
Locus tag: SO2858
|
||||
| SO2858 | -105 | 4.8 | TATTGTGAGTAAGTTCGCAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2858 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2858 | -105 | 4.8 | TATTGTGAGTAAGTTCGCAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2359 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp W3-18-1 | Sputw3181_1650 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp ANA-3 | Shewana3_1574 | -105 | 4 | GGATGTGAGCCGCTTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_1513 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella sp MR-7 | Shewmr7_1580 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella baltica OS155 | Sbal_2639 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1546 | -237 | 4.9 | TTTTGTGATGCAGATCTCAATC |
|
Position: -157
Score: 4.5 Sequence: ATTTGTGATGTGAATCATTGTT
Locus tag: SO2880
|
||||
| SO2880 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: Probable monothiol glutaredoxin ydhD | ||||
| Shewanella oneidensis MR-1 | SO2880 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1688 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp W3-18-1 | Sputw3181_2337 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp ANA-3 | Shewana3_1640 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp MR-4 | Shewmr4_1573 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella sp MR-7 | Shewmr7_1648 | -157 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella baltica OS155 | Sbal_1783 | -156 | 4.5 | ATTTGTGATGTGAATCATTGTT |
| Shewanella denitrificans OS217 | Sden_1640 | -137 | 4.5 | TTTTGTGATGTGCATCATTGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1748 | -155 | 4.5 | TTTTGTGATGTGAATCATTGTT |
| Shewanella amazonensis SB2B | Sama_1919 | -173 | 4.2 | ATCTGTGATGTGAATCATTCTT |
| Shewanella loihica PV-4 | Shew_1835 | -164 | 4.2 | AGTTGTGATGTGAATCATTGTT |
| Shewanella pealeana ATCC 700345 | Spea_1964 | -154 | 3.6 | ACTTGTGAAGTGTATCATTGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2335 | -154 | 3.9 | AGTTGTGAAGTGTATCATTGTT |
| Shewanella piezotolerans WP3 | swp_2753 | -153 | 3.6 | ACTTGTGAAGTGTATCATTGTT |
|
Position: -91
Score: 4.3 Sequence: AACAATGATTCACATCACAAAT
Locus tag: SO2881
|
||||
| SO2881 | -91 | 4.3 | AACAATGATTCACATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodB | ||||
| Ortholog function: superoxide dismutase [Fe] (EC 1.15.1.1) | ||||
| Shewanella oneidensis MR-1 | SO2881 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1687 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2338 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp ANA-3 | Shewana3_1639 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp MR-4 | Shewmr4_1572 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella sp MR-7 | Shewmr7_1647 | -91 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella baltica OS155 | Sbal_1782 | -90 | 4.3 | AACAATGATTCACATCACAAAT |
| Shewanella denitrificans OS217 | Sden_1639 | -106 | 4.3 | AACAATGATGCACATCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1747 | -102 | 4.2 | AACAATGATTCACATCACAAAA |
| Shewanella amazonensis SB2B | Sama_1920 | -91 | 4.2 | AAGAATGATTCACATCACAGAT |
| Shewanella loihica PV-4 | Shew_1834 | -89 | 3.8 | AACAATGATTCACATCACAACT |
| Shewanella halifaxensis HAW-EB4 | Shal_2336 | -93 | 3.7 | AACAATGATACACTTCACAACT |
|
Position: -101
Score: 3.8 Sequence: GGAGGTGATCTTCGTCACAGTT
Locus tag: SO2893
|
||||
| SO2893 | -101 | 3.8 | GGAGGTGATCTTCGTCACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yceI | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1651 | -70 | 3.8 | TAAATGGATGTAAATCACGATT |
| Shewanella sp W3-18-1 | Sputw3181_2375 | -70 | 3.8 | TAAATGGATGTAAATCACGATT |
| Shewanella sp ANA-3 | Shewana3_1628 | -102 | 4.6 | TTAGGTGATCTTTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_1561 | -103 | 4.8 | TTAGGTGATCTTTGTCACAAAT |
| Shewanella sp MR-7 | Shewmr7_1636 | -103 | 4.8 | TTAGGTGATCTTTGTCACAAAT |
| Shewanella baltica OS155 | Sbal_1772 | -105 | 4.7 | TTAGGTGATGTGGGTCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_2476 | -166 | 3.8 | TTACGTGCTGAATTGCAAAATT |
| -69 | 3.8 | AATTGTTACGCATCTTACGCTA | ||
| Shewanella piezotolerans WP3 | swp_3020 | -42 | 3.8 | TACATTGATATCTATCACTATT |
|
Position: -131
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: SO3089
|
||||
| SO3089 | -131 | 3.9 | AAGTTAGAATCAGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO3089 | -131 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2460 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_1548 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp ANA-3 | Shewana3_1460 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-4 | Shewmr4_1407 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-7 | Shewmr7_1472 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella baltica OS155 | Sbal_2761 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella denitrificans OS217 | Sden_1529 | -109 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -104 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella amazonensis SB2B | Sama_2168 | -112 | 3.6 | AAGTTAGAATCGGGTCACACTT |
| Shewanella loihica PV-4 | Shew_2426 | -134 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_2599 | -116 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2671 | -119 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3140 | -122 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1628 | -151 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3027 | -138 | 4.1 | AAGTTAGAATCAGATCACATTT |
|
Position: -165
Score: 4.6 Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: SO3090
|
||||
| SO3090 | -165 | 4.6 | AAGTGTGATCTGATTCTAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3090 | ||||
| Ortholog function: MoxR-like ATPase in aerotolerance operon | ||||
| Shewanella oneidensis MR-1 | SO3090 | -165 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2461 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp W3-18-1 | Sputw3181_1547 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp ANA-3 | Shewana3_1459 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp MR-4 | Shewmr4_1406 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sp MR-7 | Shewmr7_1471 | -160 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella baltica OS155 | Sbal_2762 | -148 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella denitrificans OS217 | Sden_1528 | -157 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2678 | -167 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella amazonensis SB2B | Sama_2169 | -137 | 4.2 | AAGTGTGACCCGATTCTAACTT |
| Shewanella loihica PV-4 | Shew_2427 | -296 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella pealeana ATCC 700345 | Spea_2600 | -306 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2672 | -319 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella piezotolerans WP3 | swp_3141 | -97 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1627 | -316 | 4.6 | AAGTGTGATCTGATTCTAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3028 | -306 | 4.8 | AAATGTGATCTGATTCTAACTT |
|
Position: -166
Score: 4.5 Sequence: AATAGTGATAAAGATCGCGTTT
Locus tag: SO3119
|
||||
| SO3119 | -166 | 4.5 | AATAGTGATAAAGATCGCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3119 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3119 | -166 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2489 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1519 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp ANA-3 | Shewana3_1429 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-4 | Shewmr4_1376 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-7 | Shewmr7_1441 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella baltica OS155 | Sbal_2792 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella amazonensis SB2B | Sama_2198 | -151 | 4.4 | AATAGTGATTAAGCTCGCGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1466 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1549 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella piezotolerans WP3 | swp_1671 | -220 | 3.8 | GAAAGTGACTTAAATCGCGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2897 | -173 | 4.7 | TAAAGTGATTTAGATCGCGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1750 | -148 | 4.4 | TTAAGTGACTTAGATCGCGTTT |
|
Position: -186
Score: 4.3 Sequence: AAACGCGATCTTTATCACTATT
Locus tag: SO3120
|
||||
| SO3120 | -186 | 4.3 | AAACGCGATCTTTATCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3120 | ||||
| Ortholog function: oxidoreductase, Gfo/Idh/MocA family | ||||
| Shewanella oneidensis MR-1 | SO3120 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella putrefaciens CN-32 | Sputcn32_2490 | -173 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_1518 | -173 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp ANA-3 | Shewana3_1428 | -187 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp MR-4 | Shewmr4_1375 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella sp MR-7 | Shewmr7_1440 | -186 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella baltica OS155 | Sbal_2793 | -202 | 4.3 | AAACGCGATCTTTATCACTATT |
| Shewanella pealeana ATCC 700345 | Spea_1465 | -158 | 4 | AAACGCGATATAAATCACTTTC |
| Shewanella halifaxensis HAW-EB4 | Shal_1548 | -207 | 4 | AAACGCGATATAAATCACTTTC |
| Shewanella piezotolerans WP3 | swp_1670 | -185 | 3.7 | AAACGCGATTTAAGTCACTTTC |
| Shewanella woodyi ATCC 51908 | Swoo_1749 | -214 | 4.2 | AAACGCGATCTAAGTCACTTAA |
|
Position: -203
Score: 4.2 Sequence: TAGTGTGACTAGGGTCTCAGTA
Locus tag: SO3286
|
||||
| SO3286 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA | ||||
| Shewanella oneidensis MR-1 | SO3286 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp ANA-3 | Shewana3_1241 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-4 | Shewmr4_1239 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-7 | Shewmr7_1310 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella baltica OS155 | Sbal_2979 | -207 | 4.4 | TAGTGTGACTCGCGTCTCAATA |
| Shewanella denitrificans OS217 | Sden_1274 | -157 | 4.1 | TAAATTGATCTAAATCAATTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -240 | 4.2 | AAATCTAATGCTGGTCACATAA |
| Shewanella loihica PV-4 | Shew_1302 | -206 | 4.7 | TTTTGTGAGCCGCCTCTCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -235 | 4 | ATTCGGGATGGGTGTCACAAAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -234 | 4.1 | ATTTGGGATGAGTATCACGGAA |
| Shewanella piezotolerans WP3 | swp_1469 | -231 | 4.2 | AGGTGAGACGGTGATCACAATA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -203 | 4 | TAGTGTGAAGTTCGTCGTAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -204 | 3.8 | TTTTGTGAGATCGGTCGGAAAG |
|
Position: -257
Score: 4.1 Sequence: AGATGTGATCGGTTGCGCGAAT
Locus tag: SO3395
|
||||
| SO3395 | -257 | 4.1 | AGATGTGATCGGTTGCGCGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3395 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3395 | -257 | 4.1 | AGATGTGATCGGTTGCGCGAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2722 | -259 | 3.7 | AAACGTGATCAGTTACCCGTAA |
| Shewanella sp W3-18-1 | Sputw3181_1290 | -259 | 3.7 | AAACGTGATCAGTTACCCGTAA |
| Shewanella sp ANA-3 | Shewana3_1157 | -261 | 4.2 | AGTTGTGATCTTTGGCGCGTAT |
| Shewanella sp MR-4 | Shewmr4_1156 | -261 | 4.2 | AGTTGTGATCTTTGGCGCGTAT |
| Shewanella sp MR-7 | Shewmr7_1227 | -260 | 4.2 | ACTTGTGATCTTTAGCGCGTAT |
|
Position: -142
Score: 4.7 Sequence: TTCTTTGATAGGTCTCACATTT
Locus tag: SO3403
|
||||
| SO3403 | -142 | 4.7 | TTCTTTGATAGGTCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-1 | ||||
| Ortholog function: ribosomal subunit interface protein | ||||
| Shewanella oneidensis MR-1 | SO3403 | -142 | 4.7 | TTCTTTGATAGGTCTCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2725 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1287 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp ANA-3 | Shewana3_1151 | -142 | 4.6 | TTCTTTGATAAGTCTCACATTT |
| Shewanella sp MR-4 | Shewmr4_1150 | -142 | 4.6 | TTCTTTGATAAATCTCACATTT |
| Shewanella sp MR-7 | Shewmr7_1221 | -142 | 5 | TTTTTTGATAAATCTCACATTT |
| Shewanella baltica OS155 | Sbal_1239 | -222 | 4.2 | TTTTGTGATTGATTTATTATTA |
| -144 | 4.3 | CTTCTTGATGGCGGTCACATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1258 | -319 | 3.9 | AAGAGTGATAAAAATCAAGCTA |
| -230 | 3.8 | TATCCTGATGAATGCCACAATT | ||
| Shewanella piezotolerans WP3 | swp_3408 | -177 | 4.1 | TGATGTGATAAAAAGCACTCAT |
|
Position: -298
Score: 3.8 Sequence: ATTTGTGCACAGCATCAACAAA
Locus tag: SO3406
|
||||
| SO3406 | -298 | 3.8 | ATTTGTGCACAGCATCAACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3406 | ||||
| Ortholog function: FIG024006: iron uptake protein | ||||
| Shewanella oneidensis MR-1 | SO3406 | -298 | 3.8 | ATTTGTGCACAGCATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_1148 | -278 | 4.8 | ATTTGTGACAAATTGCACATTA |
| -205 | 4.1 | ATTCGTTAGGGATCTCACAGAT | ||
| Shewanella sp MR-7 | Shewmr7_1219 | -278 | 4.8 | ATTTGTGACAAATTGCACATTA |
| -205 | 4.1 | ATTCGTTAGGGAACTCACAGAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3307 | -141 | 4.1 | ATATGAGATGCAGCTCTCATCT |
|
Position: -244
Score: 4.2 Sequence: AAACGAGAGTTAAATCACACTT
Locus tag: SO3421
|
||||
| SO3421 | -244 | 4.2 | AAACGAGAGTTAAATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3421 | ||||
| Ortholog function: b-type cytochrome, putative | ||||
| Shewanella oneidensis MR-1 | SO3421 | -244 | 4.2 | AAACGAGAGTTAAATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2739 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_1273 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp ANA-3 | Shewana3_1134 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-4 | Shewmr4_1133 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-7 | Shewmr7_1204 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella baltica OS155 | Sbal_1222 | -244 | 5 | AAACGAGATCTAGATCACATTT |
| Shewanella denitrificans OS217 | Sden_2745 | -291 | 4.7 | AAGCGTGATCAAAGTCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2911 | -383 | 5.2 | AATAGTGATCTGCATCACACTT |
| Shewanella amazonensis SB2B | Sama_0900 | -234 | 4.2 | AGTCGTGAGTAAAATCACGTTT |
| Shewanella loihica PV-4 | Shew_1074 | -208 | 4.9 | AAACGTGATCTAGATCAACTTT |
| Shewanella pealeana ATCC 700345 | Spea_1061 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1109 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella piezotolerans WP3 | swp_3756 | -366 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1170 | -236 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1265 | -234 | 4.9 | AGTCGTGATCTTGATCACGTTT |
|
Position: -78
Score: 4.7 Sequence: AAGTGTGATTTAACTCTCGTTT
Locus tag: SO3422
|
||||
| SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-2 | ||||
| Ortholog function: Ribosome hibernation protein YfiA | ||||
| Shewanella oneidensis MR-1 | SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2740 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1272 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1133 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1132 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_1203 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella baltica OS155 | Sbal_1221 | -77 | 5.2 | AAATGTGATCTAGATCTCGTTT |
| Shewanella denitrificans OS217 | Sden_2746 | -77 | 4.8 | AAGTGTGACTTTGATCACGCTT |
| -38 | 4.1 | TAATCTGAAGTTAAGCACATAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2912 | -77 | 5 | AAGTGTGATGCAGATCACTATT |
| Shewanella amazonensis SB2B | Sama_0899 | -78 | 4.3 | AAACGTGATTTTACTCACGACT |
| Shewanella loihica PV-4 | Shew_1073 | -76 | 4.6 | AAAGTTGATCTAGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1060 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA |
| -58 | 3.8 | TAATGTGATTGGACTATTGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella piezotolerans WP3 | swp_3757 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella sediminis HAW-EB3 | Ssed_1169 | -222 | 3.8 | TTTTGAGAGGCAAATAAAAAAA |
| -76 | 4.6 | AAACGTGATTTAGATCACGACT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1264 | -76 | 4.5 | AAACGTGATCAAGATCACGACT |
|
Position: -49
Score: 4.5 Sequence: TTTTTTGAGATGAATCACCTAA
Locus tag: SO3534
|
||||
| SO3534 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mviN | ||||
| Ortholog function: proposed peptidoglycan lipid II flippase MurJ | ||||
| Shewanella oneidensis MR-1 | SO3534 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1057 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp W3-18-1 | Sputw3181_3108 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp ANA-3 | Shewana3_3138 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-4 | Shewmr4_2959 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella sp MR-7 | Shewmr7_3041 | -49 | 4.5 | TTTTTTGAGATGAATCACCTAA |
| Shewanella baltica OS155 | Sbal_1052 | -49 | 4.6 | TTTTTTGAGATGTATCACCTAA |
| Shewanella amazonensis SB2B | Sama_0922 | -138 | 3.9 | TATTGTTACTGGCAGCAAACAA |
|
Position: -225
Score: 4.5 Sequence: TTAGGTGATTCATCTCAAAAAA
Locus tag: SO3537
|
||||
| SO3537 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rpsT | ||||
| Ortholog function: SSU ribosomal protein S20p | ||||
| Shewanella oneidensis MR-1 | SO3537 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1056 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA |
| Shewanella sp W3-18-1 | Sputw3181_3109 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA |
| Shewanella sp MR-4 | Shewmr4_2960 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA |
| Shewanella sp MR-7 | Shewmr7_3042 | -225 | 4.5 | TTAGGTGATTCATCTCAAAAAA |
| Shewanella baltica OS155 | Sbal_1051 | -225 | 4.5 | TTAGGTGATACATCTCAAAAAA |
|
Position: -95
Score: 4.2 Sequence: AATTTGGATGCAGAACACATTT
Locus tag: SO3542
|
||||
| SO3542 | -95 | 4.2 | AATTTGGATGCAGAACACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phk | ||||
| Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) | ||||
| Shewanella oneidensis MR-1 | SO3542 | -95 | 4.2 | AATTTGGATGCAGAACACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1051 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3114 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_3145 | -95 | 4 | AATTTGGATGCAGGGCACATTT |
| Shewanella sp MR-4 | Shewmr4_2965 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella sp MR-7 | Shewmr7_3047 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella baltica OS155 | Sbal_1046 | -235 | 4.4 | TCATGTGATCAAGCTCGCGTTT |
| -96 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella denitrificans OS217 | Sden_2731 | -233 | 5 | CTTAGTGATCCAGTTCACATTA |
| -94 | 3.7 | AAGTTAGATCGGGGACACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2898 | -233 | 4.5 | ACAAGTGATATCCATCACACTT |
| -95 | 3.8 | AAATTAGATAAAGGCCACATTA | ||
| Shewanella amazonensis SB2B | Sama_0915 | -240 | 4.1 | ACTCGTGATCAAGCTCACGGTT |
| -99 | 4.1 | AATTTGGATGTGGGGCACATTT | ||
| Shewanella loihica PV-4 | Shew_1091 | -238 | 4.6 | CCATGTGATACAGATCACAGTT |
| -97 | 4 | AAATAAGATATTGAACACATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_1076 | -235 | 3.9 | CTGAGCGATATAGATCACAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1124 | -56 | 4.3 | TATAGTGAGTTATATAAAATTT |
| Shewanella piezotolerans WP3 | swp_3738 | -237 | 4.5 | CTGAGTGATACAGATCACACAT |
| -96 | 3.8 | AAATAAGATACAGGACACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1186 | -238 | 4.4 | CCATGTGACGCAGATCACAGTT |
| -97 | 4.2 | AAATAAGATGTAGAACACATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1282 | -238 | 4.4 | TCGCGTGATCACGATCACACTT |
| -97 | 3.8 | AAACAAGATATAGAACACATTT | ||
|
Position: -152
Score: 4.1 Sequence: TTGTGTGATCATAGTTGCAAAA
Locus tag: SO3552
|
||||
| SO3552 | -152 | 4.1 | TTGTGTGATCATAGTTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3552 | ||||
| Ortholog function: Von Willebrand factor type A domain protein | ||||
| Shewanella oneidensis MR-1 | SO3552 | -152 | 4.1 | TTGTGTGATCATAGTTGCAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1043 | -143 | 4 | CTGTGTGATCATGATTGCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3122 | -143 | 4 | CTGTGTGATCATGATTGCAAAT |
| Shewanella sp ANA-3 | Shewana3_3153 | -165 | 4.1 | TTGTGTGATCATAGTTGCAAAA |
| Shewanella sp MR-4 | Shewmr4_2973 | -165 | 4.4 | TTGTGTGATCATAGTTACAAAA |
| Shewanella sp MR-7 | Shewmr7_3055 | -165 | 4.4 | TTGTGTGATCATAGTTACAAAA |
| Shewanella baltica OS155 | Sbal_1038 | -126 | 3.8 | CAGTGTGATCTTGTCAGCAAAA |
|
Position: -70
Score: 3.9 Sequence: TTTTGCAACTATGATCACACAA
Locus tag: SO3553
|
||||
| SO3553 | -70 | 3.9 | TTTTGCAACTATGATCACACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3553 | ||||
| Ortholog function: putative sulfate permease | ||||
| Shewanella oneidensis MR-1 | SO3553 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella oneidensis MR-1 | SO3553 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella oneidensis MR-1 | SO3553 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1042 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1042 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1042 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3123 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3123 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3123 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp ANA-3 | Shewana3_3154 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp ANA-3 | Shewana3_3154 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp ANA-3 | Shewana3_3154 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2974 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2974 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2974 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3056 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3056 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3056 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella baltica OS155 | Sbal_1037 | -139 | 3.8 | TGATATGAAATTGTTCGCAGTT |
| -95 | 4.1 | TTTCGTTATATACTTAACAGAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3674 | -116 | 4.5 | TAATGTGATGATAATTATATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3674 | -116 | 4.5 | TAATGTGATGATAATTATATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3674 | -116 | 4.5 | TAATGTGATGATAATTATATTA |
| Shewanella amazonensis SB2B | Sama_1067 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella amazonensis SB2B | Sama_1067 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella amazonensis SB2B | Sama_1067 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella sediminis HAW-EB3 | Ssed_1334 | -233 | 4.1 | GTAAGTGCTACGCATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1334 | -233 | 4.1 | GTAAGTGCTACGCATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1334 | -233 | 4.1 | GTAAGTGCTACGCATCACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3320 | -288 | 3.7 | TCCAGCGACTTAGATCACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3320 | -288 | 3.7 | TCCAGCGACTTAGATCACATTT |
|
Position: -161
Score: 3.8 Sequence: TAGCTTGATCAAAAACACAGTT
Locus tag: SO3613
|
||||
| SO3613 | -161 | 3.8 | TAGCTTGATCAAAAACACAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purT | ||||
| Ortholog function: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) | ||||
| Shewanella oneidensis MR-1 | SO3613 | -161 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1001 | -119 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella sp W3-18-1 | Sputw3181_3164 | -119 | 3.8 | TAGCTTGATCAAAAACACAGTT |
| Shewanella sp ANA-3 | Shewana3_3197 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella sp MR-4 | Shewmr4_3020 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella sp MR-7 | Shewmr7_3101 | -121 | 3.9 | TAGCTTGATCGAAAACACAGTT |
| Shewanella pealeana ATCC 700345 | Spea_0871 | -176 | 4.4 | AAGAGTGATCTCGCCCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0924 | -169 | 4.5 | AGTAGTGATCTCGTGCACACAT |
| Shewanella piezotolerans WP3 | swp_4077 | -147 | 4.1 | CAGCGTGATCTGCCGCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_0973 | -160 | 4.6 | TAAAGTGATCCACTACACACTT |
|
Position: -76
Score: 3.8 Sequence: TACTGTTATAAAATACACACTA
Locus tag: SO3680
|
||||
| SO3680 | -76 | 3.8 | TACTGTTATAAAATACACACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shewana3_3248 | ||||
| Ortholog function: UspA domain-containing protein | ||||
| Shewanella oneidensis MR-1 | SO3680 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT |
|
Position: -109
Score: 3.8 Sequence: TTGCGTGATTTTGTGCAAGCAT
Locus tag: SO3682
|
||||
| SO3682 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3682 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3682 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2981 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp W3-18-1 | Sputw3181_0966 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp MR-4 | Shewmr4_0873 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella sp MR-7 | Shewmr7_3149 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella baltica OS155 | Sbal_3331 | -76 | 3.7 | ATTTTTGAGCAATATCACGGCT |
| Shewanella amazonensis SB2B | Sama_2854 | -78 | 4 | AAACTTGATCTGGATCACGAGT |
| Shewanella loihica PV-4 | Shew_3102 | -84 | 4.2 | AAATGTGATCTGGATCAAGTGG |
| Shewanella pealeana ATCC 700345 | Spea_3356 | -102 | 4.7 | AATTGTGAGCTAGATCAAACTC |
| Shewanella halifaxensis HAW-EB4 | Shal_3428 | -90 | 4.8 | AATTGTGACTGAGATCAAATTC |
| Shewanella piezotolerans WP3 | swp_1054 | -79 | 4.3 | TTTTGTGAGCAAGATCAACTTC |
| Shewanella sediminis HAW-EB3 | Ssed_3715 | -111 | 4.2 | CAGTGTGATCTCGATCAACTTC |
|
Position: -183
Score: 4 Sequence: AAGTGTTACACCTATCCCATAT
Locus tag: SO3699.1
|
||||
| SO3699.1 | -183 | 4 | AAGTGTTACACCTATCCCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3699.1 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3699.1 | -183 | 4 | AAGTGTTACACCTATCCCATAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2996 | -183 | 4 | AAGTGTTACGCCTATCCCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_0951 | -185 | 4 | AAGTGTTACGCCTATCCCAAAT |
| Shewanella sp ANA-3 | Shewana3_3266 | -176 | 4.3 | AAATGTTACGCCTATCCCATAT |
| Shewanella sp MR-4 | Shewmr4_0857 | -166 | 4.3 | AAGTGTTATGCCTATCCCATAT |
| Shewanella sp MR-7 | Shewmr7_3165 | -166 | 4.3 | AAATGTTACGCCTATCCCATAT |
|
Position: -146
Score: 4.4 Sequence: TATAGTGTTGTCCGTCACATTT
Locus tag: SO3774
|
||||
| SO3774 | -146 | 4.4 | TATAGTGTTGTCCGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3774 | ||||
| Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | ||||
| Shewanella oneidensis MR-1 | SO3774 | -146 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3099 | -128 | 3.8 | GATAGTGTTGTCCGTCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_0845 | -128 | 3.8 | GATAGTGTTGTCCGTCACATTT |
| Shewanella sp ANA-3 | Shewana3_0819 | -131 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella sp MR-4 | Shewmr4_3122 | -132 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella sp MR-7 | Shewmr7_0850 | -131 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella baltica OS155 | Sbal_3458 | -128 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0568 | -172 | 3.8 | TTCAGTGAACAAAATCAAACAA |
| -131 | 4.1 | TTGAGTGTCCAAGTTCACATTT | ||
| Shewanella loihica PV-4 | Shew_0615 | -146 | 3.9 | AAGAGTGTCCCTCGTCACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3490 | -127 | 3.9 | ATTATTGCCACTCATCACATTT |
| Shewanella piezotolerans WP3 | swp_0809 | -137 | 3.9 | AAAGGTGTCGCTCGTCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3846 | -162 | 4 | AATGGTGTCCCTCGTCACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0714 | -176 | 3.9 | AAGAGTGTCCCTCGTCACATTT |
|
Position: -137
Score: 4.2 Sequence: CAATGTGAGCGGCTTCAAAATG
Locus tag: SO3776
|
||||
| SO3776 | -137 | 4.2 | CAATGTGAGCGGCTTCAAAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3776 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3776 | -137 | 4.2 | CAATGTGAGCGGCTTCAAAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_3102 | -147 | 4.2 | CAATGTGAGCGGCTTCAAATTG |
| Shewanella sp W3-18-1 | Sputw3181_0842 | -147 | 4.2 | CAATGTGAGCGGCTTCAAATTG |
| Shewanella sp ANA-3 | Shewana3_0817 | -141 | 4.2 | CAATGTGAGCGGCTTCAAATTG |
| Shewanella sp MR-4 | Shewmr4_3123 | -141 | 4.2 | CAATGTGAGCGGCTTCAAATTG |
| Shewanella sp MR-7 | Shewmr7_0844 | -30 | 3.8 | TAACGTGTTCTACAACAAACTA |
| Shewanella baltica OS155 | Sbal_3459 | -146 | 3.8 | GAGTGCGAGCTAGCTCAAATTT |
|
Position: -191
Score: 4.4 Sequence: TTTATTGATCAGCATCGCATTT
Locus tag: SO3780
|
||||
| SO3780 | -191 | 4.4 | TTTATTGATCAGCATCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydD | ||||
| Ortholog function: Transport ATP-binding protein CydD | ||||
| Shewanella oneidensis MR-1 | SO3780 | -191 | 4.4 | TTTATTGATCAGCATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3106 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0838 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_0812 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_3127 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0840 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella baltica OS155 | Sbal_3463 | -170 | 4.3 | TTTTGTGAGTCTGCTAGCAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3213 | -214 | 4.2 | TATTGTGTTGCAATTAACAATG |
| -104 | 5 | AAATGTGAATCAGATAACATTT | ||
| Shewanella amazonensis SB2B | Sama_2679 | -137 | 4.2 | TTTTTTGATCCAGCGCAAATTC |
| -118 | 4.2 | TTCTGTGAATCCCCTAACAAAT | ||
| Shewanella loihica PV-4 | Shew_0613 | -129 | 4.5 | TTTTTTGATCTAGCTCAATTTT |
| -110 | 4.8 | TTTTGTGAGCCTAATAACAATT | ||
| Shewanella pealeana ATCC 700345 | Spea_3494 | -185 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -166 | 4.4 | TTTTGTGAGTCCGATAGCAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3589 | -233 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -214 | 4.9 | TTTTGTGAGTCCGATAACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3849 | -139 | 4.1 | AAAATTGATCTAGCTCAATTTT |
| -120 | 4.7 | TTTTGTGAATCCGTTAACAATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0710 | -149 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -130 | 4.7 | TTTTGTGAATCTCTTAACATTT | ||
|
Position: -53
Score: 4.5 Sequence: TTTTGTTATACTCGTCACCTTT
Locus tag: SO3797
|
||||
| SO3797 | -53 | 4.5 | TTTTGTTATACTCGTCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3797 | ||||
| Ortholog function: probable collagenase (EC 3.4.24.3) | ||||
| Shewanella oneidensis MR-1 | SO3797 | -53 | 4.5 | TTTTGTTATACTCGTCACCTTT |
| Shewanella sp ANA-3 | Shewana3_0800 | -53 | 4.5 | TTTTGTTATACTCGTCACCTTT |
| Shewanella sp MR-4 | Shewmr4_3138 | -53 | 4.5 | TTTTGTTATACTCGTCACCTTT |
| Shewanella sp MR-7 | Shewmr7_0828 | -53 | 4.5 | TTTTGTTATACTCGTCACCTTT |
| Shewanella loihica PV-4 | Shew_0818 | -26 | 3.7 | ATCTGTGATCTGATTCGAGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_0816 | -36 | 4.3 | AAATGGGATGTAAATAACGTAA |
|
Position: -66
Score: 4 Sequence: TTACGTGACCTATAGCACGTCT
Locus tag: SO3855
|
||||
| SO3855 | -66 | 4 | TTACGTGACCTATAGCACGTCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sfcA | ||||
| Ortholog function: NAD-dependent malic enzyme (EC 1.1.1.38) | ||||
| Shewanella oneidensis MR-1 | SO3855 | -66 | 4 | TTACGTGACCTATAGCACGTCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0784 | -54 | 4.4 | TTACGTGACTTAAAGCACGTAT |
| Shewanella sp W3-18-1 | Sputw3181_3391 | -54 | 4.4 | TTACGTGACTTAAAGCACGTAT |
| Shewanella sp ANA-3 | Shewana3_0750 | -65 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella sp MR-4 | Shewmr4_3188 | -66 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella sp MR-7 | Shewmr7_0778 | -66 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella baltica OS155 | Sbal_0676 | -55 | 4.4 | TTACGTGACTTACAGCACGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0833 | -122 | 5 | TAATGTGATTTTACTCACTTAA |
| Shewanella sediminis HAW-EB3 | Ssed_3518 | -87 | 3.7 | AAACGCAACAAAGATCACACTT |
|
Position: -257
Score: 3.6 Sequence: AATACTGATCCTGATCAATAAA
Position: -196
Score: 4.6 Sequence: CCATGTGATCTGGTTCAAATTT
Locus tag: SO3890
|
||||
| SO3890 | -257 | 3.6 | AATACTGATCCTGATCAATAAA | |
| -196 | 4.6 | CCATGTGATCTGGTTCAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3890 | ||||
| Ortholog function: methyl-accepting chemotaxis protein | ||||
| Shewanella oneidensis MR-1 | SO3890 | -196 | 4.6 | CCATGTGATCTGGTTCAAATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0776 | -185 | 4.4 | TTGTGTGACACGAATCAAGTTT |
| Shewanella sp W3-18-1 | Sputw3181_3399 | -185 | 4.4 | TTGTGTGACACGAATCAAGTTT |
| Shewanella sp ANA-3 | Shewana3_0739 | -181 | 4.9 | CTGTGTGATGTGGTTCAAATTT |
| Shewanella sp MR-4 | Shewmr4_3223 | -198 | 4.3 | CCCTGTGATCTAGCTCAAATTT |
| Shewanella sp MR-7 | Shewmr7_0766 | -198 | 4.3 | CCCTGTGATCTAGCTCAAATTT |
| Shewanella baltica OS155 | Sbal_3564 | -196 | 3.7 | CTCTGTGATCTTGGTCGTATTC |
| Shewanella amazonensis SB2B | Sama_0550 | -128 | 4.7 | TAATTTGATGTGAATCAACTTT |
|
Position: -67
Score: 4.1 Sequence: AAATGTGTTAAACCACACAAAA
Locus tag: SO3896
|
||||
| SO3896 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: outer membrane porin | ||||
| Shewanella oneidensis MR-1 | SO3896 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp ANA-3 | Shewana3_0733 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp MR-4 | Shewmr4_3228 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella sp MR-7 | Shewmr7_0761 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella baltica OS155 | Sbal_3570 | -67 | 3.6 | AAATGCGTTAAACCACACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -145 | 4.5 | TTATTTGATCTAGGCCACACTA |
| Shewanella loihica PV-4 | Shew_3260 | -150 | 4.1 | AAATTTGATCTGCGCCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella piezotolerans WP3 | swp_4514 | -150 | 4.1 | AAACTTGATCTAGCCCACAATC |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -151 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_4152 | -241 | 3.3 | AATTATTAACTCTTTCTTAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_4151 | -149 | 4.3 | AAGTTTGATCTAGTCCACAATC |
|
Position: -136
Score: 4 Sequence: AACAGTGATGCTGATTAAATTA
Locus tag: SO3914
|
||||
| SO3914 | -136 | 4 | AACAGTGATGCTGATTAAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3914 | ||||
| Ortholog function: ferrichrome-iron receptor | ||||
| Shewanella oneidensis MR-1 | SO3914 | -136 | 4 | AACAGTGATGCTGATTAAATTA |
| Shewanella sp ANA-3 | Shewana3_0716 | -135 | 4.2 | AATTGTGACTAAGATTAAATTG |
| Shewanella sp MR-4 | Shewmr4_3245 | -134 | 4.5 | TAATGTGACAAAGATTAAATTA |
| Shewanella sp MR-7 | Shewmr7_0697 | -134 | 4.9 | TAATGTGATATGTATTAAATTA |
|
Position: -168
Score: 3.9 Sequence: TGTTTTGGCCTACATCACAGAT
Locus tag: SO3969
|
||||
| SO3969 | -168 | 3.9 | TGTTTTGGCCTACATCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_3096 | ||||
| Ortholog function: Outer membrane lipoprotein omp16 precursor | ||||
| Shewanella amazonensis SB2B | Sama_3096 | -197 | 4 | TAATGGTATTAATATCAAATAT |
| -40 | 3.7 | AGTCGTTATACTGGCCACAAAA | ||
|
Position: -126
Score: 4.1 Sequence: CATTTTGATCTAGCGCAAACTT
Locus tag: SO3980
|
||||
| SO3980 | -126 | 4.1 | CATTTTGATCTAGCGCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: cytochrome c552 precursor (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTGGCGCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3486 | -149 | 3.9 | AAGTGTGAACAACAACACTATT |
| -126 | 4.1 | CATTTTGATCTGGCGCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0658 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0659 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3363 | -131 | 3.9 | AAGTGTGAACAACAACACTATT |
| -108 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0794 | -149 | 4.4 | AAATGTGAACAACAACACCTTT |
| -126 | 4.1 | CATTTTGATCTAGCGCAAACTT | ||
| Shewanella loihica PV-4 | Shew_0844 | -156 | 4.5 | AAATGTGACCAACAACACATTC |
| -133 | 4.2 | CATTATGATCTGCCTCAAGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0831 | -183 | 4 | ATACTTGATTACATTAACAAAT |
| -155 | 3.8 | AAGTGTGAGCAACAACACGTTC | ||
| -71 | 4.1 | ATAAGTGATTAAATTCAACCTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -152 | 4.2 | AAGTGTGAGCAACAACACATTC |
| Shewanella piezotolerans WP3 | swp_3958 | -150 | 4 | AAATGTGAGCAACAACACGTTC |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -154 | 4.6 | AAGTGTGAGCAACACCACATTT |
| -131 | 3.9 | CATTTTGATCTACCGCATACTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -154 | 4.4 | AAATGTGAGCAACAACACGTTT |
|
Position: -151
Score: 4.5 Sequence: AATAGTGTTGTTGTTCACACTT
Locus tag: SO3981
|
||||
| SO3981 | -151 | 4.5 | AATAGTGTTGTTGTTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -174 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -151 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -114 | 4.5 | AATAGTGTTGTTGTTCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -114 | 4.5 | AATAGTGTTGTTGTTCACACTT |
| Shewanella sp ANA-3 | Shewana3_0657 | -138 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -115 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0658 | -139 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -116 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3364 | -139 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -116 | 4.5 | AATAGTGTTGTTGTTCACACTT | ||
| Shewanella baltica OS155 | Sbal_0793 | -121 | 3.7 | AAGTTTGCGCTAGATCAAAATG |
| -98 | 4.5 | AAAGGTGTTGTTGTTCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -140 | 3.9 | AAACAGGATGTATCTCACAGTT |
| Shewanella amazonensis SB2B | Sama_0647 | -112 | 4 | GGATGTGTTATTGTTCACACTT |
| Shewanella loihica PV-4 | Shew_0843 | -136 | 3.9 | AAACTTGAGGCAGATCATAATG |
| -113 | 4.4 | GAATGTGTTGTTGGTCACATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_0830 | -109 | 4 | GAACGTGTTGTTGCTCACACTT |
| -81 | 3.8 | ATTTGTTAATGTAATCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -111 | 4.3 | GAATGTGTTGTTGCTCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -113 | 4.8 | AAATGTGGTGTTGCTCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -112 | 4.8 | AAACGTGTTGTTGCTCACATTT |
|
Position: -83
Score: 3.9 Sequence: TCTTGTGAGCGAGTTCACGCCT
Locus tag: SO3987
|
||||
| SO3987 | -83 | 3.9 | TCTTGTGAGCGAGTTCACGCCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3987 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3987 | -83 | 3.9 | TCTTGTGAGCGAGTTCACGCCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0679 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp W3-18-1 | Sputw3181_3492 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp ANA-3 | Shewana3_0651 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp MR-4 | Shewmr4_0652 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella sp MR-7 | Shewmr7_3370 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella baltica OS155 | Sbal_0787 | -277 | 3.7 | TAAAGCGATATATGTAACAAAC |
| Shewanella amazonensis SB2B | Sama_0602 | -307 | 4.1 | AAATTGAATATGGATCACATTT |
| Shewanella loihica PV-4 | Shew_0778 | -147 | 5.1 | AGATTTGATGTAAATCACATTT |
| -82 | 4.4 | TAAAGTGACCTGTCTCACACCT | ||
| Shewanella pealeana ATCC 700345 | Spea_0734 | -147 | 4.1 | CGATATGATTTGGATCACTTTT |
| -82 | 4.2 | AATAGTGATATACATCACAAGG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0787 | -81 | 4.9 | AATAGTGATGCAGATCACACTG |
| Shewanella piezotolerans WP3 | swp_4346 | -4 | 4.6 | TACTGTGATCGATATCACGTCT |
| Shewanella sediminis HAW-EB3 | Ssed_0816 | -321 | 3.9 | AAACTCAATATAGTTCACATTT |
| -147 | 3.9 | GGATATGATCTAAATCACACTG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3763 | -82 | 4.3 | TTGTGTGACCTGCATCACGCCA |
|
Position: -165
Score: 3.7 Sequence: TAAGGTGAGACTGCGCAAAATA
Locus tag: SO4003
|
||||
| SO4003 | -165 | 3.7 | TAAGGTGAGACTGCGCAAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4003 | ||||
| Ortholog function: response regulator | ||||
| Shewanella oneidensis MR-1 | SO4003 | -165 | 3.7 | TAAGGTGAGACTGCGCAAAATA |
| Shewanella sp ANA-3 | Shewana3_0479 | -159 | 4.1 | TTTTATGATGATTTTCATATTG |
| Shewanella sp MR-4 | Shewmr4_0481 | -159 | 4.3 | TTTTATGATATTTTTCATATTG |
| Shewanella sp MR-7 | Shewmr7_3549 | -159 | 4.2 | TTTTATGATACTTTTCATATTG |
|
Position: -158
Score: 4.4 Sequence: AAATGTGATTTGTATCAATATC
Locus tag: SO4018
|
||||
| SO4018 | -158 | 4.4 | AAATGTGATTTGTATCAATATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4018 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4018 | -158 | 4.4 | AAATGTGATTTGTATCAATATC |
| Shewanella putrefaciens CN-32 | Sputcn32_3258 | -158 | 4.2 | AAGTGTGGTTTGTATCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_0683 | -159 | 4.2 | AAGTGTGGTTTGTATCACTATT |
| Shewanella sp ANA-3 | Shewana3_3585 | -159 | 5.1 | AAATGTGATTTGTATCAACTTT |
| Shewanella baltica OS155 | Sbal_3741 | -159 | 4.2 | AAGTGTGGTTTGTATCACTATT |
|
Position: -233
Score: 4.2 Sequence: GATATTGATACAAATCACATTT
Locus tag: SO4019
|
||||
| SO4019 | -233 | 4.2 | GATATTGATACAAATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4019 | ||||
| Ortholog function: DNA helicase | ||||
| Shewanella oneidensis MR-1 | SO4019 | -233 | 4.2 | GATATTGATACAAATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3259 | -235 | 4.5 | AATAGTGATACAAACCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_0682 | -236 | 4.5 | AATAGTGATACAAACCACACTT |
| Shewanella baltica OS155 | Sbal_3742 | -239 | 4.5 | AATAGTGATACAAACCACACTT |
|
Position: -333
Score: 4.1 Sequence: TAGCGTGATTCATATTATAAAA
Locus tag: SO4062
|
||||
| SO4062 | -333 | 4.1 | TAGCGTGATTCATATTATAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psrA | ||||
| Ortholog function: polysulfide reductase, subunit A | ||||
| Shewanella sp ANA-3 | Shewana3_3619 | -278 | 3.8 | TCTATTGATCCTATTCACGAAT |
| Shewanella sp MR-4 | Shewmr4_3444 | -273 | 4 | CTTATTGATCTTATTCACGATT |
| Shewanella sp MR-7 | Shewmr7_0507 | -273 | 4 | CTTATTGATCTTATTCACGATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1999 | -181 | 3.8 | AACCGTGACATCAATCAAATCA |
| Shewanella pealeana ATCC 700345 | Spea_3039 | -182 | 4.4 | AACTGTGAATTGCCTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3127 | -183 | 4.5 | AACTGTGAATTGCTTCACAAAC |
| Shewanella piezotolerans WP3 | swp_1238 | -191 | 4.4 | AACTGTGAAACAACTCACAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_4047 | -228 | 3.9 | ACATTAGATAAATATCACATTT |
|
Position: -318
Score: 4.4 Sequence: TATTGTAATTTAGTCAACATTT
Position: -132
Score: 4.3 Sequence: AAATGTGACCTAATTGACGTAT
Locus tag: SO4118
|
||||
| SO4118 | -318 | 4.4 | TATTGTAATTTAGTCAACATTT | |
| -132 | 4.3 | AAATGTGACCTAATTGACGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4118 | ||||
| Ortholog function: NADP-dependent malic enzyme (EC 1.1.1.40) | ||||
| Shewanella oneidensis MR-1 | SO4118 | -318 | 4.4 | TATTGTAATTTAGTCAACATTT |
| -132 | 4.3 | AAATGTGACCTAATTGACGTAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0554 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3618 | -313 | 4 | TATTGTAATTTAGCCAAAATTT |
| -114 | 3.8 | GAATATGACAGGTTTCACGTTT | ||
| Shewanella sp ANA-3 | Shewana3_3669 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| -119 | 4.2 | GGATATGATGGGTTTCACATTT | ||
| Shewanella sp MR-4 | Shewmr4_3492 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella sp MR-7 | Shewmr7_0460 | -312 | 4.2 | TATTGTAATTTAATCAACATTT |
| Shewanella denitrificans OS217 | Sden_3353 | -298 | 3.8 | TCTTGTTATTTAAACAACATTT |
| -197 | 4.2 | TAATGTGATGCATAGCAGCCTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3757 | -303 | 4.1 | TATTGTTATTTAGACAAAATAA |
| Shewanella pealeana ATCC 700345 | Spea_3774 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3859 | -196 | 3.8 | TATAGCGATAAAGTTAAAAAAT |
| Shewanella piezotolerans WP3 | swp_0481 | -181 | 3.8 | TATAGCGATAAAGTTAAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4423 | -345 | 3.8 | AAGTTTTATCTAGTTAACCCTT |
|
Position: -92
Score: 4.1 Sequence: TTAATTGACCTAAATCAAACTT
Locus tag: SO4126
|
||||
| SO4126 | -92 | 4.1 | TTAATTGACCTAAATCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4126 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4126 | -92 | 4.1 | TTAATTGACCTAAATCAAACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0548 | -90 | 4.6 | TAATTTGACCTAGATCAAAGTT |
| Shewanella sp W3-18-1 | Sputw3181_3624 | -90 | 4.6 | TAATTTGACCTAGATCAAAGTT |
| Shewanella sp ANA-3 | Shewana3_3675 | -93 | 4.3 | TTAATTGACCTAGATCAAACTT |
| Shewanella sp MR-4 | Shewmr4_3498 | -187 | 4.2 | AACATTGAACTAGATCACAATT |
| -93 | 4.3 | TTAATTGACCTAGATCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_0454 | -187 | 4.2 | AACATTGAACTAGATCACAATT |
| -93 | 4.3 | TTAATTGACCTAGATCAAACTT | ||
| Shewanella baltica OS155 | Sbal_3847 | -90 | 4.3 | TTAATTGACCTAGATCAAACTT |
|
Position: -199
Score: 4.1 Sequence: TTATGTGATTTTCACAACAACA
Position: -157
Score: 3.8 Sequence: AATTGTAAATTTTTGCATATAT
Locus tag: SO4131
|
||||
| SO4131 | -199 | 4.1 | TTATGTGATTTTCACAACAACA | |
| -157 | 3.8 | AATTGTAAATTTTTGCATATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4131 | ||||
| Ortholog function: nucleoside-binding outer membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4131 | -199 | 4.1 | TTATGTGATTTTCACAACAACA |
| -157 | 3.8 | AATTGTAAATTTTTGCATATAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_0544 | -198 | 4.2 | TTATGTGATTTTGACAACAACA |
| -157 | 4.4 | AAATGTGAATTTTTGCATATAT | ||
| Shewanella sp W3-18-1 | Sputw3181_3628 | -198 | 4.2 | TTATGTGATTTTGACAACAACA |
| -157 | 4.4 | AAATGTGAATTTTTGCATATAT | ||
| Shewanella sp ANA-3 | Shewana3_3679 | -199 | 4.1 | TTATGTGATTTTCACAACAACA |
| -157 | 3.8 | AATTGTAAATTTTTGCATATAT | ||
| Shewanella sp MR-4 | Shewmr4_3504 | -199 | 4.1 | TTATGTGATTTTCACAACAACA |
| -157 | 3.8 | AATTGTAAATTTTTGCATATAT | ||
| Shewanella sp MR-7 | Shewmr7_0448 | -199 | 4.1 | TTATGTGATTTTCACAACAACA |
| -157 | 3.8 | AATTGTAAATTTTTGCATATAT | ||
| Shewanella baltica OS155 | Sbal_3851 | -198 | 4.2 | TTATGTGATTTTGACAACAACA |
| -157 | 3.8 | AAATGTAAATTTTTGCATATAT | ||
| Shewanella denitrificans OS217 | Sden_3073 | -165 | 3.8 | ATATGTCAACAATTTCATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3402 | -287 | 3.7 | CATAGTGATATTCGTTAAAATT |
| -243 | 3.7 | CTTTATGCGTTGCATCACACTA | ||
| Shewanella loihica PV-4 | Shew_3389 | -217 | 3.9 | AAATGTGACACAGGCAACAAAC |
|
Position: -343
Score: 4.6 Sequence: AAACGTGATCTGGATCAATATT
Position: -92
Score: 4.1 Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: SO4133
|
||||
| SO4133 | -343 | 4.6 | AAACGTGATCTGGATCAATATT | |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Shewanella oneidensis MR-1 | SO4133 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella putrefaciens CN-32 | Sputcn32_0543 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp W3-18-1 | Sputw3181_3629 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp ANA-3 | Shewana3_3680 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-4 | Shewmr4_3505 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-7 | Shewmr7_0447 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella baltica OS155 | Sbal_3852 | -229 | 3.8 | GATTAGGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella denitrificans OS217 | Sden_3074 | -92 | 4.4 | AACTGTGATGAAGTTAACCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3403 | -244 | 4.7 | TAACTTGATGTAAATCACGTTA |
| -92 | 4.8 | ATATGTGATCAAGTTAACCTTA | ||
| Shewanella amazonensis SB2B | Sama_0412 | -92 | 4.7 | ATTCGTGATCCAGTTAACCTTA |
| Shewanella loihica PV-4 | Shew_3390 | -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA |
| Shewanella pealeana ATCC 700345 | Spea_0460 | -92 | 4.7 | AAGTGTGATCGGCTTAACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0535 | -92 | 4.6 | AAGTGTGATCAGTTTAACCTTT |
| Shewanella piezotolerans WP3 | swp_4702 | -310 | 4.7 | ATTTGTGAGTTAGATCATGTTT |
| -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0461 | -92 | 4.7 | AAGTGTGATCGAGCTAACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2504 | -84 | 3.9 | CAATGTAATATGCAAAACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4509 | -272 | 4.9 | AAATGTGATGTGGGTCAACAAA |
| -92 | 4.7 | AAGTGTGATCAAGTTAACCTTA | ||
|
Position: -91
Score: 4.7 Sequence: AATATTGATCCAGATCACGTTT
Locus tag: SO4134
|
||||
| SO4134 | -91 | 4.7 | AATATTGATCCAGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4134 | ||||
| Ortholog function: Protein of unknown function DUF465 | ||||
| Shewanella oneidensis MR-1 | SO4134 | -91 | 4.7 | AATATTGATCCAGATCACGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0542 | -89 | 4.7 | AATATTGATCTAAGTCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_3630 | -89 | 4.7 | AATATTGATCTAAGTCACAATT |
| Shewanella sp ANA-3 | Shewana3_3681 | -91 | 4.6 | AATATTGATCCATATCACGTTT |
| Shewanella sp MR-4 | Shewmr4_3506 | -205 | 4 | AAGTGTGAGCCAGATCTAACTC |
| -91 | 4.6 | AATATTGATCCAAATCACGTTT | ||
| Shewanella sp MR-7 | Shewmr7_0446 | -205 | 4 | AAGTGTGAGCCAGATCTAACTC |
| -91 | 4.6 | AATATTGATCCAAATCACGTTT | ||
| Shewanella baltica OS155 | Sbal_3853 | -206 | 3.8 | AAGTGTGAACCAGATCCTAATC |
| -92 | 5 | AAGAGTGATCTAAGTCACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3404 | -219 | 4.7 | TAACGTGATTTACATCAAGTTA |
| -81 | 3.8 | CATTGTTATTGGAATAACATCT | ||
| Shewanella amazonensis SB2B | Sama_0411 | -89 | 4.5 | CTTAGTGATCCGGATCACTTTT |
| Shewanella pealeana ATCC 700345 | Spea_0459 | -99 | 4.9 | CTATTTGATCGATATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0534 | -97 | 4.6 | CAATTTGATCGATATCACGTTT |
| Shewanella piezotolerans WP3 | swp_4703 | -306 | 4 | TAAGGTTAACCTGATCACACTT |
| -88 | 4.8 | AAACATGATCTAACTCACAAAT | ||
|
Position: -96
Score: 4.2 Sequence: CATTGTGAAGCGTATCATGTAA
Locus tag: SO4138
|
||||
| SO4138 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4138 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4138 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0540 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp W3-18-1 | Sputw3181_3632 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp ANA-3 | Shewana3_3683 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-4 | Shewmr4_3508 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-7 | Shewmr7_0444 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella baltica OS155 | Sbal_3855 | -97 | 4.3 | ATGTGTGAAGCGTATCATGTAA |
| Shewanella loihica PV-4 | Shew_3393 | -109 | 3.9 | TAGCGTGAAGCATATCAAGCAA |
| Shewanella pealeana ATCC 700345 | Spea_0458 | -96 | 3.8 | TAGCGTGAAGAGGATCAAGCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0533 | -96 | 3.8 | TAGCGTGAAGGGGATCATGCTT |
|
Position: -162
Score: 4.3 Sequence: TTACATGATACGCTTCACAATG
Locus tag: SO4139
|
||||
| SO4139 | -162 | 4.3 | TTACATGATACGCTTCACAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4139 | ||||
| Ortholog function: tetratricopeptide repeat family protein | ||||
| Shewanella oneidensis MR-1 | SO4139 | -162 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_0538 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp W3-18-1 | Sputw3181_3634 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp ANA-3 | Shewana3_3685 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-4 | Shewmr4_3510 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-7 | Shewmr7_0442 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella baltica OS155 | Sbal_3857 | -95 | 4.5 | TTACATGATACGCTTCACACAT |
|
Position: -295
Score: 3.8 Sequence: AAATGTTAGCTCGATCACTGTC
Position: -121
Score: 3.9 Sequence: GAAAGTGACACACCTCAAATAA
Locus tag: SO4142
|
||||
| SO4142 | -295 | 3.8 | AAATGTTAGCTCGATCACTGTC | |
| -121 | 3.9 | GAAAGTGACACACCTCAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4142 | ||||
| Ortholog function: cytochrome c family protein | ||||
| Shewanella oneidensis MR-1 | SO4142 | -121 | 3.9 | GAAAGTGACACACCTCAAATAA |
| Shewanella sp ANA-3 | Shewana3_3688 | -118 | 4.2 | GAAAGTGATACACCTCAAATAA |
| Shewanella sp MR-4 | Shewmr4_3511 | -118 | 4.2 | GAAAGTGATACACCTCAAATAA |
| Shewanella sp MR-7 | Shewmr7_0441 | -122 | 4 | GAAGGTGATACACCTCAAATAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3554 | -112 | 4 | GGATATGATCTACTTCAAATTA |
| Shewanella amazonensis SB2B | Sama_3178 | -268 | 3.9 | AAACGTCACATAGATCACACAC |
| Shewanella loihica PV-4 | Shew_0516 | -113 | 4.1 | GAAGGTGATCAACATCAAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0616 | -289 | 3.8 | AAGTGTGATCTAGATCTGTTAC |
| Shewanella piezotolerans WP3 | swp_4577 | -133 | 4 | GAAAGTGATCGAGCTCAACTAT |
| Shewanella sediminis HAW-EB3 | Ssed_4058 | -112 | 4.7 | AAAGGTGATCAACATCAAATTT |
|
Position: -9
Score: 4.9 Sequence: TAATTTGATATGTATCATATAA
Locus tag: SO4154
|
||||
| SO4154 | -9 | 4.9 | TAATTTGATATGTATCATATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4154 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO4154 | -69 | 3.7 | AATTGTGCATTAGTTAATCTAT |
| -9 | 4.9 | TAATTTGATATGTATCATATAA | ||
| Shewanella sp ANA-3 | Shewana3_3695 | -9 | 4.3 | TAATTTGATATGTACCATATAA |
| Shewanella loihica PV-4 | Shew_0506 | -30 | 3.9 | TATTGAAATCATTTTCAAAAAA |
| -9 | 4 | ATTTTTGATATGTATCATCTCA | ||
| Shewanella piezotolerans WP3 | swp_4588 | -9 | 4.4 | ATATTTGATATGTACCACCTTA |
| Shewanella sediminis HAW-EB3 | Ssed_4064 | -9 | 4.4 | ATATTTGATATGTATCACCTCA |
| Shewanella woodyi ATCC 51908 | Swoo_0591 | -9 | 4.2 | ATTTTTGACATGTATCACCTCA |
|
Position: -202
Score: 4.4 Sequence: AAAAGTGATTTTCGTCACTAAA
Locus tag: SO4232
|
||||
| SO4232 | -202 | 4.4 | AAAAGTGATTTTCGTCACTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4232 | ||||
| Ortholog function: long-chain fatty acid transport protein | ||||
| Shewanella oneidensis MR-1 | SO4232 | -202 | 4.4 | AAAAGTGATTTTCGTCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0475 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_0378 | -195 | 4.6 | AAAAGTGATTTTTATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_3757 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-4 | Shewmr4_3584 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella sp MR-7 | Shewmr7_0372 | -201 | 4.6 | AAAAGTGATTTATCTCACTAAA |
| Shewanella baltica OS155 | Sbal_0390 | -207 | 4.3 | AATGGTGATATTGGTCACTAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3816 | -169 | 4.9 | AAGTTTGATCATGATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_3824 | -164 | 3.8 | AAGTGTGATCTACTCTGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0442 | -114 | 3.8 | TTTTGTGCTGTTTTTTATAAAG |
|
Position: -91
Score: 5 Sequence: AAGTGTGATGGACCTCTCATTT
Locus tag: SO4312
|
||||
| SO4312 | -91 | 5 | AAGTGTGATGGACCTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO4312 | -91 | 5 | AAGTGTGATGGACCTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3586 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3725 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp ANA-3 | Shewana3_0387 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0389 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3637 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0441 | -129 | 3.8 | AAATGCTACGATGATCACCATT |
| -100 | 3.9 | AAATGTGATCTTGATTGGCAAA | ||
| Shewanella amazonensis SB2B | Sama_3253 | -90 | 5.4 | AAATGTGATCTCTATCGCAAAT |
| Shewanella loihica PV-4 | Shew_0319 | -88 | 5.1 | AAGTGTGATCCAGCTCTCAAAT |
| Shewanella pealeana ATCC 700345 | Spea_0374 | -87 | 5.3 | AAGTGTGATCTTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3916 | -88 | 5.3 | AAGCGTGATGTTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0403 | -106 | 5.5 | AAATGTGATCGGAGTCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4132 | -90 | 5.2 | AAGTGTGATCTTGATCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0484 | -98 | 5 | AAGTGTGATCTTGGTCTCATTT |
|
Position: -172
Score: 3.9 Sequence: GATTGTGCTCATGTTAACACTT
Position: -132
Score: 4.5 Sequence: AAATGAGAGGTCCATCACACTT
Locus tag: SO4313
|
||||
| SO4313 | -172 | 3.9 | GATTGTGCTCATGTTAACACTT | |
| -132 | 4.5 | AAATGAGAGGTCCATCACACTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61) | ||||
| Shewanella oneidensis MR-1 | SO4313 | -172 | 3.9 | GATTGTGCTCATGTTAACACTT |
| -132 | 4.5 | AAATGAGAGGTCCATCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3587 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3726 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_0386 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0388 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3638 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella baltica OS155 | Sbal_4000 | -132 | 4.9 | AAATGTGAAGTCCGTCACACTT |
| Shewanella denitrificans OS217 | Sden_0388 | -85 | 3.9 | AAATCTGCTTTGCTTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0440 | -167 | 4 | AATGGTGATCATCGTAGCATTT |
| Shewanella amazonensis SB2B | Sama_3254 | -89 | 5.1 | ATTTGCGATAGAGATCACATTT |
| Shewanella loihica PV-4 | Shew_0318 | -119 | 4.7 | ATTTGAGAGCTGGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_0373 | -133 | 5 | AAATGCGATCAAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3917 | -133 | 5.1 | AAATGTGATCAACATCACGCTT |
| Shewanella piezotolerans WP3 | swp_0402 | -40 | 4.3 | AAATGTAATCCGTATCGCAACA |
| Shewanella sediminis HAW-EB3 | Ssed_4133 | -133 | 4.9 | AAATGAGATCAAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0483 | -229 | 4.6 | AAATGAGACCAAGATCACACTT |
|
Position: -86
Score: 4 Sequence: TATAGTGACTTCAATCACAACC
Locus tag: SO4349
|
||||
| SO4349 | -86 | 4 | TATAGTGACTTCAATCACAACC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvC | ||||
| Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86) | ||||
| Shewanella oneidensis MR-1 | SO4349 | -86 | 4 | TATAGTGACTTCAATCACAACC |
| Shewanella putrefaciens CN-32 | Sputcn32_3615 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp W3-18-1 | Sputw3181_3755 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp ANA-3 | Shewana3_0355 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp MR-4 | Shewmr4_0361 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella sp MR-7 | Shewmr7_3665 | -86 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella baltica OS155 | Sbal_4032 | -85 | 4.3 | TATAGTGATTTCAATCACAACC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0421 | -85 | 4.1 | TATAGTGACTTCAATCACAACG |
| Shewanella amazonensis SB2B | Sama_3282 | -88 | 4.4 | TATAGTGAGTTCAATCACAATC |
| Shewanella loihica PV-4 | Shew_0288 | -126 | 3.7 | CAATGTGACGTTTCGAATATAT |
| -77 | 3.8 | ATAGTTGATCTCATTCACAGCT | ||
| Shewanella piezotolerans WP3 | swp_0358 | -77 | 4.6 | TATAGTGATCTCAATCACAGCT |
| Shewanella sediminis HAW-EB3 | Ssed_4166 | -78 | 4 | TATAGTGATCTCAATCACTGCT |
| Shewanella woodyi ATCC 51908 | Swoo_0441 | -78 | 3.5 | TATAGTGAATTCAATCACTGCT |
|
Position: -220
Score: 3.8 Sequence: TTGGGTGAGCACTGTCACAGAT
Locus tag: SO4452
|
||||
| SO4452 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella oneidensis MR-1 | SO4452 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0274 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0273 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3748 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0284 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0101 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0082 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3524 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0087 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4120 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0122 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5009 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -171
Score: 4.3 Sequence: ATCTGTGACAGTGCTCACCCAA
Locus tag: SO4453
|
||||
| SO4453 | -171 | 4.3 | ATCTGTGACAGTGCTCACCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella oneidensis MR-1 | SO4453 | -171 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -175 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella baltica OS155 | Sbal_0283 | -170 | 4.4 | ATCTGTGACAGTCCTCACCTAA |
| Shewanella denitrificans OS217 | Sden_0100 | -130 | 4.6 | TTTTGTGACACAGCTCACCTCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0081 | -159 | 4.7 | ATTTGTGACTCGACTCACGCTA |
| Shewanella amazonensis SB2B | Sama_3523 | -157 | 4.3 | AATTGTGACGCCGCTCACTCAG |
| Shewanella loihica PV-4 | Shew_0086 | -148 | 4.5 | TAATGTGACACCGCTCACGAAG |
| Shewanella pealeana ATCC 700345 | Spea_4121 | -181 | 4.1 | TTTTGTGACAGTTATCACGGCA |
| Shewanella halifaxensis HAW-EB4 | Shal_0121 | -180 | 4.2 | TTTTGTGACAGTTATCACGCCA |
| Shewanella piezotolerans WP3 | swp_5010 | -176 | 4.4 | TTTTGTGACACTAATCACCTCA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -150 | 4.8 | TTTTGTGACACCCCTCACATAC |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -135 | 4.7 | TTTTGTGACGACACTCACATTC |
|
Position: -334
Score: 4 Sequence: TAGTTTGAAGTGGATCATCAAA
Locus tag: SO4503
|
||||
| SO4503 | -334 | 4 | TAGTTTGAAGTGGATCATCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4503 | ||||
| Ortholog function: formate dehydrogenase chain D (EC 1.2.1.2) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0343 | -187 | 4 | AAGTTTGAAGTAGATCATCAAA |
| -91 | 4.1 | AATTGCGATAGATCACGCATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3865 | -131 | 4 | AAGTTTGAAGTAGATCATCAAA |
| -35 | 4.1 | AATTGCGATAGATCACGCATTT | ||
| Shewanella sp ANA-3 | Shewana3_3910 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella sp MR-4 | Shewmr4_3714 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella sp MR-7 | Shewmr7_3785 | -187 | 4 | TTGTTTGAGGTGGATCATCAAA |
| -91 | 4 | AATTGCGACGGATCACGCATTT | ||
| Shewanella baltica OS155 | Sbal_4130 | -187 | 4 | TAGTTTGAACTAGATCATCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0051 | -139 | 3.7 | AGATTTGCGCCAGATCACGCTT |
| Shewanella amazonensis SB2B | Sama_3619 | -186 | 3.9 | AAGTTTGAAGTGGATCATCAAA |
| Shewanella loihica PV-4 | Shew_0053 | -190 | 4 | TAGTTTGAACTGGATCATCAAA |
| Shewanella pealeana ATCC 700345 | Spea_4143 | -183 | 4.2 | TAGTTTGAACTAGATCAACTAT |
| -87 | 3.9 | AAGTGTGATCGACCACTAACTT | ||
| -20 | 3.9 | TTGCGTGACAAGGATAAAAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0099 | -181 | 4.2 | TAGTTTGAACTAGATCAACTAT |
| -85 | 4.5 | AAATGTGATCTACTACTAATTT | ||
| Shewanella piezotolerans WP3 | swp_5036 | -86 | 4.2 | AAGTGTGATCTGCAGCTAACTT |
| -25 | 4 | AAAGGTAATTGAAATCTCATAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_4427 | -153 | 3.9 | TAACTTGAGCTGGATCATCAAT |
| -59 | 3.8 | TTAAATGAGAGAGATCACGCAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4819 | -163 | 4.3 | TTTTTTGAGCTAGATCATCAAA |
|
Position: -130
Score: 4 Sequence: TTTGATGATCCACTTCAAACTA
Locus tag: SO4504
|
||||
| SO4504 | -130 | 4 | TTTGATGATCCACTTCAAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4504 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4504 | -130 | 4 | TTTGATGATCCACTTCAAACTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0342 | -140 | 4.1 | TTTGATGATCTACTTCAAACTT |
| Shewanella sp W3-18-1 | Sputw3181_3866 | -140 | 4.1 | TTTGATGATCTACTTCAAACTT |
| Shewanella sp ANA-3 | Shewana3_3911 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella sp MR-4 | Shewmr4_3715 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella sp MR-7 | Shewmr7_3786 | -225 | 3.8 | ATGCGTGATCCGTCGCAATTAT |
| -131 | 3.9 | TTTGATGATCCACCTCAAACAA | ||
| Shewanella baltica OS155 | Sbal_4131 | -136 | 4.2 | TTTGATGATCTAGTTCAAACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0052 | -125 | 4.2 | TTTCGGGATCTAGTTCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3618 | -113 | 4 | TTTGATGATCCACTTCAAACTT |
| Shewanella loihica PV-4 | Shew_0054 | -127 | 4.1 | TTTGATGATCCAGTTCAAACTA |
| Shewanella pealeana ATCC 700345 | Spea_4142 | -123 | 4.2 | ATAGTTGATCTAGTTCAAACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0100 | -124 | 4.2 | ATAGTTGATCTAGTTCAAACTA |
| Shewanella piezotolerans WP3 | swp_5034 | -148 | 4 | TTATGAGATTTCAATTACCTTT |
| -87 | 3.8 | AAGTTAGCTGCAGATCACACTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4426 | -217 | 4.1 | ATGCGTGATCTCTCTCATTTAA |
| -123 | 3.9 | ATTGATGATCCAGCTCAAGTTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_4818 | -148 | 4.2 | TTTGATGATCTAGCTCAAAAAA |
|
Position: -214
Score: 4.1 Sequence: TTTTGTTAAGCAGATCATGTTT
Locus tag: SO4519
|
||||
| SO4519 | -214 | 4.1 | TTTTGTTAAGCAGATCATGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4519 | ||||
| Ortholog function: sodium-dependent transporter | ||||
| Shewanella oneidensis MR-1 | SO4519 | -214 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3507 | -224 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella sp W3-18-1 | Sputw3181_0399 | -278 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella sp ANA-3 | Shewana3_3925 | -236 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella sp MR-4 | Shewmr4_3729 | -236 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella sp MR-7 | Shewmr7_3800 | -236 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
| Shewanella baltica OS155 | Sbal_0220 | -228 | 4.1 | TTTTGTTAAGCAGATCATGTTT |
|
Position: -172
Score: 4.4 Sequence: AAACATGATCTGCTTAACAAAA
Locus tag: SO4520
|
||||
| SO4520 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4520 | ||||
| Ortholog function: Oxygen-independent coproporphyrinogen III oxidase, putative | ||||
| Shewanella oneidensis MR-1 | SO4520 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3506 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0400 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_3926 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp MR-4 | Shewmr4_3730 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella sp MR-7 | Shewmr7_3801 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella baltica OS155 | Sbal_0219 | -172 | 4.4 | AAACATGATCTGCTTAACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0076 | -182 | 4.4 | AAACATGATCTGCTTAACAAAT |
| Shewanella amazonensis SB2B | Sama_3604 | -171 | 3.9 | AAATATGCGCTGCTTAACAAAA |
| Shewanella loihica PV-4 | Shew_0073 | -182 | 4.1 | AAACATGACATGCTTAACAATT |
| Shewanella pealeana ATCC 700345 | Spea_4126 | -164 | 4.4 | AAGTATGATCCGCTTAACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0116 | -164 | 4.2 | AAGTATGACCCGCTTAACAAAA |
| Shewanella piezotolerans WP3 | swp_5018 | -166 | 4.2 | AAGTATGACTTACTTAACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4414 | -203 | 4 | AAACATGACTTGCTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4806 | -184 | 4 | AAACATGACTCGCTTAACAAAA |
|
Position: -307
Score: 4 Sequence: AAATGTCGCCTTGATCACATTT
Locus tag: SO4591
|
||||
| SO4591 | -307 | 4 | AAATGTCGCCTTGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cymA | ||||
| Ortholog function: membrane anchored tetraheme cytochrome c, CymA | ||||
| Shewanella oneidensis MR-1 | SO4591 | -307 | 4 | AAATGTCGCCTTGATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0286 | -306 | 4.7 | AAGTGTGCTATCGGTCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_3916 | -306 | 4.1 | AAGTGTGCCATCGATTACAATT |
| Shewanella sp ANA-3 | Shewana3_3977 | -309 | 4 | AAATGTCGCGTGGATCACATTT |
| Shewanella sp MR-4 | Shewmr4_3777 | -308 | 4.3 | AAATGTCGTCTTGATCACATTT |
| Shewanella sp MR-7 | Shewmr7_3850 | -318 | 4.5 | AAATGTAGTGTTGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0272 | -146 | 4.3 | AGTCGAGATCTAGCTCGCATTT |
| Shewanella loihica PV-4 | Shew_3540 | -169 | 4.2 | TATTATGAGCAATTTCATAAAA |
| Shewanella piezotolerans WP3 | swp_4806 | -276 | 3.8 | ATTTGAGATCTAAAAAAAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_0216 | -86 | 3.7 | CAGTATGATCTAGTTTATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_0195 | -152 | 4.3 | AATTTTTATATTTATCAAAATA |
|
Position: -317
Score: 4.2 Sequence: AGAAGTGATCTTGATCAATTTT
Locus tag: SO4606
|
||||
| SO4606 | -317 | 4.2 | AGAAGTGATCTTGATCAATTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4606 | ||||
| Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1) | ||||
| Shewanella oneidensis MR-1 | SO4606 | -317 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -309 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -309 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella sp ANA-3 | Shewana3_3991 | -318 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella sp MR-4 | Shewmr4_3791 | -318 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella sp MR-7 | Shewmr7_3864 | -317 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella baltica OS155 | Sbal_0154 | -317 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella denitrificans OS217 | Sden_3517 | -316 | 4.4 | AAAAGTGATCTTGATCAATATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -321 | 3.9 | CAAAGTGATCTTGATCAATGTT |
| Shewanella amazonensis SB2B | Sama_3483 | -318 | 4.4 | TAAAGTGATCTTGATCAATATT |
| Shewanella loihica PV-4 | Shew_0125 | -321 | 4.4 | AAAAGTGATCTTGATCAATATT |
| -264 | 4 | TTATTTGTTATATCGCACAATT | ||
|
Position: -129
Score: 3.9 Sequence: AATCGTGATCACTATGGCAAAA
Locus tag: SO4619
|
||||
| SO4619 | -129 | 3.9 | AATCGTGATCACTATGGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhgI | ||||
| Ortholog function: NfuA Fe-S protein maturation | ||||
| Shewanella oneidensis MR-1 | SO4619 | -129 | 3.9 | AATCGTGATCACTATGGCAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3794 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0119 | -129 | 4.2 | AATCGTGATCACTTTTGCAAAA |
| Shewanella sp ANA-3 | Shewana3_4003 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-4 | Shewmr4_3804 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella sp MR-7 | Shewmr7_3880 | -128 | 4.1 | AAGCGTGATGGATTTTGCAAAA |
| Shewanella baltica OS155 | Sbal_0142 | -129 | 4 | AATCGTGATCGCTATGGCAAAA |
| Shewanella piezotolerans WP3 | swp_4841 | -131 | 3.8 | AAATGTGATCAGAACTGCGTTA |
|
Position: -95
Score: 4.4 Sequence: AAATATTACCCCGATCACATTA
Locus tag: SO4666
|
||||
| SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytcB | ||||
| Ortholog function: Cytochrome c4 | ||||
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella amazonensis SB2B | Sama_0091 | -95 | 3.7 | AAATATTGCCCCGATCACATAT |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
|
Position: -96
Score: 4.7 Sequence: TAATGTGATCGGGGTAATATTT
Locus tag: SO4667
|
||||
| SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -136
Score: 4.2 Sequence: AATTGAGAACTGGCTCACTTTT
Locus tag: SO4699
|
||||
| SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prlC | ||||
| Ortholog function: Oligopeptidase A (EC 3.4.24.70) | ||||
| Shewanella oneidensis MR-1 | SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0087 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp W3-18-1 | Sputw3181_3978 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp ANA-3 | Shewana3_4051 | -136 | 4.6 | AATTGTGAACTGGTTCGCTTTT |
| Shewanella sp MR-4 | Shewmr4_3842 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella sp MR-7 | Shewmr7_3935 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella baltica OS155 | Sbal_0124 | -136 | 4.3 | AAATGCGAACGAGTTCACTTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3874 | -226 | 4 | AATTGGGATCTTAGTCACTCTA |
| Shewanella loihica PV-4 | Shew_3657 | -247 | 3.8 | ATTTGCGATCCGCTTGGCAATA |
| Shewanella pealeana ATCC 700345 | Spea_4065 | -143 | 3.9 | AAACTTGATTAAGATCGCGGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Shewanella piezotolerans WP3 | swp_4926 | -311 | 3.7 | ATTTGCGAGGCGCTTTGCAATA |
| -261 | 3.6 | AAAATTGACTTTAGTCAAAGAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0145 | -210 | 4.1 | ATTTGAGAAGTAATTCTCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0124 | -172 | 4.2 | TTTTTTGAGCTGGGTCAAAGTA |
|
Position: -154
Score: 4.5 Sequence: AAAAGTGAGCCAGTTCTCAATT
Position: -136
Score: 3.6 Sequence: AATTAGGATTTACACCAAATTT
Locus tag: SO4700
|
||||
| SO4700 | -154 | 4.5 | AAAAGTGAGCCAGTTCTCAATT | |
| -136 | 3.6 | AATTAGGATTTACACCAAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -154 | 4.5 | AAAAGTGAGCCAGTTCTCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0086 | -153 | 4.5 | AAAAGTGAACTAGTTCTCAATT |
| Shewanella sp W3-18-1 | Sputw3181_3979 | -153 | 4.5 | AAAAGTGAACTAGTTCTCAATT |
| Shewanella sp ANA-3 | Shewana3_4052 | -154 | 4.3 | AAAAGCGAACCAGTTCACAATT |
| Shewanella sp MR-4 | Shewmr4_3843 | -95 | 4.4 | AAAAGCGACTCAGTTCACAATT |
| Shewanella sp MR-7 | Shewmr7_3936 | -95 | 4.4 | AAAAGCGACTCAGTTCACAATT |
| Shewanella baltica OS155 | Sbal_0123 | -154 | 4.6 | AAAAGTGAACTCGTTCGCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -148 | 4 | TAGAGTGACTAAGATCCCAATT |
| Shewanella loihica PV-4 | Shew_3658 | -101 | 3.6 | TATTGCCAAGCGGATCGCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -105 | 4.2 | TATTGTAAACCACGTCGCAAAT |
| Shewanella piezotolerans WP3 | swp_4927 | -104 | 3.7 | TATTGCAAAGCGCCTCGCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -115 | 4.2 | TATTGAGAATTACTTCTCAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -153 | 4.3 | TACTTTGACCCAGCTCAAAAAA |
| -78 | 3.9 | AAGCGTTATCATTTACACATTA | ||
|
Position: -164
Score: 4.9 Sequence: AATTTTGATCTGTATCACGCAA
Locus tag: SO4743
|
||||
| SO4743 | -164 | 4.9 | AATTTTGATCTGTATCACGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: ferrichrome-iron receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -164 | 4.9 | AATTTTGATCTGTATCACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp MR-4 | Shewmr4_3922 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_4014 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -116 | 4.7 | ATTTTTGATATATATCACAGTC |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -46 | 3.8 | TATTGCGACTCAATTAATACAT |
| Shewanella piezotolerans WP3 | swp_5150 | -117 | 4.3 | TGTTGTGCGCGAGTTCACATTG |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -91 | 3.8 | CTTTTTGATCTTTATCTAGTTT |