Propagation of CodY regulog to Bacillus halodurans C-125

Reference regulog properties
Source regulog:	CodY - Bacillales
Regulator type:	Transcription factor
Regulator family:	CodY
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Guanosine triphosphate; Branched-chain amino acids
Phylum:	Firmicutes
Propagated regulon:
Target genome	Bacillus halodurans C-125
Orthologous TF(s)	BH2462
Regulated genes	39

Built upon 445 sites [see more]

Predicted regulatory interactions in *Bacillus halodurans C-125*
	Locus tag	Position	Score	Sequence
Position: -46 Score: 4.5 Sequence: ATTTGTCAAAATATT Locus tag: BH0030
	BH0030	-46	4.5	ATTTGTCAAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppC
Ortholog function: Oligopeptide ABC transporter permease
Bacillus halodurans C-125	BH0030	-46	4.5	ATTTGTCAAAATATT
Oceanobacillus iheyensis HTE831	OB3067	-112	4.5	TATTTTTACAAAATT

Position: -295 Score: 4.5 Sequence: AATATTTTGACAAAT Position: 4 Score: 4.4 Sequence: AAGTGTCTAAAAATT Locus tag: BH0031
	BH0031	-295	4.5	AATATTTTGACAAAT
		4	4.4	AAGTGTCTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA2
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125	BH0031	-295	4.5	AATATTTTGACAAAT
Oceanobacillus iheyensis HTE831	OB0463	-122	4.4	AATTGAAAGAAAATT
Oceanobacillus iheyensis HTE831	OB3071	-186	4.8	AATTTTCGGAATATT
		-87	4.7	AATTTTTTAAAAAAT
		-86	4.5	ATTTTTTAAAAAATA

Position: -32 Score: 4.3 Sequence: TATTTTCAAAATAGT Locus tag: BH0347
	BH0347	-32	4.3	TATTTTCAAAATAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus halodurans C-125	BH0347	-32	4.3	TATTTTCAAAATAGT
Bacillus clausii KSM-K16	ABC3661	-245	4.5	TATTTTTGGAAAATT
		-55	4.5	AATAATTTTAAAATT

Position: 26 Score: 4.4 Sequence: ATTTTTCAGTAAATA Locus tag: BH0858
	BH0858	26	4.4	ATTTTTCAGTAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus pumilus SAFR-032	BPUM_1860	-62	4.9	TTTTTTCAGAAAATT
Bacillus halodurans C-125	BH0858	26	4.4	ATTTTTCAGTAAATA
Oceanobacillus iheyensis HTE831	OB0994	-56	4.4	TATTATCAGATTATT

Position: -125 Score: 4.5 Sequence: TATTTTCTAAAGATT Locus tag: BH0916
	BH0916	-125	4.5	TATTTTCTAAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: chi
Ortholog function: Chitinase (EC 3.2.1.14)
Bacillus halodurans C-125	BH0916	-125	4.5	TATTTTCTAAAGATT
Bacillus clausii KSM-K16	ABC0646	-117	4.5	TATTTTTCGAAAATT

Position: -149 Score: 4.7 Sequence: AATTTTTTAAAAAAT Position: -148 Score: 4.7 Sequence: ATTTTTTAAAAAATT Locus tag: BH1185
	BH1185	-149	4.7	AATTTTTTAAAAAAT
		-148	4.7	ATTTTTTAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpr
Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family
Bacillus subtilis subsp. subtilis str. 168	BSU09990	-90	4.4	ATTTATTAAAAAATT
Bacillus licheniformis DSM 13	BLi01078	-93	4.7	ATTTTTTAAAAAATT
Anoxybacillus flavithermus WK1	Aflv_2290	-87	4.4	ATTTATTAAAAAATT
Bacillus halodurans C-125	BH1185	-148	4.7	ATTTTTTAAAAAATT

Position: -324 Score: 4 Sequence: AATTTTTATAAAAAG Position: -86 Score: 4 Sequence: ACTTTTCAGATAGTT Locus tag: BH1627
	BH1627	-324	4	AATTTTTATAAAAAG
		-86	4	ACTTTTCAGATAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168	BSU11870	-297	4.6	AATTATTAGAAATTT
		-214	4.3	AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_011930	-314	4.6	AATTATTAGAAATTT
Bacillus pumilus SAFR-032	BPUM_1119	-297	4.4	AAAATACAGAAAATT
		-287	4.1	AAATTTCAATTAATT
Bacillus licheniformis DSM 13	BLi01289	-164	4	AACAATCAGAATATT
Anoxybacillus flavithermus WK1	Aflv_2067	-228	4.4	ATTTTTCGGAAAATA
		-200	4.6	AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426	GK0866	-341	4.5	AAATTTAAAAAAATT
Bacillus cereus ATCC 14579	BC4253	-344	4.4	AATTTTTTAATAAAT
Paenibacillus sp. JDR-2	Pjdr2_4798	-6	4.4	AACTTTATGAAAATT

Position: -94 Score: 4.5 Sequence: AAATGTCAGAAAAAT Locus tag: BH1728
	BH1728	-94	4.5	AAATGTCAGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltA
Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Bacillus halodurans C-125	BH1728	-94	4.5	AAATGTCAGAAAAAT
Oceanobacillus iheyensis HTE831	OB3099	-202	4.6	AAATTTCAAAAAATA

Position: -123 Score: 4.4 Sequence: ATTTATCAGTAAATT Locus tag: BH1831
	BH1831	-123	4.4	ATTTATCAGTAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutP
Ortholog function: L-lactate permease
Anoxybacillus flavithermus WK1	Aflv_2011	-121	4.4	AAATTTTTAAATATT
Bacillus halodurans C-125	BH1831	-123	4.4	ATTTATCAGTAAATT

Position: -27 Score: 4.2 Sequence: AATTTTCAGAGAAGA Locus tag: BH2156
	BH2156	-27	4.2	AATTTTCAGAGAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybgE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus subtilis subsp. subtilis str. 168	BSU02390	-118	4.9	AATATTCTGAAATTT
		-38	4.6	AATATTTAAACAATT
Bacillus amyloliquefaciens FZB42	RBAM_002760	-152	4.4	AAAATTTTGATAATT
Bacillus amyloliquefaciens FZB42	RBAM_035750	-48	4.3	TATTTTCAAATAAGT
Bacillus pumilus SAFR-032	BPUM_3500	-226	4.4	AATTGTCAGATTAAT

Position: -232 Score: 4.3 Sequence: TATTTTCAGAATTTA Locus tag: BH2206
	BH2206	-232	4.3	TATTTTCAGAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus cereus ATCC 14579	BC1252	-231	4.4	ATTTTTCTGTAAAAT
Bacillus halodurans C-125	BH2206	-232	4.3	TATTTTCAGAATTTA

Position: -121 Score: 4.7 Sequence: ATTTGTCAAAAAATT Locus tag: BH2374
	BH2374	-121	4.7	ATTTGTCAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH2374
Ortholog function: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3)
Anoxybacillus flavithermus WK1	Aflv_1525	-113	5	ATTTTTCAAAAAATT
Bacillus cereus ATCC 14579	BC3774	-214	4.5	AAAATTCAGAAAAAT
Bacillus halodurans C-125	BH2374	-121	4.7	ATTTGTCAAAAAATT

Position: -89 Score: 5 Sequence: AATTTTTTTAAAATT Locus tag: BH2773
	BH2773	-89	5	AATTTTTTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spo0A
Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A)
Bacillus pumilus SAFR-032	BPUM_2154	-111	4.4	ATTATTCGGAAAATT
Anoxybacillus flavithermus WK1	Aflv_0953	-120	4.6	TATTTTATGAAAAAT
Geobacillus kaustophilus HTA426	GK2387	-96	4.7	TATTTTTTGAAAAAT
Bacillus cereus ATCC 14579	BC4170	-84	4.7	AATTTTCACACAATT
Bacillus halodurans C-125	BH2773	-89	5	AATTTTTTTAAAATT

Position: 15 Score: 4.2 Sequence: ATTATTGAAAAAATT Locus tag: BH3056
	BH3056	15	4.2	ATTATTGAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: leuC
Ortholog function: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Bacillus subtilis subsp. subtilis str. 168	BSU28260	-633	4.1	ATTAATAAAAAAATT
		-544	4.7	AATTGTCTAATAATT
Bacillus amyloliquefaciens FZB42	RBAM_025320	-464	4.7	AATTGTCTAATAATT
Oceanobacillus iheyensis HTE831	OB2618	-508	4.1	AATAATTAAAAAACT

Position: -111 Score: 4.5 Sequence: TATTTTTTGACTATT Locus tag: BH3062
	BH3062	-111	4.5	TATTTTTTGACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvD
Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9)
Bacillus subtilis subsp. subtilis str. 168	BSU21870	-64	4.5	AATAAACTGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_020010	-56	4.5	AATAAACTGAAAATT
Bacillus pumilus SAFR-032	BPUM_1922	-83	4.5	AATAAACAGAAAATT
Bacillus licheniformis DSM 13	BLi02324	-51	4.8	AATATTCAGAATATA
Bacillus halodurans C-125	BH3062	-217	4.3	AATAGTCAAATTATT
		-111	4.5	TATTTTTTGACTATT

Position: -65 Score: 4.3 Sequence: AATATTCAAAATAAA Locus tag: BH3201
	BH3201	-65	4.3	AATATTCAAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus halodurans C-125	BH3201	-65	4.3	AATATTCAAAATAAA
Bacillus clausii KSM-K16	ABC3255	-175	4.3	CTTTTTTAGAAAATT

Position: -47 Score: 4.3 Sequence: AAAATTCTGATAATA Locus tag: BH3406
	BH3406	-47	4.3	AAAATTCTGATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Conserved hypothetical protein
Bacillus subtilis subsp. subtilis str. 168	BSU32090	-36	4.9	TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42	RBAM_029140	-34	4.9	TATTATCAGAAAATT
Geobacillus kaustophilus HTA426	GK2951	-54	4.4	TTTTTACAGAAAATT
Bacillus halodurans C-125	BH3406	-47	4.3	AAAATTCTGATAATA

Position: -240 Score: 4.5 Sequence: AATTTTCGAAAAATA Position: -62 Score: 5 Sequence: AATTTTCTGAATATA Locus tag: BH3439
	BH3439	-240	4.5	AATTTTCGAAAAATA
		-62	5	AATTTTCTGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3439
Ortholog function: Sodium/proline symporter
Bacillus licheniformis DSM 13	BLi03425	-56	5	AATTATTAGAAAATT
Anoxybacillus flavithermus WK1	Aflv_2428	-166	4.5	ATTTTTTAAAATATT
Bacillus cereus ATCC 14579	BC4071	-70	4.5	AATTTATTGATAATT
Bacillus halodurans C-125	BH3439	-240	4.5	AATTTTCGAAAAATA
		-62	5	AATTTTCTGAATATA
Bacillus clausii KSM-K16	ABC1961	-101	4.6	TTTTTTCAGAAAATA

Position: -134 Score: 4.8 Sequence: AATTTTCAGAAAATC Locus tag: BH3488
	BH3488	-134	4.8	AATTTTCAGAAAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadN
Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Bacillus amyloliquefaciens FZB42	RBAM_029920	-132	4.5	AAATTTAAAAAAATT
Bacillus licheniformis DSM 13	BLi03466	-132	4.4	AAAATTCAGAAATTT
Bacillus cereus ATCC 14579	BC5004	-141	4.5	TTATTTCAGAAAATT
Bacillus halodurans C-125	BH3488	-134	4.8	AATTTTCAGAAAATC

Position: -174 Score: 4.8 Sequence: AATATTTATAAAATT Locus tag: BH3819
	BH3819	-174	4.8	AATATTTATAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelB
Ortholog function: Pectate lyase precursor (EC 4.2.2.2)
Bacillus licheniformis DSM 13	BLi04129	-151	4.7	ATTATTCAGACAATT
Bacillus halodurans C-125	BH3819	-183	4.5	TATATTCATAATATT
		-174	4.8	AATATTTATAAAATT

Position: -258 Score: 4.4 Sequence: TATTTTTTGAAAAAA Locus tag: BH3820
	BH3820	-258	4.4	TATTTTTTGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032	BPUM_0421	-252	5	AATTTTCTAAAAATA
		-230	4.4	AATAGTATGAAAATA
Anoxybacillus flavithermus WK1	Aflv_1459	-140	4.9	ATTTTTCTGACAATT
Bacillus cereus ATCC 14579	BC1389	-88	4.6	AAAATTCAGAAAATA
Bacillus halodurans C-125	BH3820	-258	4.4	TATTTTTTGAAAAAA
Bacillus clausii KSM-K16	ABC3908	-77	4.3	AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831	OB0021	-36	4.9	AATTTTCTGAAAAAA

Position: -114 Score: 4.6 Sequence: AATTTTATAAAAAAT Locus tag: BH3823
	BH3823	-114	4.6	AATTTTATAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pta
Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8)
Bacillus cereus ATCC 14579	BC5387	-124	4.9	AATTTTATGAAAATA
Bacillus halodurans C-125	BH3823	-114	4.6	AATTTTATAAAAAAT

Position: -51 Score: 4.5 Sequence: TATTATTTGAATATT Locus tag: BH4033
	BH4033	-51	4.5	TATTATTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glyP
Ortholog function: Sodium/glycine symporter GlyP
Bacillus licheniformis DSM 13	BLi00817	-52	4.6	AACTTTCAGAATATT
Bacillus halodurans C-125	BH4033	-51	4.5	TATTATTTGAATATT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CodY regulog to Bacillus halodurans C-125

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --