Propagation of SO1415 regulog to Shewanella oneidensis MR-1
| Source regulog: | SO1415 - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella oneidensis MR-1 |
| Orthologous TF(s) | SO1415 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -163
Score: 5.8 Sequence: ATTCGCGAGTAAAGTCACGAAT
Locus tag: SO1410
|
||||
| SO1410 | -163 | 5.8 | ATTCGCGAGTAAAGTCACGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1410 | ||||
| Ortholog function: periplasmic RmlC-type Cupin domain family protein | ||||
| Shewanella oneidensis MR-1 | SO_1410 | -163 | 5.8 | ATTCGCGAGTAAAGTCACGAAT |
| Shewanella sp MR-4 | Shewmr4_0303 | -149 | 5.8 | ATTCGCGAGTAAAGTCACGAAT |
| Shewanella loihica PV-4 | Shew_0272 | -151 | 6.3 | ATTCGCGAGCCAAGTCACGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0321 | -157 | 5.9 | ATTCGCGACCGAGCTCACGAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3970 | -156 | 6.3 | ATTCGCGACTTGGCTCACGAAT |
| Shewanella sediminis HAW-EB3 | Ssed_4188 | -154 | 6 | ATTCGCGAGCTCTGTCACGAAT |
|
Position: -117
Score: 6.7 Sequence: ATTCAAGAGACGTCTCACGAAT
Locus tag: SO1414
|
||||
| SO1414 | -117 | 6.7 | ATTCAAGAGACGTCTCACGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1414 | ||||
| Ortholog function: Flavocytochrome c flavin subunit | ||||
| Shewanella oneidensis MR-1 | SO_1414 | -117 | 6.7 | ATTCAAGAGACGTCTCACGAAT |
| Shewanella sp MR-4 | Shewmr4_0299 | -116 | 6.4 | ATTCACGAGATAACTCACGAAT |
| Shewanella loihica PV-4 | Shew_0276 | -118 | 6.3 | ATTCGGGACATGGTTCACGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0325 | -119 | 6.8 | ATTCGAGAGCTGACTCACGAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3966 | -119 | 6.7 | ATTCGAGAGCTGCCTCACGAAT |
| Shewanella sediminis HAW-EB3 | Ssed_4184 | -116 | 5.9 | CTTCGAGATCTGCTTCACGAAT |
|
Position: -238
Score: 6.7 Sequence: ATTCGTGAGACGTCTCTTGAAT
Locus tag: SO1415
|
||||
| SO1415 | -238 | 6.7 | ATTCGTGAGACGTCTCTTGAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1415 | ||||
| Ortholog function: Transcriptional regulator, TetR family | ||||
| Shewanella oneidensis MR-1 | SO_1415 | -238 | 6.7 | ATTCGTGAGACGTCTCTTGAAT |
| Shewanella sp MR-4 | Shewmr4_0298 | -241 | 6.4 | ATTCGTGAGTTATCTCGTGAAT |
| Shewanella loihica PV-4 | Shew_0277 | -235 | 6.3 | ATTCGTGAACCATGTCCCGAAT |
| Shewanella pealeana ATCC 700345 | Spea_0326 | -247 | 6.8 | ATTCGTGAGTCAGCTCTCGAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3965 | -247 | 6.7 | ATTCGTGAGGCAGCTCTCGAAT |
| Shewanella sediminis HAW-EB3 | Ssed_4183 | -259 | 5.9 | ATTCGTGAAGCAGATCTCGAAG |