Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog IlvY - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Branched-chain amino acid biosynthesis
Effector: Acetohydroxybutyrate; 2-Acetolactate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 64 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 2
Shewanella putrefaciens CN-32 2 2
Shewanella sp W3-18-1 2 2
Shewanella sp ANA-3 2 2
Shewanella sp MR-4 2 2
Shewanella sp MR-7 2 2
Shewanella baltica OS155 2 2
Shewanella denitrificans OS217 2 2
Shewanella frigidimarina NCIMB 400 2 2
Shewanella amazonensis SB2B 2 2
Shewanella loihica PV-4 2 2
Shewanella pealeana ATCC 700345 2 2
Shewanella halifaxensis HAW-EB4 2 2
Shewanella piezotolerans WP3 2 2
Shewanella sediminis HAW-EB3 2 2
Shewanella woodyi ATCC 51908 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ilvC
*
Shewanella oneidensis MR-1

Site:
position = -147
score = 5.12548
sequence = ATTGCAAAAAACGCAAT

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Gene: SO_4349: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella putrefaciens CN-32

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Site:
position = -147
score = 5.02076
sequence = GTTGCGAATAATGCAAT

Gene: Sputcn32_3615: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella sp W3-18-1

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Site:
position = -147
score = 5.02076
sequence = GTTGCGAATAATGCAAT

Gene: Sputw3181_3755: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella sp ANA-3

Site:
position = -147
score = 5.20597
sequence = ATTGCATAAAACGCAAT

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Gene: Shewana3_0355: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella sp MR-4

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Site:
position = -147
score = 5.20597
sequence = ATTGCATAAAACGCAAT

Gene: Shewmr4_0361: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella sp MR-7

Site:
position = -147
score = 5.20597
sequence = ATTGCATAAAACGCAAT

Site:
position = -116
score = 4.77048
sequence = ATATCATTTTAAGCAAC

Gene: Shewmr7_3665: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella baltica OS155

Site:
position = -115
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Site:
position = -146
score = 4.83255
sequence = GTTGCGCATAATGCAAT

Gene: Sbal_4032: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella denitrificans OS217

Site:
position = -168
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Site:
position = -199
score = 5.02076
sequence = ATTGCAAAAAACGCAAC

Gene: Sden_3415: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -115
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Site:
position = -146
score = 5.13666
sequence = GTTGCATTAATTGCAAC

Gene: Sfri_0421: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella amazonensis SB2B

Site:
position = -149
score = 4.98551
sequence = GTTGCAAAAATTGAAAT

Site:
position = -118
score = 4.60649
sequence = ATATCATTTTGAGCAAT

Gene: Sama_3282: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella loihica PV-4

Site:
position = -108
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Site:
position = -139
score = 5.31926
sequence = ATTGCAAAAAATGCAAT

Gene: Shew_0288: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella pealeana ATCC 700345

Site:
position = -136
score = 4.64875
sequence = GTTGCAAAAGATGCAAC

Site:
position = -105
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Gene: Spea_0344: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -138
score = 5.02076
sequence = ATTGCAAAAAACGCAAC

Site:
position = -107
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Gene: Shal_3945: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella piezotolerans WP3

Site:
position = -138
score = 4.72784
sequence = GTTGCACAAAACGCAAC

Site:
position = -107
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Gene: swp_0358: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella sediminis HAW-EB3

Site:
position = -139
score = 4.63877
sequence = GTTGCGTAAAGCGCAAT

Site:
position = -108
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Gene: Ssed_4166: Ketol-acid reductoisomerase (EC 1.1.1.86)
*
Shewanella woodyi ATCC 51908

Site:
position = -139
score = 5.16088
sequence = GTTGCAATAATTGCAAT

Site:
position = -108
score = 4.8752
sequence = ATATCATTTTAAGCAAT

Gene: Swoo_0441: Ketol-acid reductoisomerase (EC 1.1.1.86)
Ketol-acid reductoisomerase (EC 1.1.1.86)
 
CRON 2.
ilvY
*
Shewanella oneidensis MR-1

Site:
position = -97
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -66
score = 5.12548
sequence = ATTGCGTTTTTTGCAAT

Gene: SO_4350: HTH-type transcriptional regulator IlvY
*
Shewanella putrefaciens CN-32

Site:
position = -134
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -103
score = 5.02076
sequence = ATTGCATTATTCGCAAC

Gene: Sputcn32_3616: HTH-type transcriptional regulator IlvY
*
Shewanella sp W3-18-1

Site:
position = -97
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -66
score = 5.02076
sequence = ATTGCATTATTCGCAAC

Gene: Sputw3181_3756: HTH-type transcriptional regulator IlvY
*
Shewanella sp ANA-3

Site:
position = -97
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -66
score = 5.20597
sequence = ATTGCGTTTTATGCAAT

Gene: Shewana3_0354: HTH-type transcriptional regulator IlvY
*
Shewanella sp MR-4

Site:
position = -97
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -66
score = 5.20597
sequence = ATTGCGTTTTATGCAAT

Gene: Shewmr4_0360: HTH-type transcriptional regulator IlvY
*
Shewanella sp MR-7

Site:
position = -97
score = 4.77048
sequence = GTTGCTTAAAATGATAT

Site:
position = -66
score = 5.20597
sequence = ATTGCGTTTTATGCAAT

Gene: Shewmr7_3666: HTH-type transcriptional regulator IlvY
*
Shewanella baltica OS155

Site:
position = -163
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -132
score = 4.83255
sequence = ATTGCATTATGCGCAAC

Gene: Sbal_4033: HTH-type transcriptional regulator IlvY
*
Shewanella denitrificans OS217

Site:
position = -92
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -61
score = 5.02076
sequence = GTTGCGTTTTTTGCAAT

Gene: Sden_3416: HTH-type transcriptional regulator IlvY
*
Shewanella frigidimarina NCIMB 400

Site:
position = -110
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -79
score = 5.13666
sequence = GTTGCAATTAATGCAAC

Gene: Sfri_0420: HTH-type transcriptional regulator IlvY
*
Shewanella amazonensis SB2B

Site:
position = -83
score = 4.98551
sequence = ATTTCAATTTTTGCAAC

Site:
position = -114
score = 4.60649
sequence = ATTGCTCAAAATGATAT

Gene: Sama_3283: HTH-type transcriptional regulator IlvY
*
Shewanella loihica PV-4

Site:
position = -101
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -70
score = 5.31926
sequence = ATTGCATTTTTTGCAAT

Gene: Shew_0287: HTH-type transcriptional regulator IlvY
*
Shewanella pealeana ATCC 700345

Site:
position = -92
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -61
score = 4.64875
sequence = GTTGCATCTTTTGCAAC

Gene: Spea_0343: HTH-type transcriptional regulator IlvY
*
Shewanella halifaxensis HAW-EB4

Site:
position = -93
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -62
score = 5.02076
sequence = GTTGCGTTTTTTGCAAT

Gene: Shal_3946: HTH-type transcriptional regulator IlvY
*
Shewanella piezotolerans WP3

Site:
position = -112
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -81
score = 4.72784
sequence = GTTGCGTTTTGTGCAAC

Gene: swp_0357: HTH-type transcriptional regulator IlvY
*
Shewanella sediminis HAW-EB3

Site:
position = -132
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -101
score = 4.63877
sequence = ATTGCGCTTTACGCAAC

Gene: Ssed_4167: HTH-type transcriptional regulator IlvY
*
Shewanella woodyi ATCC 51908

Site:
position = -87
score = 4.8752
sequence = ATTGCTTAAAATGATAT

Site:
position = -56
score = 5.16088
sequence = ATTGCAATTATTGCAAC

Gene: Swoo_0440: HTH-type transcriptional regulator IlvY
HTH-type transcriptional regulator IlvY
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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