Propagation of PdhR regulog to Shewanella oneidensis MR-1
| Source regulog: | PdhR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Pyruvate metabolism |
| Effector: | Pyruvate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella oneidensis MR-1 |
| Orthologous TF(s) | SO0423 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -38
Score: 6.4 Sequence: AATTGGTAAGACCAATT
Locus tag: SO0423
|
||||
| SO0423 | -38 | 6.4 | AATTGGTAAGACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhR | ||||
| Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family | ||||
| Shewanella oneidensis MR-1 | SO_0423 | -175 | 4.5 | TAATGGTCTGACCCCTT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3418 | -194 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp W3-18-1 | Sputw3181_0525 | -194 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp ANA-3 | Shewana3_0425 | -38 | 6.4 | AATTGGTAAGACCAATT |
| Shewanella sp MR-4 | Shewmr4_0427 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sp MR-7 | Shewmr7_3600 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella baltica OS155 | Sbal_3914 | -175 | 4.4 | AAATGGTCTGACCCCAT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella denitrificans OS217 | Sden_3384 | -185 | 4.8 | AAATGGTCTGACCCCTT |
| -38 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3778 | -186 | 4.8 | AAATGGTCTGACCCCTT |
| -49 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella amazonensis SB2B | Sama_0374 | -152 | 4.8 | AATTGGTCTGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella loihica PV-4 | Shew_3432 | -39 | 6.4 | AATTGGTAAGACCAATT |
| Shewanella pealeana ATCC 700345 | Spea_0418 | -158 | 4.2 | CATTGGTCAGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0475 | -157 | 4.4 | CATTGGTCTGACCCCTA |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella piezotolerans WP3 | swp_4753 | -158 | 4.2 | CATTGGTCTGACCCCAT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0430 | -158 | 4.5 | TAATGGTCAGACCCCTT |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0318 | -159 | 4.3 | TAATGGTCTGACCGCTA |
| -39 | 6.4 | AATTGGTAAGACCAATT | ||
|
Position: -306
Score: 4.6 Sequence: AAGTTGTCTGACAAATT
Position: -214
Score: 5.7 Sequence: TGTTGGTCAGACCAATT
Locus tag: SO1483
|
||||
| SO1483 | -306 | 4.6 | AAGTTGTCTGACAAATT | |
| -214 | 5.7 | TGTTGGTCAGACCAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Shewanella oneidensis MR-1 | SO_1483 | -306 | 4.6 | AAGTTGTCTGACAAATT |
| -214 | 5.7 | TGTTGGTCAGACCAATT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1238 | -145 | 5.7 | GTTTGGTCTGACCAATT |
| Shewanella sp W3-18-1 | Sputw3181_2866 | -144 | 5.7 | GTTTGGTCTGACCAATT |
| Shewanella sp ANA-3 | Shewana3_2943 | -306 | 4.6 | AAGTTGTCTGACAAATT |
| -214 | 5.8 | TCTTGGTCAGACCAATT | ||
| Shewanella sp MR-4 | Shewmr4_2767 | -306 | 4.6 | AAGTTGTCTGACAAATT |
| -214 | 5.8 | TCTTGGTCAGACCAATT | ||
| Shewanella sp MR-7 | Shewmr7_2845 | -306 | 4.6 | AAGTTGTCTGACAAATT |
| -214 | 5.8 | TCTTGGTCAGACCAATT | ||
| Shewanella baltica OS155 | Sbal_1316 | -221 | 5.7 | GCTTGGTCAGACCAATT |
| Shewanella denitrificans OS217 | Sden_1245 | -258 | 5.5 | CCTTGGTCATACCAATT |
| -166 | 5.7 | GCTTGGTCTTACCAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1101 | -299 | 5.2 | TGTTGGTAAGACCATTT |
| Shewanella amazonensis SB2B | Sama_2381 | -298 | 5.1 | TGTTGGTAAGACAAATT |
| -205 | 5.7 | GTTTGGTCTGACCAATT | ||
| Shewanella loihica PV-4 | Shew_1275 | -233 | 5.6 | GTTTGGTCTTACCAATT |
| Shewanella pealeana ATCC 700345 | Spea_1290 | -349 | 4.6 | AATTTGTCTTACAAGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1414 | -305 | 4.7 | CATTTGTCTGACAAATT |
| -215 | 5.6 | GATTGGTCATACCATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1528 | -335 | 5.2 | AATTTGTCTGACAAATT |
|
Position: -280
Score: 6.4 Sequence: AATTGGTATGACCAATT
Locus tag: SO2911
|
||||
| SO2911 | -280 | 6.4 | AATTGGTATGACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: formate transporter | ||||
| Shewanella oneidensis MR-1 | SO_2911 | -280 | 6.4 | AATTGGTATGACCAATT |
| Shewanella sp ANA-3 | Shewana3_1556 | -253 | 6.4 | AATTGGTATGACCAATT |
| Shewanella sp MR-4 | Shewmr4_1495 | -254 | 6.4 | AATTGGTATGACCAATT |
| Shewanella sp MR-7 | Shewmr7_1562 | -254 | 6.4 | AATTGGTATGACCAATT |
| Shewanella baltica OS155 | Sbal_2670 | -254 | 6.1 | TATTGGTAAGACCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2880 | -351 | 6.4 | AATTGGTAAGACCAATT |
|
Position: -247
Score: 6.4 Sequence: AATTGGTCTTACCAATT
Locus tag: SO2912
|
||||
| SO2912 | -247 | 6.4 | AATTGGTCTTACCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflB | ||||
| Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54) | ||||
| Shewanella oneidensis MR-1 | SO_2912 | -247 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_2378 | -256 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp W3-18-1 | Sputw3181_1631 | -256 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp ANA-3 | Shewana3_1555 | -246 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp MR-4 | Shewmr4_1494 | -246 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sp MR-7 | Shewmr7_1561 | -246 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella baltica OS155 | Sbal_2671 | -245 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella denitrificans OS217 | Sden_2406 | -165 | 6.1 | AATTGGTCTTACCAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2473 | -216 | 5.9 | AATTGGTCTTACCATTT |
| Shewanella amazonensis SB2B | Sama_1498 | -163 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella loihica PV-4 | Shew_2390 | -242 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella pealeana ATCC 700345 | Spea_1672 | -229 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_2592 | -238 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella piezotolerans WP3 | swp_1952 | -222 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1708 | -240 | 6.4 | AATTGGTCTTACCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2883 | -235 | 6.4 | AATTGGTCTTACCAATT |