Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing omcA gene

Properties
Regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Built upon 2713 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: -189
Score: 3.93967
Sequence: CGGCGTGACACTCATCACACTT
Locus tag: Sama_1213
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Sama_1212
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Sama_1211
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Sama_1210
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -189 3.9 CGGCGTGACACTCATCACACTT Sama_1213
Shewanella baltica OS155
Position: -304
Score: 3.76559
Sequence: TTATGTGACAAAAATACCAATG
Position: -181
Score: 4.77529
Sequence: AAACGTGATCAACATCACGCTT
Locus tag: Sbal_1593
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Sbal_1592
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Sbal_1591
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Sbal_1590
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -304 3.8 TTATGTGACAAAAATACCAATG Sbal_1593
-181 4.8 AAACGTGATCAACATCACGCTT
Shewanella halifaxensis HAW-EB4
Position: -305
Score: 4.5247
Sequence: TTATGTGATAAATATCTCAACT
Position: -184
Score: 4.56732
Sequence: AAACTTGACACAGATCACACTT
Locus tag: Shal_2778
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shal_2779
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shal_2780
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shal_2781
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -305 4.5 TTATGTGATAAATATCTCAACT Shal_2778
-184 4.6 AAACTTGACACAGATCACACTT
Shewanella loihica PV-4
Position: -260
Score: 4.45471
Sequence: TTATGTGACAGATATCTCAATC
Position: -170
Score: 5.28415
Sequence: CAACGTGATCTAGATCACATAT
Locus tag: Shew_2519
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shew_2520
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shew_2521
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shew_2522
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -260 4.5 TTATGTGACAGATATCTCAATC Shew_2519
-170 5.3 CAACGTGATCTAGATCACATAT
Shewanella oneidensis MR-1
Position: -339
Score: 3.80688
Sequence: TTATGTGACAAAAATCTCTATG
Locus tag: SO1782
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: SO1781
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: SO1780
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: SO1779
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -339 3.8 TTATGTGACAAAAATCTCTATG SO1782
Shewanella pealeana ATCC 700345
Position: -286
Score: 4.12663
Sequence: TTATGTGACAAAACTCTCAACT
Position: -197
Score: 5.43359
Sequence: AAGTGTGATACGCATCACATAA
Locus tag: Spea_2692
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Spea_2693
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Spea_2694
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Spea_2695
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -286 4.1 TTATGTGACAAAACTCTCAACT Spea_2692
-197 5.4 AAGTGTGATACGCATCACATAA
Shewanella piezotolerans WP3
Position: -308
Score: 4.16651
Sequence: TTATGTGACAAATCTCTCAACT
Position: -185
Score: 4.56511
Sequence: CAGTGTGACGTAGATCACGCTT
Locus tag: swp_3272
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: swp_3273
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: swp_3274
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: swp_3275
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -308 4.2 TTATGTGACAAATCTCTCAACT swp_3272
-185 4.6 CAGTGTGACGTAGATCACGCTT
Shewanella sediminis HAW-EB3
Position: -291
Score: 4.01107
Sequence: TTATGTGACAAAAGTCTCAACT
Position: -174
Score: 4.76284
Sequence: TAGCGTGACCAAGATCACACTT
Locus tag: Ssed_1530
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Ssed_1529
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Ssed_1528
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Ssed_1527
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -291 4 TTATGTGACAAAAGTCTCAACT Ssed_1530
-174 4.8 TAGCGTGACCAAGATCACACTT
Shewanella sp ANA-3
Position: -295
Score: 4.35955
Sequence: TTATGTGACAAAAATCTCAATG
Position: -172
Score: 4.26694
Sequence: AAGTGAGAACAAGATCACACTT
Locus tag: Shewana3_2672
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewana3_2673
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shewana3_2674
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shewana3_2675
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -295 4.4 TTATGTGACAAAAATCTCAATG Shewana3_2672
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-4
Position: -295
Score: 4.35955
Sequence: TTATGTGACAAAAATCTCAATG
Position: -172
Score: 4.26694
Sequence: AAGTGAGAACAAGATCACACTT
Locus tag: Shewmr4_2506
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewmr4_2507
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shewmr4_2508
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shewmr4_2509
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -295 4.4 TTATGTGACAAAAATCTCAATG Shewmr4_2506
-172 4.3 AAGTGAGAACAAGATCACACTT
Shewanella sp MR-7
Position: -295
Score: 4.35955
Sequence: TTATGTGACAAAAATCTCAATG
Position: -172
Score: 4.26694
Sequence: AAGTGAGAACAAGATCACACTT
Locus tag: Shewmr7_2574
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewmr7_2575
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shewmr7_2576
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shewmr7_2577
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
mtrD-mtrE-mtrF-omcA -295 4.4 TTATGTGACAAAAATCTCAATG Shewmr7_2574
-172 4.3 AAGTGAGAACAAGATCACACTT
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