Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of IlvY regulog to Shewanella oneidensis MR-1

Reference regulog properties
Source regulog: IlvY - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Branched-chain amino acid biosynthesis
Effector: Acetohydroxybutyrate; 2-Acetolactate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella oneidensis MR-1
Orthologous TF(s) SO4350
Regulated genes 2
Built upon 64 sites [see more]
Predicted regulatory interactions in Shewanella oneidensis MR-1
Locus tag Position Score Sequence
Position: -147
Score: 5.1
Sequence: ATTGCAAAAAACGCAAT
Locus tag: SO4349
SO4349 -147 5.1 ATTGCAAAAAACGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO_4349 -147 5.1 ATTGCAAAAAACGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella putrefaciens CN-32 Sputcn32_3615 -147 5 GTTGCGAATAATGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella sp W3-18-1 Sputw3181_3755 -147 5 GTTGCGAATAATGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella sp ANA-3 Shewana3_0355 -147 5.2 ATTGCATAAAACGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella sp MR-4 Shewmr4_0361 -147 5.2 ATTGCATAAAACGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella sp MR-7 Shewmr7_3665 -147 5.2 ATTGCATAAAACGCAAT
-116 4.8 ATATCATTTTAAGCAAC
Shewanella baltica OS155 Sbal_4032 -146 4.8 GTTGCGCATAATGCAAT
-115 4.9 ATATCATTTTAAGCAAT
Shewanella denitrificans OS217 Sden_3415 -199 5 ATTGCAAAAAACGCAAC
-168 4.9 ATATCATTTTAAGCAAT
Shewanella frigidimarina NCIMB 400 Sfri_0421 -146 5.1 GTTGCATTAATTGCAAC
-115 4.9 ATATCATTTTAAGCAAT
Shewanella amazonensis SB2B Sama_3282 -149 5 GTTGCAAAAATTGAAAT
-118 4.6 ATATCATTTTGAGCAAT
Shewanella loihica PV-4 Shew_0288 -139 5.3 ATTGCAAAAAATGCAAT
-108 4.9 ATATCATTTTAAGCAAT
Shewanella pealeana ATCC 700345 Spea_0344 -136 4.6 GTTGCAAAAGATGCAAC
-105 4.9 ATATCATTTTAAGCAAT
Shewanella halifaxensis HAW-EB4 Shal_3945 -138 5 ATTGCAAAAAACGCAAC
-107 4.9 ATATCATTTTAAGCAAT
Shewanella piezotolerans WP3 swp_0358 -138 4.7 GTTGCACAAAACGCAAC
-107 4.9 ATATCATTTTAAGCAAT
Shewanella sediminis HAW-EB3 Ssed_4166 -139 4.6 GTTGCGTAAAGCGCAAT
-108 4.9 ATATCATTTTAAGCAAT
Shewanella woodyi ATCC 51908 Swoo_0441 -139 5.2 GTTGCAATAATTGCAAT
-108 4.9 ATATCATTTTAAGCAAT
Position: -66
Score: 5.1
Sequence: ATTGCGTTTTTTGCAAT
Locus tag: SO4350
SO4350 -66 5.1 ATTGCGTTTTTTGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvY
Ortholog function: HTH-type transcriptional regulator IlvY
Shewanella oneidensis MR-1 SO_4350 -97 4.8 GTTGCTTAAAATGATAT
-66 5.1 ATTGCGTTTTTTGCAAT
Shewanella putrefaciens CN-32 Sputcn32_3616 -134 4.8 GTTGCTTAAAATGATAT
-103 5 ATTGCATTATTCGCAAC
Shewanella sp W3-18-1 Sputw3181_3756 -97 4.8 GTTGCTTAAAATGATAT
-66 5 ATTGCATTATTCGCAAC
Shewanella sp ANA-3 Shewana3_0354 -97 4.8 GTTGCTTAAAATGATAT
-66 5.2 ATTGCGTTTTATGCAAT
Shewanella sp MR-4 Shewmr4_0360 -97 4.8 GTTGCTTAAAATGATAT
-66 5.2 ATTGCGTTTTATGCAAT
Shewanella sp MR-7 Shewmr7_3666 -97 4.8 GTTGCTTAAAATGATAT
-66 5.2 ATTGCGTTTTATGCAAT
Shewanella baltica OS155 Sbal_4033 -163 4.9 ATTGCTTAAAATGATAT
-132 4.8 ATTGCATTATGCGCAAC
Shewanella denitrificans OS217 Sden_3416 -92 4.9 ATTGCTTAAAATGATAT
-61 5 GTTGCGTTTTTTGCAAT
Shewanella frigidimarina NCIMB 400 Sfri_0420 -110 4.9 ATTGCTTAAAATGATAT
-79 5.1 GTTGCAATTAATGCAAC
Shewanella amazonensis SB2B Sama_3283 -114 4.6 ATTGCTCAAAATGATAT
-83 5 ATTTCAATTTTTGCAAC
Shewanella loihica PV-4 Shew_0287 -101 4.9 ATTGCTTAAAATGATAT
-70 5.3 ATTGCATTTTTTGCAAT
Shewanella pealeana ATCC 700345 Spea_0343 -92 4.9 ATTGCTTAAAATGATAT
-61 4.6 GTTGCATCTTTTGCAAC
Shewanella halifaxensis HAW-EB4 Shal_3946 -93 4.9 ATTGCTTAAAATGATAT
-62 5 GTTGCGTTTTTTGCAAT
Shewanella piezotolerans WP3 swp_0357 -112 4.9 ATTGCTTAAAATGATAT
-81 4.7 GTTGCGTTTTGTGCAAC
Shewanella sediminis HAW-EB3 Ssed_4167 -132 4.9 ATTGCTTAAAATGATAT
-101 4.6 ATTGCGCTTTACGCAAC
Shewanella woodyi ATCC 51908 Swoo_0440 -87 4.9 ATTGCTTAAAATGATAT
-56 5.2 ATTGCAATTATTGCAAC
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