Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella oneidensis MR-1

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 24 61
TF AzrR Paraquat Superoxide stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 209 411
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF DeoR Nucleoside utilization 1 1
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 7 7
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 6
TF Fnr Oxygen Anaerobic metabolism 28 34
TF Fur Iron ion, (Fe2+) Iron homeostasis 32 36
TF GcvA Glycine Glycine metabolism 6 6
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 17 25
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 2 2
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 6
TF LexA DNA damage SOS response 10 13
TF LiuR Branched-chain amino acid degradation 7 8
TF LldR L-lactate Lactate utilization 1 1
TF MalR Maltose Maltodextrin utilization 2 2
TF MetR Homocysteine Methionine biosynthesis 5 9
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 2 2
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 6 6
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 19 21
TF NhaR Potassium ion Osmotic stress response 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 4 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 4 7
TF PdhR Pyruvate Pyruvate metabolism 4 6
TF PnuR NAD biosynthesis 1 1
TF PrpR 2-methylcitrate Methylcitrate utilization 1 3
TF PsrA Oleate Fatty acid degradation 14 16
TF PUR Purine metabolism 4 4
TF SdaR Glycerate Glycerate utilization 1 1
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO0734 1 1
TF SO1393 2 2
TF SO1415 3 3
TF SO1578 Glutathione metabolism 2 2
TF SO1703 Multidrug resistance 1 1
TF SO1758 1 1
TF SO2282 Amino acid efflux 1 1
TF SO3277 Multidrug resistance 2 2
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 1 1
TF SO3393 Drug resistance 2 2
TF SO3627 1 1
TF SO4326 Multidrug resistance 1 1
TF SO4468 2 2
TF SO4705 2 2
TF TrpR Tryptophan Aromatic amino acid metabolism 2 2
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 21 27
TF NmlR Diamide Carbonyl stress response 1 1
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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