Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus halodurans C-125

Type Regulator Effector Pathway Genes Sites
TF AcoR Acetoin Acetoin utilization 1 1
TF AraR Arabinose Arabinose utilization 5 7
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 3 7
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 3
TF AseR Arsenite Arsenic resistance 1 1
TF BirA Biotin Biotin biosynthesis 4 5
TF BkdR Branched-chain amino acid degradation 1 1
TF BltR Multidrug resistance 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 54 69
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 39 64
TF CsoR Copper ion, (Cu+) Copper resistance 2 2
TF CtsR Heat shock Heat shock response 2 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 5 5
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 1 2
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 4 5
TF Fnr Oxygen Anaerobic metabolism 3 5
TF Fur Iron ion, (Fe2+) Iron homeostasis 11 24
TF GamR Glucosamine-6-phosphate Glucosamine utilization 3 7
TF GanR Beta-galactosides Galactan utilization 1 1
TF GlcR 1 1
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 3 7
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GmuR Glucomannan utilization 1 1
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 3
TF IolR1 Inositol utilization 2 3
TF IolR2 Inositol utilization 2 2
TF KipR Sporulation 1 1
TF LexA DNA damage SOS response 9 15
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 1 1
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 1 9
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MsmR Alpha-galactosides Alpha-galactosides utilization 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 3
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 3
TF NsrR Nitric oxide Nitrosative stress response 2 4
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 5 12
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 6 6
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 1 3
TF RmgR Rhamnogalacturonides utilization 4 7
TF RocR Ornithine; L-citrulline Arginine degradation; Ornithine degradation 2 4
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF SinR SinI, antirepressor protein Biofilm formation 1 2
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 35 67
TF TreR Trehalose-6-phosphate Trehalose utilization 2 2
TF UxuR Aldotetraouronic acid Glucuronate utilization 2 2
TF XylR Xylose Xylose utilization 4 6
TF YdfD/YisV Metabolite transport 1 1
TF YdfF 2 2
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YhgD 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 2 3
TF YvcP YvcQ, sensor histidine kinase Bacitracin resistance 1 1
TF YybA Polyamine homeostasis 2 4
TF YybR/YdeP Multidrug resistance 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 5
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