Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Shewanella oneidensis MR-1

Reference regulog properties
Source regulog: ArgR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor (activator)
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella oneidensis MR-1
Orthologous TF(s) SO0769
Regulated genes 24
Built upon 502 sites [see more]
Predicted regulatory interactions in Shewanella oneidensis MR-1
Locus tag Position Score Sequence
Position: -249
Score: 4
Sequence: TAAAAATATATATTCACA
Position: -127
Score: 3.7
Sequence: AGTGAATAAAATAACAAG
Locus tag: SO0275
SO0275 -249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Shewanella oneidensis MR-1 SO_0275 -327 3.6 ATTGAAATATTAAGTAGT
-249 4 TAAAAATATATATTCACA
-127 3.7 AGTGAATAAAATAACAAG
Shewanella putrefaciens CN-32 Sputcn32_3717 -192 4.2 TATGAAAATAAATTAAAA
-57 3.8 AGTGAATAAAATAACAAC
Shewanella sp W3-18-1 Sputw3181_3860 -193 4.2 TATGAAAATAAATTAAAA
-180 4 TAAAAATATATATTCACA
-57 4 AGTGAATAAAATAACAAT
Shewanella sp ANA-3 Shewana3_3905 -357 3.7 ACTGATTTTTCAGTCTTT
-327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-4 Shewmr4_3709 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella sp MR-7 Shewmr7_0236 -327 4.4 ACTGAGTTATTAAGCAGT
-249 4 TAAAAATATATATTCACA
Shewanella baltica OS155 Sbal_4124 -471 4.2 ATTCAATATAAATGCGAA
-252 4 TAAAAATATATATTCACA
-130 3.8 AGTGAATAAAATAACAAC
Shewanella denitrificans OS217 Sden_0250 -235 4.3 AATAAATATGTATTCACA
-214 3.7 ATTGCATAACAATTTGAT
-145 4.3 ATCGAATATAAAAGCACA
Shewanella amazonensis SB2B Sama_0256 -241 3.7 AATAGATATTCATGCATA
Shewanella loihica PV-4 Shew_0202 -249 3.7 TAAAAATATCTATTCAAT
-228 3.5 ATTGCATAATTAGTTTGT
Shewanella pealeana ATCC 700345 Spea_0227 -266 3.8 CCCAAATATATATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_4093 -267 4.5 CCTAAATATATATTCAAA
Shewanella piezotolerans WP3 swp_2055 -266 4.5 CCTAAATATATATTCAAA
Shewanella sediminis HAW-EB3 Ssed_4276 -256 4 GTAAAATATATATTCAAA
-235 3.5 ATTGCATAATTAGTTTGT
Shewanella woodyi ATCC 51908 Swoo_0329 -423 3.5 TTTGCATTCAAAACCAAG
-263 4 GTAAAATATATATTCAAA
Position: -307
Score: 4.1
Sequence: ATTGTGTAGTTATTCATA
Position: -247
Score: 4
Sequence: TCTGACTAAATATGCTAA
Locus tag: SO0617
SO0617 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: astC
Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewanella oneidensis MR-1 SO_0617 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella putrefaciens CN-32 Sputcn32_0645 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp W3-18-1 Sputw3181_3529 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAC
Shewanella sp ANA-3 Shewana3_0610 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-4 Shewmr4_0611 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella sp MR-7 Shewmr7_3419 -307 4.1 ATTGTGTAGTTATTCATA
-247 4 TCTGACTAAATATGCTAA
Shewanella baltica OS155 Sbal_0571 -247 3.9 TATGACTAATTATGCTGA
Shewanella denitrificans OS217 Sden_3193 -300 4.4 TATGGCTATTTATTCACT
-188 4.8 ATTCAATTTATATGCAGA
Shewanella frigidimarina NCIMB 400 Sfri_3299 -301 4.4 TATGTGTAATTATTCACT
-241 3.9 TATGACTATTTATGCTTC
-189 4 TATCAATCTTTATGCAGA
Shewanella amazonensis SB2B Sama_3011 -308 3.8 TATGTCTATTTATCCAAT
-247 4.2 TCTGACTAAATATGCCAT
Shewanella loihica PV-4 Shew_0578 -304 5 TGTGACTATATATTCATA
-244 4 TCTGACTATTTATGCTCA
Shewanella pealeana ATCC 700345 Spea_3516 -281 3.7 CGTGAATAACTAGTAATT
-242 4 TGTGACTATTTATGCTTA
Shewanella halifaxensis HAW-EB4 Shal_3610 -242 4 TATGACTATTTATGCTTA
Shewanella piezotolerans WP3 swp_0747 -244 4 TATGACTAAATATGCTTA
Shewanella sediminis HAW-EB3 Ssed_0809 -246 3.9 TATGACTAATTATGCTTA
Shewanella woodyi ATCC 51908 Swoo_0655 -245 4.2 TATGACTAAATATGCTCT
Position: -195
Score: 4.6
Sequence: TGTGCCTAAAAATGCACC
Locus tag: SO0762
SO0762 -195 4.6 TGTGCCTAAAAATGCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0762
Ortholog function: Isochorismate hydrolase (EC 3.3.2.1)
Shewanella oneidensis MR-1 SO_0762 -195 4.6 TGTGCCTAAAAATGCACC
Shewanella sp ANA-3 Shewana3_3533 -234 3.9 ATTGATTTTAAATAAATA
-195 4.1 ACCGATTAAAAATGCACC
Shewanella sp MR-4 Shewmr4_3363 -248 3.8 CCAGAATTTTAATTTATT
-194 4 TTCGATTAAAAATGCACC
Shewanella sp MR-7 Shewmr7_0590 -265 3.8 CCAGAATTTTAATTTATT
-211 4 TTCGATTAAAAATGCACC
Shewanella frigidimarina NCIMB 400 Sfri_0893 -114 4.4 TCTGAGTGAACATTCATA
Shewanella loihica PV-4 Shew_0845 -139 5 GCTGCATATAAATGCACC
Shewanella pealeana ATCC 700345 Spea_0832 -152 4.9 CGTGCATATAAATGCACC
Shewanella halifaxensis HAW-EB4 Shal_0887 -155 4.4 AACGCATAAAAATGCACC
Shewanella piezotolerans WP3 swp_3957 -151 4.5 TATAAATATAAATGCACC
Shewanella woodyi ATCC 51908 Swoo_0978 -125 4.2 TGCGCATAAAAACTCAAT
Position: -93
Score: 5.5
Sequence: ATTGCATTTTTATTCAGT
Locus tag: SO0769
SO0769 -93 5.5 ATTGCATTTTTATTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism transcriptional regulator ArgR
Shewanella oneidensis MR-1 SO_0769 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3220 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp W3-18-1 Sputw3181_0721 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella sp ANA-3 Shewana3_3510 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-4 Shewmr4_3340 -93 5.5 ATTGCATTTTTATTCAGT
Shewanella sp MR-7 Shewmr7_0613 -93 5.2 ACTGCATTTTTATTCATC
Shewanella baltica OS155 Sbal_0608 -96 5.5 AGTGAATTTTTATTCAAC
Shewanella denitrificans OS217 Sden_0825 -89 5.7 AGTGAATTTTTATTCACT
Shewanella frigidimarina NCIMB 400 Sfri_0640 -104 5.6 AATGAATTTTTATTCAAT
Shewanella amazonensis SB2B Sama_0671 -98 5.3 TCTGCATTTTTATTCACA
Shewanella loihica PV-4 Shew_0866 -95 5.1 CCTGAATTTTTATTCACA
Shewanella pealeana ATCC 700345 Spea_0849 -95 5.5 AATGAATTTTTATTCAGA
Shewanella halifaxensis HAW-EB4 Shal_0902 -95 5.5 AATGAATTTTTATTCACA
Shewanella piezotolerans WP3 swp_4101 -95 5.3 CATGAATTTTTATTCAAT
Shewanella sediminis HAW-EB3 Ssed_0951 -95 5.2 GTTGCATTTTTATTCATA
Shewanella woodyi ATCC 51908 Swoo_1001 -95 5 ATTGCATTCTTATTCATT
Position: -97
Score: 5.1
Sequence: AATGAATTTTTAGTCACA
Locus tag: SO1044
SO1044 -97 5.1 AATGAATTTTTAGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artI
Ortholog function: Arginine ABC transporter, substrate-binding protein
Shewanella oneidensis MR-1 SO_1044 -97 5.1 AATGAATTTTTAGTCACA
-76 4 AAAGCATAATTATTGACA
Shewanella putrefaciens CN-32 Sputcn32_3027 -106 5.1 AATGAATTTATAGTCACA
-85 4 AAAGCATAATTATTGACA
Shewanella sp W3-18-1 Sputw3181_0918 -106 5.1 AATGAATTTATAGTCACA
-85 4 AAAGCATAATTATTGACA
Shewanella sp ANA-3 Shewana3_0882 -254 4.4 AATGAATAAAAAATGATA
-97 4.8 TATGCATTTTTAATCATT
-76 4 AAAGCATAATTATTGAAA
Shewanella sp MR-4 Shewmr4_3053 -254 4.4 AATGAATAAAAAATGATA
-97 5 TATGAATTTTTAATCATT
-76 4 AAAGCATAATTATTGACA
Shewanella sp MR-7 Shewmr7_0919 -97 5 AATGAATTTTTAATCAAA
-76 4 AAAGCATAATTATTGACA
Shewanella baltica OS155 Sbal_3392 -99 5 AATGAATTTTTAATCAAA
-78 4 ACAGCATAATTATTGACA
Shewanella loihica PV-4 Shew_3166 -103 4.6 AATGACTAAATAGTCATT
-82 3.7 ATCGCATAAGTATTGACT
Shewanella pealeana ATCC 700345 Spea_3397 -239 4.7 AGTACATATTTATTCACA
-98 4.3 ATCGAATTTTTACGCATT
-77 4.1 GATGCATAAGTATTGATT
-51 4 TATCAGTTTATAGTCAAT
Shewanella halifaxensis HAW-EB4 Shal_3484 -228 5.3 AATGAATTATTATTCAAC
-98 4.7 CTTGAATTTTTAATCAAA
Shewanella sediminis HAW-EB3 Ssed_3760 -98 5.2 AGTGAATTTATAATCATT
-77 3.7 CACGCATAATTATTGACT
Position: -226
Score: 4.2
Sequence: TTTGCTTGTTAATGCAAG
Locus tag: SO1270
SO1270 -226 4.2 TTTGCTTGTTAATGCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: potF
Ortholog function: Putrescine ABC transporter, substrate-binding protein (TC 3.A.1.11.2)
Shewanella oneidensis MR-1 SO_1270 -226 4.2 TTTGCTTGTTAATGCAAG
Shewanella putrefaciens CN-32 Sputcn32_1094 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp W3-18-1 Sputw3181_3070 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp ANA-3 Shewana3_3097 -376 3.9 TTTGAAATCCCATTCAAT
-164 4.2 ACTGCTTGTTAATGCAAG
Shewanella sp MR-4 Shewmr4_2918 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella sp MR-7 Shewmr7_3000 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella baltica OS155 Sbal_1108 -225 4.7 TTTGAGTGTTAATGCAAT
Shewanella denitrificans OS217 Sden_3031 -266 4.9 AATGAGTTTTTATGCAAA
-163 4.3 GCTGATTAATCATGCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3009 -249 3.9 ACTGAATGATTATTGCAA
-228 4 AGTGATTTTTTAACCAAT
Shewanella amazonensis SB2B Sama_2642 -239 4.1 ACTGATTTTTAAAGCAAG
-177 3.6 ACTGAGTGCATATTAAAA
Shewanella loihica PV-4 Shew_0973 -179 4.2 ATTAGATATAAATTCATA
Shewanella sediminis HAW-EB3 Ssed_1061 -257 3.9 TGTGACTGACGATTCAAT
Position: -83
Score: 4.1
Sequence: ACTCAATCTCTATTCATT
Locus tag: SO1271
SO1271 -83 4.1 ACTCAATCTCTATTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: potG
Ortholog function: Putrescine ABC transporter, ATP-binding protein (TC 3.A.1.11.2)
Shewanella oneidensis MR-1 SO_1271 -226 4.2 TTTGCTTGTTAATGCAAG
Shewanella putrefaciens CN-32 Sputcn32_1095 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp W3-18-1 Sputw3181_3069 -230 4.6 TATGATTGATAATGCAAT
Shewanella sp ANA-3 Shewana3_3096 -376 3.9 TTTGAAATCCCATTCAAT
-164 4.2 ACTGCTTGTTAATGCAAG
Shewanella sp MR-4 Shewmr4_2917 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella sp MR-7 Shewmr7_2999 -427 4.4 AGTGCTTTTAAATTGAAA
-375 4.2 TGTGAAATCTCATTCAAT
-164 4.2 TGTGCTTGTTAATGCAAG
Shewanella baltica OS155 Sbal_1109 -225 4.7 TTTGAGTGTTAATGCAAT
Shewanella denitrificans OS217 Sden_3030 -266 4.9 AATGAGTTTTTATGCAAA
-163 4.3 GCTGATTAATCATGCAAA
Shewanella frigidimarina NCIMB 400 Sfri_3008 -249 3.9 ACTGAATGATTATTGCAA
-228 4 AGTGATTTTTTAACCAAT
Shewanella amazonensis SB2B Sama_2641 -239 4.1 ACTGATTTTTAAAGCAAG
-177 3.6 ACTGAGTGCATATTAAAA
Position: -313
Score: 4.3
Sequence: TTTGCAATAAAAATCACT
Locus tag: SO1325
SO1325 -313 4.3 TTTGCAATAAAAATCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Shewanella oneidensis MR-1 SO_1325 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella putrefaciens CN-32 Sputcn32_1136 -358 4.7 GAAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp W3-18-1 Sputw3181_3028 -358 4.8 GGAGAATAAAAATTCACT
-312 4.3 TTTGCAATAAAAATCACT
Shewanella sp ANA-3 Shewana3_3050 -360 4.5 ATAGAATAACAATTCATT
-339 4 TATAAATTTTTATACATC
-314 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-4 Shewmr4_2872 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella sp MR-7 Shewmr7_2954 -359 4.5 AAAGAATAACAATTCACT
-313 4.3 TTTGCAATAAAAATCACT
Shewanella baltica OS155 Sbal_1178 -361 5.3 AATGAATAATAATTCAAC
-315 4.3 TTTGCAATAAAAATCACT
Shewanella denitrificans OS217 Sden_2790 -359 5.1 AGTGAATATTTAGTCAGT
Shewanella frigidimarina NCIMB 400 Sfri_2951 -358 5 AATGAATATTTAATCATT
-312 4.3 TTTAAAATAAAATTCACT
Shewanella amazonensis SB2B Sama_0857 -362 4.6 TTTGAATAGTTAATCAAT
-316 4 CCTGCAAAAAAAATCACT
Shewanella loihica PV-4 Shew_1032 -324 3.8 TTTGTTAAATAATTCACT
-303 4.3 TATGCAATAAAAATCACT
Shewanella pealeana ATCC 700345 Spea_1013 -354 4.9 AATGCATAAATAGTCACA
-330 4.3 AGTGATTATCATTTCACT
-309 4.3 TCTGCAAAAAAAATCACT
Shewanella halifaxensis HAW-EB4 Shal_1061 -355 4.6 TATGCATAAATAAGCAAA
-331 3.8 AGTGACTACCATTTCACT
-310 4 TCTGCAAGAAAAATCACT
Shewanella piezotolerans WP3 swp_3803 -355 4.4 TCTGCATAATTAGTCAAG
-331 4.3 AGTGACTATCATTTCACT
-310 4.3 TTTGCAATAAAAATCACT
Shewanella sediminis HAW-EB3 Ssed_1126 -301 4.1 CGTGCAAAAAAAATCACT
-127 4.3 ACTCAAATTTTATGCAAT
-62 3.8 GGTGAATATCTATACTAA
Shewanella woodyi ATCC 51908 Swoo_1221 -349 4.7 ACTGCATAAATAAGCAAA
-314 3.9 ATTCATTATATTTGCAAT
Position: -299
Score: 5.2
Sequence: TATGCATATTAATTCAGA
Locus tag: SO1443
SO1443 -299 5.2 TATGCATATTAATTCAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1443
Ortholog function: Conserved hypothetical protein
Shewanella oneidensis MR-1 SO_1443 -299 5.2 TATGCATATTAATTCAGA
Shewanella sp ANA-3 Shewana3_1795 -268 5.2 TATGCATATTAATTCAGA
Shewanella sp MR-7 Shewmr7_1767 -260 5.2 TATGCATATTAATTCAGA
Position: -63
Score: 4.6
Sequence: GCTGAATAAATATTAAAA
Locus tag: SO1915
SO1915 -63 4.6 GCTGAATAAATATTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1915
Ortholog function: Serine protease, subtilase family
Shewanella oneidensis MR-1 SO_1915 -63 4.6 GCTGAATAAATATTAAAA
Shewanella sp ANA-3 Shewana3_1690 -206 4.5 GATGAATGTTTATTGAGT
-61 4.8 ACTGAATAAATATTAAAA
Shewanella baltica OS155 Sbal_2816 -121 4.9 ATTGAATGGTTATTCATA
Position: -25
Score: 4.7
Sequence: AATGAAAATAAATTCAGG
Locus tag: SO1952
SO1952 -25 4.7 AATGAAAATAAATTCAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ggt2
Ortholog function: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Shewanella oneidensis MR-1 SO_1952 -25 4.7 AATGAAAATAAATTCAGG
Shewanella putrefaciens CN-32 Sputcn32_1667 -25 4.7 AATGAAAATAAATTCAGG
Shewanella sp W3-18-1 Sputw3181_2358 -25 4.7 AATGAAAATAAATTCAGG
Shewanella sp ANA-3 Shewana3_2487 -25 4.7 AATGAAAATAAATTCAGG
Shewanella sp MR-4 Shewmr4_2297 -25 4.7 AATGAAAATAAATTCAGG
Shewanella sp MR-7 Shewmr7_2369 -25 4.7 AATGAAAATAAATTCAGG
Shewanella baltica OS155 Sbal_2620 -25 4.7 AATGAAAATAAATTCAGG
Position: -318
Score: 3.5
Sequence: AGTGTGATTAAAATCACA
Position: -278
Score: 3.6
Sequence: CGTGAATGTTTATTTTTT
Position: -204
Score: 3.7
Sequence: TATGTGTAAGCATTCAAT
Position: -155
Score: 3.7
Sequence: TATAAATAAATAAACATT
Position: -106
Score: 3.6
Sequence: ACTGAATGAAAGTGAATC
Locus tag: SO2427
SO2427 -318 3.5 AGTGTGATTAAAATCACA
-278 3.6 CGTGAATGTTTATTTTTT
-204 3.7 TATGTGTAAGCATTCAAT
-155 3.7 TATAAATAAATAAACATT
-106 3.6 ACTGAATGAAAGTGAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Arg)
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO_2427 -383 4.7 TATGCATATTTTTTCATT
-204 3.7 TATGTGTAAGCATTCAAT
Shewanella putrefaciens CN-32 Sputcn32_1940 -478 4 TGTGCATAAAAATTACAT
Shewanella sp W3-18-1 Sputw3181_2068 -517 3.8 GATGCATATTTGTTAATT
-478 4 TGTGCATAAAAATTACAT
Shewanella sp ANA-3 Shewana3_1958 -468 3.9 AATCACAATTTATTCATT
-384 3.8 TATGCATATTTCTCCATA
-106 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-4 Shewmr4_1903 -457 3.5 AATCACAAGTTATTCATT
-373 3.6 CGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella sp MR-7 Shewmr7_2075 -457 3.5 AATCACAAGTTATTCATT
-373 3.9 TGTGCATAATTAATCGAC
-105 3.6 ACTGAATGAAAGTGAATC
Shewanella baltica OS155 Sbal_2044 -487 3.8 TTTGCATAAATATTACAA
-390 3.5 TGTCTATAGCTATGCATT
Shewanella frigidimarina NCIMB 400 Sfri_2416 -451 4.9 TCTGAATAAATACTCAGT
-72 4.2 ACTGACCAATTATTCATA
Shewanella amazonensis SB2B Sama_1838 -201 5.5 TTTGAATAAATATTCAGT
Shewanella loihica PV-4 Shew_2074 -609 4.7 AGTGCATTTAAATTGAAG
Shewanella piezotolerans WP3 swp_2362 -612 4 TGTGATTTTTAATGCCTC
-393 3.7 AGTTCATTTAATATCAAA
Shewanella sediminis HAW-EB3 Ssed_2036 -287 3.6 TTTGCATGGTTAGTGAAA
Shewanella woodyi ATCC 51908 Swoo_2565 -598 3.9 TGTGCATATAATTTAATC
-551 4.3 GATGAGTATATATTGATT
Position: -227
Score: 4
Sequence: AGTCACTTTTTAATCAAA
Position: -40
Score: 4.1
Sequence: TTTGAATAAATAATAACC
Locus tag: SO2706
SO2706 -227 4 AGTCACTTTTTAATCAAA
-40 4.1 TTTGAATAAATAATAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: astB
Ortholog function: Succinylarginine dihydrolase (EC 3.5.3.23)
Shewanella oneidensis MR-1 SO_2706 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
-40 4.1 TTTGAATAAATAATAACC
Shewanella putrefaciens CN-32 Sputcn32_2251 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp W3-18-1 Sputw3181_1757 -225 4 AGTCACTTTTTAATCAAA
-131 4.2 TATGCATTTATCGTCAAA
Shewanella sp ANA-3 Shewana3_1728 -227 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 4.1 TTTGAATAAATAATAACC
Shewanella sp MR-4 Shewmr4_1584 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella sp MR-7 Shewmr7_1659 -227 4 AGTCACTTTTTAATCAAA
-142 3.6 AAGAAATAGTTATGCATT
Shewanella baltica OS155 Sbal_2497 -226 4 AGTCACTTTTTAATCAAA
-132 3.6 TATGCATTTATCGTGAAA
-40 3.6 TATGAACAAATAATAACT
Shewanella denitrificans OS217 Sden_2329 -201 4.7 CTTGCATTTTTAATCACT
Shewanella frigidimarina NCIMB 400 Sfri_2479 -186 5 AGTGCATTTTTAGTCATT
Shewanella amazonensis SB2B Sama_1321 -233 4.1 AGTCACTTTTTAATCAAT
-147 3.6 AAGCAATAGTTATGCAAA
Shewanella pealeana ATCC 700345 Spea_1534 -137 5 TGTGCATTTCAATTCAAA
Shewanella halifaxensis HAW-EB4 Shal_1604 -169 4.1 ATTTCATTAATAGTCATC
-137 4.6 TGTGCATTTTGATGCAAA
Shewanella piezotolerans WP3 swp_1743 -167 4 ATTTCATTATTAGTCATC
-135 4.6 TGTGCATTTTGATGCAAA
Shewanella sediminis HAW-EB3 Ssed_2842 -354 4 ATTTCATTATTAGTCATC
-322 4.3 TGTGCATTTCGATGCAAA
Shewanella woodyi ATCC 51908 Swoo_1802 -236 4 ATTTCATTATTAGTCATC
-204 5 TGTGAATTTCAATGCAAA
Position: -173
Score: 5
Sequence: AATGCATAAAAATACACT
Locus tag: SO2753
SO2753 -173 5 AATGCATAAAAATACACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2753
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26)
Shewanella oneidensis MR-1 SO_2753 -445 4.1 AATGCATTTGCAATCAAC
-173 5 AATGCATAAAAATACACT
Shewanella putrefaciens CN-32 Sputcn32_1602 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp W3-18-1 Sputw3181_2420 -444 4.1 AATGCATTTGCAATCAAC
-193 3.6 AATAACTTATCAATCAGT
-172 5 AGTGCATAAAAATACATT
Shewanella sp ANA-3 Shewana3_2536 -444 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-4 Shewmr4_2373 -445 4.1 AATGCATTTGCAATCAAC
-182 4.2 AGTCAAAATTAATGCATA
-172 5 AATGCATAAAAATACACT
Shewanella sp MR-7 Shewmr7_2445 -445 4.1 AATGCATTTGCAATCAAC
-172 5 AATGCATAAAAATACACT
Shewanella baltica OS155 Sbal_1741 -444 4.1 AATGCATTTGCAATCAAC
-192 3.9 AATAACTTATAAATCACT
-171 4.9 AGTGCATAATAATACACT
Shewanella pealeana ATCC 700345 Spea_2569 -297 4.2 ATTGAATAAAGATGAACT
-215 3.9 CATGATATTTAATTCATC
Shewanella halifaxensis HAW-EB4 Shal_1686 -230 3.9 CATGATATTTAATTCATC
Position: -84
Score: 4.6
Sequence: ATTGAACAAACATTCAAA
Position: -60
Score: 4.6
Sequence: CTTGAATGATCATTCAAA
Locus tag: SO3392
SO3392 -84 4.6 ATTGAACAAACATTCAAA
-60 4.6 CTTGAATGATCATTCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3392
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family
Shewanella oneidensis MR-1 SO_3392 -84 4.6 ATTGAACAAACATTCAAA
-60 4.6 CTTGAATGATCATTCAAA
Shewanella putrefaciens CN-32 Sputcn32_2720 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp W3-18-1 Sputw3181_1292 -84 4.5 TTTGAACAAACATTCAAA
-60 4.7 CTTGAATGTTCATTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp ANA-3 Shewana3_1159 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4 CTTGAATGCACATTCAAG
Shewanella sp MR-4 Shewmr4_1158 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
Shewanella sp MR-7 Shewmr7_1229 -84 4.5 TTTGAACAAACATTCAAA
-60 3.9 CTTGAATGATCGTTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella baltica OS155 Sbal_1249 -84 4.9 TTTGAATGAACATTCAAA
-33 4.2 CTTGAATGCATATTCAAG
Shewanella denitrificans OS217 Sden_1230 -81 4.7 TTTGAAAAATTATTCAAA
-58 4.2 CTTGAATGAATGTTCAAA
-31 4 CTTGAATGCACATTCAAG
Shewanella frigidimarina NCIMB 400 Sfri_1089 -61 4.4 CTTGAATGTGCATTCAAT
-33 4.2 CTTGAATGCATATTCAAG
Shewanella amazonensis SB2B Sama_2407 -85 4.5 TTTGAATGTATGTTCAAA
-61 4 CTTGAATGTATGTTCAAG
-34 3.7 TTTGAATGCCTGTTCAAA
Shewanella loihica PV-4 Shew_3098 -83 4.2 TTTGAATGAACGTTCAAA
Shewanella piezotolerans WP3 swp_0975 -83 4.5 TTTGAATGTTTGTTCAAA
-59 4.8 CTTGAATGATTATTCAAA
-32 4.4 CTTGAATGTTCATTCAAG
Shewanella sediminis HAW-EB3 Ssed_3644 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Shewanella woodyi ATCC 51908 Swoo_4055 -83 4.5 TTTGAATGTTTGTTCAAA
-59 3.9 CTTGAATGATCGTTCAAA
-32 4.4 CTTGAATGAACATTCAAG
Position: -71
Score: 4.6
Sequence: ACTGTATATAAAATCAGT
Locus tag: SO3462
SO3462 -71 4.6 ACTGTATATAAAATCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella putrefaciens CN-32 Sputcn32_2771 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp W3-18-1 Sputw3181_1241 -71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp ANA-3 Shewana3_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-4 Shewmr4_1104 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella sp MR-7 Shewmr7_1170 -71 5.1 ACTGTATATAAATTCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella baltica OS155 Sbal_3153 -137 3.6 CATGCATAATCAGTTAAT
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella denitrificans OS217 Sden_1151 -95 3.7 ACTCAAAATTAACTCAGC
-70 3.9 ACTGTATAAAAAACCAGT
-48 3.7 ACTGTTTATCAATACAGT
Shewanella frigidimarina NCIMB 400 Sfri_1043 -112 3.6 GATGATAAAATAGTCAAC
-71 4.6 ACTGTATATAAAATCAGT
-49 3.7 ACTGTTTATCAATACAGT
Shewanella amazonensis SB2B Sama_1026 -72 3.8 ACTGTACAAAAAATCAGT
-50 3.7 ACTGTGTATCAATACAGT
Shewanella loihica PV-4 Shew_1196 -61 5.1 ACTGTATAAAAATTCAGT
Shewanella sediminis HAW-EB3 Ssed_1281 -61 4.6 ACTGTATATAAAATCAGT
Position: -79
Score: 5.4
Sequence: GGTGAATTAAAATGCAAT
Locus tag: SO4245
SO4245 -79 5.4 GGTGAATTAAAATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argA
Ortholog function: N-acetylglutamate synthase (EC 2.3.1.1)
Shewanella oneidensis MR-1 SO_4245 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella putrefaciens CN-32 Sputcn32_0465 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp W3-18-1 Sputw3181_0368 -117 3.9 AGTGAGAATAAATTCTTT
-96 5.5 TGTGAATTAAAATGCAAT
Shewanella sp ANA-3 Shewana3_3767 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-4 Shewmr4_3594 -141 4.3 TTTGAAAATATAAGCACT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella sp MR-7 Shewmr7_0362 -100 3.8 AATGAGAATAAATTCTTT
-79 5.4 GGTGAATTAAAATGCAAT
Shewanella baltica OS155 Sbal_0380 -118 3.8 AATGAGAATAAATTCTTT
-97 5.5 TGTGAATTAAAATGCAAT
Shewanella denitrificans OS217 Sden_0329 -212 4.3 TCTGTAATAAAATGCACT
-144 5.4 ACTGCATTAAAATGCAAT
-123 4 ATTGCGTTTTTATTGATG
Shewanella frigidimarina NCIMB 400 Sfri_3825 -130 4.2 AGTGAAATAAAATGCTTT
-109 5.6 AGTGAATTAAAATGCAAT
Shewanella amazonensis SB2B Sama_0330 -86 5.7 TGTGAATTTAAATTCACT
Shewanella loihica PV-4 Shew_3478 -80 5.5 TGTGAATTTAAATGCAAT
Shewanella pealeana ATCC 700345 Spea_3834 -120 4.3 AGTGAAAATAAATGCTTT
-99 5.6 AATGAATTTAAATGCAAT
-34 4.4 GGTGAATATCTATTTATT
Shewanella halifaxensis HAW-EB4 Shal_0432 -100 5.6 AATGAATTTAAATGCACT
Shewanella piezotolerans WP3 swp_2207 -110 3.7 AGTGATAATAAATGCTTT
-89 5.4 ATTGCATTAAAATGCAAT
Shewanella sediminis HAW-EB3 Ssed_0388 -199 4.9 ACTCAATAAAAATTCACA
-88 5.3 TTTGCATTAAAATGCAAT
Shewanella woodyi ATCC 51908 Swoo_4558 -198 4.9 TGTGAAAAAATATTCAGT
-84 5.6 AGTGAATTAAAATGCAAT
Position: -216
Score: 4.2
Sequence: CGTGATTATTAAATCACA
Locus tag: SO4347
SO4347 -216 4.2 CGTGATTATTAAATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvG
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Shewanella oneidensis MR-1 SO_4347 -216 4.2 CGTGATTATTAAATCACA
Shewanella putrefaciens CN-32 Sputcn32_3614 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp W3-18-1 Sputw3181_3754 -214 4.2 CGTGATTATTAAATCACA
Shewanella sp ANA-3 Shewana3_0356 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-4 Shewmr4_0362 -201 4.5 AGTGATTATTAAATCACA
Shewanella sp MR-7 Shewmr7_3664 -219 4.5 AGTGATTATTAAATCACA
Shewanella denitrificans OS217 Sden_3414 -153 4.6 AGTGATTATTAAGTCACA
Shewanella frigidimarina NCIMB 400 Sfri_0422 -202 4.6 AGTGATTATTAAGTCACA
Shewanella amazonensis SB2B Sama_3281 -157 4.5 AGTGATTATTAAATCACA
Shewanella loihica PV-4 Shew_0289 -166 4.5 AGTGATTATTAAATCACA
Shewanella pealeana ATCC 700345 Spea_0345 -181 4.2 CGTGATTATTAAATCACA
Shewanella halifaxensis HAW-EB4 Shal_3944 -193 4.2 CGTGATTATTAAATCACA
Shewanella piezotolerans WP3 swp_0359 -189 4.2 CGTGATTATTAAATCACA
Shewanella woodyi ATCC 51908 Swoo_0442 -190 4.2 CGTGATTATTAAATCACA
Position: -286
Score: 5.5
Sequence: TGTGAATATATATGCAAT
Locus tag: SO4466
SO4466 -286 5.5 TGTGAATATATATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mcp(Arg)
Ortholog function: Methyl-accepting chemotaxis protein
Shewanella oneidensis MR-1 SO_4466 -286 5.5 TGTGAATATATATGCAAT
Shewanella putrefaciens CN-32 Sputcn32_0380 -332 5.3 GATGAATTTATATGCATT
Shewanella sp W3-18-1 Sputw3181_0230 -332 5.3 GATGAATTTATATGCATT
Shewanella sp ANA-3 Shewana3_0264 -289 5.1 TTTGAATTTGTATTCAAT
Shewanella sp MR-7 Shewmr7_3758 -274 5.5 TATGAATTTATATTCATT
-253 4.8 TGTGATTTTCAATTCAAT
Shewanella baltica OS155 Sbal_0274 -332 5.2 GATGAATTTATATGCATA
-311 4.5 AATAAATTTCAATGCATT
Position: -112
Score: 4.1
Sequence: GAGGGATTTAAATTCACA
Position: -106
Score: 4.2
Sequence: TTTAAATTCACATTCAGT
Locus tag: SO4732
SO4732 -112 4.1 GAGGGATTTAAATTCACA
-106 4.2 TTTAAATTCACATTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4732
Ortholog function: Conserved hypothetical protein
Shewanella oneidensis MR-1 SO_4732 -106 4.2 TTTAAATTCACATTCAGT
Shewanella putrefaciens CN-32 Sputcn32_3915 -112 5.3 GATGCATTTAAATTCACA
Shewanella sp W3-18-1 Sputw3181_0037 -112 5.3 GATGCATTTAAATTCACA
Shewanella sp ANA-3 Shewana3_4118 -106 4.2 TTTAAATTCACATTCAGT
Shewanella sp MR-4 Shewmr4_3913 -106 4.2 TTTAAATTCACATTCAGT
Shewanella sp MR-7 Shewmr7_4005 -106 4.2 TTTAAATTCACATTCAGT
Shewanella baltica OS155 Sbal_0045 -112 4.8 AACGCATTTAAATTCACA
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