Regulog IlvY - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Branched-chain amino acid biosynthesis |
| Effector: | Acetohydroxybutyrate; 2-Acetolactate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - LysR
- By effector - Acetohydroxybutyrate
- By effector - 2-Acetolactate
- By pathway - Branched-chain amino acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 2 | 2 |
| Shewanella putrefaciens CN-32 | 2 | 2 |
| Shewanella sp W3-18-1 | 2 | 2 |
| Shewanella sp ANA-3 | 2 | 2 |
| Shewanella sp MR-4 | 2 | 2 |
| Shewanella sp MR-7 | 2 | 2 |
| Shewanella baltica OS155 | 2 | 2 |
| Shewanella denitrificans OS217 | 2 | 2 |
| Shewanella frigidimarina NCIMB 400 | 2 | 2 |
| Shewanella amazonensis SB2B | 2 | 2 |
| Shewanella loihica PV-4 | 2 | 2 |
| Shewanella pealeana ATCC 700345 | 2 | 2 |
| Shewanella halifaxensis HAW-EB4 | 2 | 2 |
| Shewanella piezotolerans WP3 | 2 | 2 |
| Shewanella sediminis HAW-EB3 | 2 | 2 |
| Shewanella woodyi ATCC 51908 | 2 | 2 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| ilvC |
*
Shewanella oneidensis MR-1 Site: position = -147 score = 5.12548 sequence = ATTGCAAAAAACGCAAT Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Gene: SO_4349: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella putrefaciens CN-32 Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Site: position = -147 score = 5.02076 sequence = GTTGCGAATAATGCAAT Gene: Sputcn32_3615: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella sp W3-18-1 Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Site: position = -147 score = 5.02076 sequence = GTTGCGAATAATGCAAT Gene: Sputw3181_3755: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella sp ANA-3 Site: position = -147 score = 5.20597 sequence = ATTGCATAAAACGCAAT Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Gene: Shewana3_0355: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella sp MR-4 Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Site: position = -147 score = 5.20597 sequence = ATTGCATAAAACGCAAT Gene: Shewmr4_0361: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella sp MR-7 Site: position = -147 score = 5.20597 sequence = ATTGCATAAAACGCAAT Site: position = -116 score = 4.77048 sequence = ATATCATTTTAAGCAAC Gene: Shewmr7_3665: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella baltica OS155 Site: position = -115 score = 4.8752 sequence = ATATCATTTTAAGCAAT Site: position = -146 score = 4.83255 sequence = GTTGCGCATAATGCAAT Gene: Sbal_4032: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella denitrificans OS217 Site: position = -168 score = 4.8752 sequence = ATATCATTTTAAGCAAT Site: position = -199 score = 5.02076 sequence = ATTGCAAAAAACGCAAC Gene: Sden_3415: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella frigidimarina NCIMB 400 Site: position = -115 score = 4.8752 sequence = ATATCATTTTAAGCAAT Site: position = -146 score = 5.13666 sequence = GTTGCATTAATTGCAAC Gene: Sfri_0421: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella amazonensis SB2B Site: position = -149 score = 4.98551 sequence = GTTGCAAAAATTGAAAT Site: position = -118 score = 4.60649 sequence = ATATCATTTTGAGCAAT Gene: Sama_3282: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella loihica PV-4 Site: position = -108 score = 4.8752 sequence = ATATCATTTTAAGCAAT Site: position = -139 score = 5.31926 sequence = ATTGCAAAAAATGCAAT Gene: Shew_0288: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella pealeana ATCC 700345 Site: position = -136 score = 4.64875 sequence = GTTGCAAAAGATGCAAC Site: position = -105 score = 4.8752 sequence = ATATCATTTTAAGCAAT Gene: Spea_0344: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella halifaxensis HAW-EB4 Site: position = -138 score = 5.02076 sequence = ATTGCAAAAAACGCAAC Site: position = -107 score = 4.8752 sequence = ATATCATTTTAAGCAAT Gene: Shal_3945: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella piezotolerans WP3 Site: position = -138 score = 4.72784 sequence = GTTGCACAAAACGCAAC Site: position = -107 score = 4.8752 sequence = ATATCATTTTAAGCAAT Gene: swp_0358: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella sediminis HAW-EB3 Site: position = -139 score = 4.63877 sequence = GTTGCGTAAAGCGCAAT Site: position = -108 score = 4.8752 sequence = ATATCATTTTAAGCAAT Gene: Ssed_4166: Ketol-acid reductoisomerase (EC 1.1.1.86) |
*
Shewanella woodyi ATCC 51908 Site: position = -139 score = 5.16088 sequence = GTTGCAATAATTGCAAT Site: position = -108 score = 4.8752 sequence = ATATCATTTTAAGCAAT Gene: Swoo_0441: Ketol-acid reductoisomerase (EC 1.1.1.86) |
Ketol-acid reductoisomerase (EC 1.1.1.86) |
| CRON 2. | |||||||||||||||||
| ilvY |
*
Shewanella oneidensis MR-1 Site: position = -97 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -66 score = 5.12548 sequence = ATTGCGTTTTTTGCAAT Gene: SO_4350: HTH-type transcriptional regulator IlvY |
*
Shewanella putrefaciens CN-32 Site: position = -134 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -103 score = 5.02076 sequence = ATTGCATTATTCGCAAC Gene: Sputcn32_3616: HTH-type transcriptional regulator IlvY |
*
Shewanella sp W3-18-1 Site: position = -97 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -66 score = 5.02076 sequence = ATTGCATTATTCGCAAC Gene: Sputw3181_3756: HTH-type transcriptional regulator IlvY |
*
Shewanella sp ANA-3 Site: position = -97 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -66 score = 5.20597 sequence = ATTGCGTTTTATGCAAT Gene: Shewana3_0354: HTH-type transcriptional regulator IlvY |
*
Shewanella sp MR-4 Site: position = -97 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -66 score = 5.20597 sequence = ATTGCGTTTTATGCAAT Gene: Shewmr4_0360: HTH-type transcriptional regulator IlvY |
*
Shewanella sp MR-7 Site: position = -97 score = 4.77048 sequence = GTTGCTTAAAATGATAT Site: position = -66 score = 5.20597 sequence = ATTGCGTTTTATGCAAT Gene: Shewmr7_3666: HTH-type transcriptional regulator IlvY |
*
Shewanella baltica OS155 Site: position = -163 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -132 score = 4.83255 sequence = ATTGCATTATGCGCAAC Gene: Sbal_4033: HTH-type transcriptional regulator IlvY |
*
Shewanella denitrificans OS217 Site: position = -92 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -61 score = 5.02076 sequence = GTTGCGTTTTTTGCAAT Gene: Sden_3416: HTH-type transcriptional regulator IlvY |
*
Shewanella frigidimarina NCIMB 400 Site: position = -110 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -79 score = 5.13666 sequence = GTTGCAATTAATGCAAC Gene: Sfri_0420: HTH-type transcriptional regulator IlvY |
*
Shewanella amazonensis SB2B Site: position = -83 score = 4.98551 sequence = ATTTCAATTTTTGCAAC Site: position = -114 score = 4.60649 sequence = ATTGCTCAAAATGATAT Gene: Sama_3283: HTH-type transcriptional regulator IlvY |
*
Shewanella loihica PV-4 Site: position = -101 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -70 score = 5.31926 sequence = ATTGCATTTTTTGCAAT Gene: Shew_0287: HTH-type transcriptional regulator IlvY |
*
Shewanella pealeana ATCC 700345 Site: position = -92 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -61 score = 4.64875 sequence = GTTGCATCTTTTGCAAC Gene: Spea_0343: HTH-type transcriptional regulator IlvY |
*
Shewanella halifaxensis HAW-EB4 Site: position = -93 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -62 score = 5.02076 sequence = GTTGCGTTTTTTGCAAT Gene: Shal_3946: HTH-type transcriptional regulator IlvY |
*
Shewanella piezotolerans WP3 Site: position = -112 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -81 score = 4.72784 sequence = GTTGCGTTTTGTGCAAC Gene: swp_0357: HTH-type transcriptional regulator IlvY |
*
Shewanella sediminis HAW-EB3 Site: position = -132 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -101 score = 4.63877 sequence = ATTGCGCTTTACGCAAC Gene: Ssed_4167: HTH-type transcriptional regulator IlvY |
*
Shewanella woodyi ATCC 51908 Site: position = -87 score = 4.8752 sequence = ATTGCTTAAAATGATAT Site: position = -56 score = 5.16088 sequence = ATTGCAATTATTGCAAC Gene: Swoo_0440: HTH-type transcriptional regulator IlvY |
HTH-type transcriptional regulator IlvY |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |