Profile of regulator IlvY in Shewanellaceae
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Branched-chain amino acid biosynthesis |
| Effector: | Acetohydroxybutyrate; 2-Acetolactate |
| Regulog: | IlvY - Shewanellaceae |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Acetohydroxybutyrate
- By effector - 2-Acetolactate
- By pathway - Branched-chain amino acid biosynthesis
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Shewanella oneidensis MR-1 | |||||
| SO_4349 | ilvC | -147 | 5.1 | ATTGCAAAAAACGCAAT | |
| SO_4349 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| SO_4350 | ilvY | -97 | 4.8 | GTTGCTTAAAATGATAT | |
| SO_4350 | ilvY | -66 | 5.1 | ATTGCGTTTTTTGCAAT | |
| Shewanella putrefaciens CN-32 | |||||
| Sputcn32_3615 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| Sputcn32_3615 | ilvC | -147 | 5 | GTTGCGAATAATGCAAT | |
| Sputcn32_3616 | ilvY | -134 | 4.8 | GTTGCTTAAAATGATAT | |
| Sputcn32_3616 | ilvY | -103 | 5 | ATTGCATTATTCGCAAC | |
| Shewanella sp W3-18-1 | |||||
| Sputw3181_3755 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| Sputw3181_3755 | ilvC | -147 | 5 | GTTGCGAATAATGCAAT | |
| Sputw3181_3756 | ilvY | -97 | 4.8 | GTTGCTTAAAATGATAT | |
| Sputw3181_3756 | ilvY | -66 | 5 | ATTGCATTATTCGCAAC | |
| Shewanella sp ANA-3 | |||||
| Shewana3_0355 | ilvC | -147 | 5.2 | ATTGCATAAAACGCAAT | |
| Shewana3_0355 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| Shewana3_0354 | ilvY | -97 | 4.8 | GTTGCTTAAAATGATAT | |
| Shewana3_0354 | ilvY | -66 | 5.2 | ATTGCGTTTTATGCAAT | |
| Shewanella sp MR-4 | |||||
| Shewmr4_0361 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| Shewmr4_0361 | ilvC | -147 | 5.2 | ATTGCATAAAACGCAAT | |
| Shewmr4_0360 | ilvY | -97 | 4.8 | GTTGCTTAAAATGATAT | |
| Shewmr4_0360 | ilvY | -66 | 5.2 | ATTGCGTTTTATGCAAT | |
| Shewanella sp MR-7 | |||||
| Shewmr7_3665 | ilvC | -147 | 5.2 | ATTGCATAAAACGCAAT | |
| Shewmr7_3665 | ilvC | -116 | 4.8 | ATATCATTTTAAGCAAC | |
| Shewmr7_3666 | ilvY | -97 | 4.8 | GTTGCTTAAAATGATAT | |
| Shewmr7_3666 | ilvY | -66 | 5.2 | ATTGCGTTTTATGCAAT | |
| Shewanella baltica OS155 | |||||
| Sbal_4032 | ilvC | -115 | 4.9 | ATATCATTTTAAGCAAT | |
| Sbal_4032 | ilvC | -146 | 4.8 | GTTGCGCATAATGCAAT | |
| Sbal_4033 | ilvY | -163 | 4.9 | ATTGCTTAAAATGATAT | |
| Sbal_4033 | ilvY | -132 | 4.8 | ATTGCATTATGCGCAAC | |
| Shewanella denitrificans OS217 | |||||
| Sden_3415 | ilvC | -168 | 4.9 | ATATCATTTTAAGCAAT | |
| Sden_3415 | ilvC | -199 | 5 | ATTGCAAAAAACGCAAC | |
| Sden_3416 | ilvY | -92 | 4.9 | ATTGCTTAAAATGATAT | |
| Sden_3416 | ilvY | -61 | 5 | GTTGCGTTTTTTGCAAT | |
| Shewanella frigidimarina NCIMB 400 | |||||
| Sfri_0421 | ilvC | -115 | 4.9 | ATATCATTTTAAGCAAT | |
| Sfri_0421 | ilvC | -146 | 5.1 | GTTGCATTAATTGCAAC | |
| Sfri_0420 | ilvY | -110 | 4.9 | ATTGCTTAAAATGATAT | |
| Sfri_0420 | ilvY | -79 | 5.1 | GTTGCAATTAATGCAAC | |
| Shewanella amazonensis SB2B | |||||
| Sama_3282 | ilvC | -149 | 5 | GTTGCAAAAATTGAAAT | |
| Sama_3282 | ilvC | -118 | 4.6 | ATATCATTTTGAGCAAT | |
| Sama_3283 | ilvY | -83 | 5 | ATTTCAATTTTTGCAAC | |
| Sama_3283 | ilvY | -114 | 4.6 | ATTGCTCAAAATGATAT | |
| Shewanella loihica PV-4 | |||||
| Shew_0288 | ilvC | -108 | 4.9 | ATATCATTTTAAGCAAT | |
| Shew_0288 | ilvC | -139 | 5.3 | ATTGCAAAAAATGCAAT | |
| Shew_0287 | ilvY | -101 | 4.9 | ATTGCTTAAAATGATAT | |
| Shew_0287 | ilvY | -70 | 5.3 | ATTGCATTTTTTGCAAT | |
| Shewanella pealeana ATCC 700345 | |||||
| Spea_0344 | ilvC | -136 | 4.6 | GTTGCAAAAGATGCAAC | |
| Spea_0344 | ilvC | -105 | 4.9 | ATATCATTTTAAGCAAT | |
| Spea_0343 | ilvY | -92 | 4.9 | ATTGCTTAAAATGATAT | |
| Spea_0343 | ilvY | -61 | 4.6 | GTTGCATCTTTTGCAAC | |
| Shewanella halifaxensis HAW-EB4 | |||||
| Shal_3945 | ilvC | -138 | 5 | ATTGCAAAAAACGCAAC | |
| Shal_3945 | ilvC | -107 | 4.9 | ATATCATTTTAAGCAAT | |
| Shal_3946 | ilvY | -93 | 4.9 | ATTGCTTAAAATGATAT | |
| Shal_3946 | ilvY | -62 | 5 | GTTGCGTTTTTTGCAAT | |
| Shewanella piezotolerans WP3 | |||||
| swp_0358 | ilvC | -138 | 4.7 | GTTGCACAAAACGCAAC | |
| swp_0358 | ilvC | -107 | 4.9 | ATATCATTTTAAGCAAT | |
| swp_0357 | ilvY | -112 | 4.9 | ATTGCTTAAAATGATAT | |
| swp_0357 | ilvY | -81 | 4.7 | GTTGCGTTTTGTGCAAC | |
| Shewanella sediminis HAW-EB3 | |||||
| Ssed_4166 | ilvC | -139 | 4.6 | GTTGCGTAAAGCGCAAT | |
| Ssed_4166 | ilvC | -108 | 4.9 | ATATCATTTTAAGCAAT | |
| Ssed_4167 | ilvY | -132 | 4.9 | ATTGCTTAAAATGATAT | |
| Ssed_4167 | ilvY | -101 | 4.6 | ATTGCGCTTTACGCAAC | |
| Shewanella woodyi ATCC 51908 | |||||
| Swoo_0441 | ilvC | -139 | 5.2 | GTTGCAATAATTGCAAT | |
| Swoo_0441 | ilvC | -108 | 4.9 | ATATCATTTTAAGCAAT | |
| Swoo_0440 | ilvY | -87 | 4.9 | ATTGCTTAAAATGATAT | |
| Swoo_0440 | ilvY | -56 | 5.2 | ATTGCAATTATTGCAAC | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |