Propagation of CodY regulog to Bacillus halodurans C-125
| Source regulog: | CodY - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | CodY |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Guanosine triphosphate; Branched-chain amino acids |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus halodurans C-125 |
| Orthologous TF(s) | BH2462 |
| Regulated genes | 39 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -46
Score: 4.5 Sequence: ATTTGTCAAAATATT
Locus tag: BH0030
|
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| BH0030 | -46 | 4.5 | ATTTGTCAAAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dppC | ||||
| Ortholog function: Oligopeptide ABC transporter permease | ||||
| Bacillus halodurans C-125 | BH0030 | -46 | 4.5 | ATTTGTCAAAATATT |
| Oceanobacillus iheyensis HTE831 | OB3067 | -112 | 4.5 | TATTTTTACAAAATT |
|
Position: -295
Score: 4.5 Sequence: AATATTTTGACAAAT
Position: 4
Score: 4.4 Sequence: AAGTGTCTAAAAATT
Locus tag: BH0031
|
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| BH0031 | -295 | 4.5 | AATATTTTGACAAAT | |
| 4 | 4.4 | AAGTGTCTAAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppA2 | ||||
| Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) | ||||
| Bacillus halodurans C-125 | BH0031 | -295 | 4.5 | AATATTTTGACAAAT |
| Oceanobacillus iheyensis HTE831 | OB0463 | -122 | 4.4 | AATTGAAAGAAAATT |
| Oceanobacillus iheyensis HTE831 | OB3071 | -186 | 4.8 | AATTTTCGGAATATT |
| -87 | 4.7 | AATTTTTTAAAAAAT | ||
| -86 | 4.5 | ATTTTTTAAAAAATA | ||
|
Position: -32
Score: 4.3 Sequence: TATTTTCAAAATAGT
Locus tag: BH0347
|
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| BH0347 | -32 | 4.3 | TATTTTCAAAATAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppA | ||||
| Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) | ||||
| Bacillus halodurans C-125 | BH0347 | -32 | 4.3 | TATTTTCAAAATAGT |
| Bacillus clausii KSM-K16 | ABC3661 | -245 | 4.5 | TATTTTTGGAAAATT |
| -55 | 4.5 | AATAATTTTAAAATT | ||
|
Position: 26
Score: 4.4 Sequence: ATTTTTCAGTAAATA
Locus tag: BH0858
|
||||
| BH0858 | 26 | 4.4 | ATTTTTCAGTAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yocS | ||||
| Ortholog function: Sodium-dependent transporter | ||||
| Bacillus pumilus SAFR-032 | BPUM_1860 | -62 | 4.9 | TTTTTTCAGAAAATT |
| Bacillus halodurans C-125 | BH0858 | 26 | 4.4 | ATTTTTCAGTAAATA |
| Oceanobacillus iheyensis HTE831 | OB0994 | -56 | 4.4 | TATTATCAGATTATT |
|
Position: -125
Score: 4.5 Sequence: TATTTTCTAAAGATT
Locus tag: BH0916
|
||||
| BH0916 | -125 | 4.5 | TATTTTCTAAAGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: chi | ||||
| Ortholog function: Chitinase (EC 3.2.1.14) | ||||
| Bacillus halodurans C-125 | BH0916 | -125 | 4.5 | TATTTTCTAAAGATT |
| Bacillus clausii KSM-K16 | ABC0646 | -117 | 4.5 | TATTTTTCGAAAATT |
|
Position: -149
Score: 4.7 Sequence: AATTTTTTAAAAAAT
Position: -148
Score: 4.7 Sequence: ATTTTTTAAAAAATT
Locus tag: BH1185
|
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| BH1185 | -149 | 4.7 | AATTTTTTAAAAAAT | |
| -148 | 4.7 | ATTTTTTAAAAAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hpr | ||||
| Ortholog function: Transcriptional repressor of sporulation and extracellular protein, MarR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU09990 | -90 | 4.4 | ATTTATTAAAAAATT |
| Bacillus licheniformis DSM 13 | BLi01078 | -93 | 4.7 | ATTTTTTAAAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2290 | -87 | 4.4 | ATTTATTAAAAAATT |
| Bacillus halodurans C-125 | BH1185 | -148 | 4.7 | ATTTTTTAAAAAATT |
|
Position: -324
Score: 4 Sequence: AATTTTTATAAAAAG
Position: -86
Score: 4 Sequence: ACTTTTCAGATAGTT
Locus tag: BH1627
|
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| BH1627 | -324 | 4 | AATTTTTATAAAAAG | |
| -86 | 4 | ACTTTTCAGATAGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: metI | ||||
| Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU11870 | -297 | 4.6 | AATTATTAGAAATTT |
| -214 | 4.3 | AACAATCAGAAAATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_011930 | -314 | 4.6 | AATTATTAGAAATTT |
| Bacillus pumilus SAFR-032 | BPUM_1119 | -297 | 4.4 | AAAATACAGAAAATT |
| -287 | 4.1 | AAATTTCAATTAATT | ||
| Bacillus licheniformis DSM 13 | BLi01289 | -164 | 4 | AACAATCAGAATATT |
| Anoxybacillus flavithermus WK1 | Aflv_2067 | -228 | 4.4 | ATTTTTCGGAAAATA |
| -200 | 4.6 | AAAAATCAGAAAATT | ||
| Geobacillus kaustophilus HTA426 | GK0866 | -341 | 4.5 | AAATTTAAAAAAATT |
| Bacillus cereus ATCC 14579 | BC4253 | -344 | 4.4 | AATTTTTTAATAAAT |
| Paenibacillus sp. JDR-2 | Pjdr2_4798 | -6 | 4.4 | AACTTTATGAAAATT |
|
Position: -94
Score: 4.5 Sequence: AAATGTCAGAAAAAT
Locus tag: BH1728
|
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| BH1728 | -94 | 4.5 | AAATGTCAGAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltA | ||||
| Ortholog function: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) | ||||
| Bacillus halodurans C-125 | BH1728 | -94 | 4.5 | AAATGTCAGAAAAAT |
| Oceanobacillus iheyensis HTE831 | OB3099 | -202 | 4.6 | AAATTTCAAAAAATA |
|
Position: -123
Score: 4.4 Sequence: ATTTATCAGTAAATT
Locus tag: BH1831
|
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| BH1831 | -123 | 4.4 | ATTTATCAGTAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lutP | ||||
| Ortholog function: L-lactate permease | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2011 | -121 | 4.4 | AAATTTTTAAATATT |
| Bacillus halodurans C-125 | BH1831 | -123 | 4.4 | ATTTATCAGTAAATT |
|
Position: -27
Score: 4.2 Sequence: AATTTTCAGAGAAGA
Locus tag: BH2156
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| BH2156 | -27 | 4.2 | AATTTTCAGAGAAGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybgE | ||||
| Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU02390 | -118 | 4.9 | AATATTCTGAAATTT |
| -38 | 4.6 | AATATTTAAACAATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_002760 | -152 | 4.4 | AAAATTTTGATAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_035750 | -48 | 4.3 | TATTTTCAAATAAGT |
| Bacillus pumilus SAFR-032 | BPUM_3500 | -226 | 4.4 | AATTGTCAGATTAAT |
|
Position: -232
Score: 4.3 Sequence: TATTTTCAGAATTTA
Locus tag: BH2206
|
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| BH2206 | -232 | 4.3 | TATTTTCAGAATTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: odhA | ||||
| Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) | ||||
| Bacillus cereus ATCC 14579 | BC1252 | -231 | 4.4 | ATTTTTCTGTAAAAT |
| Bacillus halodurans C-125 | BH2206 | -232 | 4.3 | TATTTTCAGAATTTA |
|
Position: -121
Score: 4.7 Sequence: ATTTGTCAAAAAATT
Locus tag: BH2374
|
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| BH2374 | -121 | 4.7 | ATTTGTCAAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH2374 | ||||
| Ortholog function: 2-oxoglutarate oxidoreductase, alpha subunit (EC 1.2.7.3) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1525 | -113 | 5 | ATTTTTCAAAAAATT |
| Bacillus cereus ATCC 14579 | BC3774 | -214 | 4.5 | AAAATTCAGAAAAAT |
| Bacillus halodurans C-125 | BH2374 | -121 | 4.7 | ATTTGTCAAAAAATT |
|
Position: -89
Score: 5 Sequence: AATTTTTTTAAAATT
Locus tag: BH2773
|
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| BH2773 | -89 | 5 | AATTTTTTTAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spo0A | ||||
| Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A) | ||||
| Bacillus pumilus SAFR-032 | BPUM_2154 | -111 | 4.4 | ATTATTCGGAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_0953 | -120 | 4.6 | TATTTTATGAAAAAT |
| Geobacillus kaustophilus HTA426 | GK2387 | -96 | 4.7 | TATTTTTTGAAAAAT |
| Bacillus cereus ATCC 14579 | BC4170 | -84 | 4.7 | AATTTTCACACAATT |
| Bacillus halodurans C-125 | BH2773 | -89 | 5 | AATTTTTTTAAAATT |
|
Position: 15
Score: 4.2 Sequence: ATTATTGAAAAAATT
Locus tag: BH3056
|
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| BH3056 | 15 | 4.2 | ATTATTGAAAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: leuC | ||||
| Ortholog function: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28260 | -633 | 4.1 | ATTAATAAAAAAATT |
| -544 | 4.7 | AATTGTCTAATAATT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_025320 | -464 | 4.7 | AATTGTCTAATAATT |
| Oceanobacillus iheyensis HTE831 | OB2618 | -508 | 4.1 | AATAATTAAAAAACT |
|
Position: -111
Score: 4.5 Sequence: TATTTTTTGACTATT
Locus tag: BH3062
|
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| BH3062 | -111 | 4.5 | TATTTTTTGACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvD | ||||
| Ortholog function: Dihydroxy-acid dehydratase (EC 4.2.1.9) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU21870 | -64 | 4.5 | AATAAACTGAAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_020010 | -56 | 4.5 | AATAAACTGAAAATT |
| Bacillus pumilus SAFR-032 | BPUM_1922 | -83 | 4.5 | AATAAACAGAAAATT |
| Bacillus licheniformis DSM 13 | BLi02324 | -51 | 4.8 | AATATTCAGAATATA |
| Bacillus halodurans C-125 | BH3062 | -217 | 4.3 | AATAGTCAAATTATT |
| -111 | 4.5 | TATTTTTTGACTATT | ||
|
Position: -65
Score: 4.3 Sequence: AATATTCAAAATAAA
Locus tag: BH3201
|
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| BH3201 | -65 | 4.3 | AATATTCAAAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ytcI | ||||
| Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases | ||||
| Bacillus halodurans C-125 | BH3201 | -65 | 4.3 | AATATTCAAAATAAA |
| Bacillus clausii KSM-K16 | ABC3255 | -175 | 4.3 | CTTTTTTAGAAAATT |
|
Position: -47
Score: 4.3 Sequence: AAAATTCTGATAATA
Locus tag: BH3406
|
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| BH3406 | -47 | 4.3 | AAAATTCTGATAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yuiA | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32090 | -36 | 4.9 | TATTATCAGAAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_029140 | -34 | 4.9 | TATTATCAGAAAATT |
| Geobacillus kaustophilus HTA426 | GK2951 | -54 | 4.4 | TTTTTACAGAAAATT |
| Bacillus halodurans C-125 | BH3406 | -47 | 4.3 | AAAATTCTGATAATA |
|
Position: -240
Score: 4.5 Sequence: AATTTTCGAAAAATA
Position: -62
Score: 5 Sequence: AATTTTCTGAATATA
Locus tag: BH3439
|
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| BH3439 | -240 | 4.5 | AATTTTCGAAAAATA | |
| -62 | 5 | AATTTTCTGAATATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH3439 | ||||
| Ortholog function: Sodium/proline symporter | ||||
| Bacillus licheniformis DSM 13 | BLi03425 | -56 | 5 | AATTATTAGAAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_2428 | -166 | 4.5 | ATTTTTTAAAATATT |
| Bacillus cereus ATCC 14579 | BC4071 | -70 | 4.5 | AATTTATTGATAATT |
| Bacillus halodurans C-125 | BH3439 | -240 | 4.5 | AATTTTCGAAAAATA |
| -62 | 5 | AATTTTCTGAATATA | ||
| Bacillus clausii KSM-K16 | ABC1961 | -101 | 4.6 | TTTTTTCAGAAAATA |
|
Position: -134
Score: 4.8 Sequence: AATTTTCAGAAAATC
Locus tag: BH3488
|
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| BH3488 | -134 | 4.8 | AATTTTCAGAAAATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadN | ||||
| Ortholog function: Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_029920 | -132 | 4.5 | AAATTTAAAAAAATT |
| Bacillus licheniformis DSM 13 | BLi03466 | -132 | 4.4 | AAAATTCAGAAATTT |
| Bacillus cereus ATCC 14579 | BC5004 | -141 | 4.5 | TTATTTCAGAAAATT |
| Bacillus halodurans C-125 | BH3488 | -134 | 4.8 | AATTTTCAGAAAATC |
|
Position: -174
Score: 4.8 Sequence: AATATTTATAAAATT
Locus tag: BH3819
|
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| BH3819 | -174 | 4.8 | AATATTTATAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelB | ||||
| Ortholog function: Pectate lyase precursor (EC 4.2.2.2) | ||||
| Bacillus licheniformis DSM 13 | BLi04129 | -151 | 4.7 | ATTATTCAGACAATT |
| Bacillus halodurans C-125 | BH3819 | -183 | 4.5 | TATATTCATAATATT |
| -174 | 4.8 | AATATTTATAAAATT | ||
|
Position: -258
Score: 4.4 Sequence: TATTTTTTGAAAAAA
Locus tag: BH3820
|
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| BH3820 | -258 | 4.4 | TATTTTTTGAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltO | ||||
| Ortholog function: Proton/sodium-glutamate symport protein | ||||
| Bacillus pumilus SAFR-032 | BPUM_0421 | -252 | 5 | AATTTTCTAAAAATA |
| -230 | 4.4 | AATAGTATGAAAATA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1459 | -140 | 4.9 | ATTTTTCTGACAATT |
| Bacillus cereus ATCC 14579 | BC1389 | -88 | 4.6 | AAAATTCAGAAAATA |
| Bacillus halodurans C-125 | BH3820 | -258 | 4.4 | TATTTTTTGAAAAAA |
| Bacillus clausii KSM-K16 | ABC3908 | -77 | 4.3 | AATTTTTAATAAAAT |
| Oceanobacillus iheyensis HTE831 | OB0021 | -36 | 4.9 | AATTTTCTGAAAAAA |
|
Position: -114
Score: 4.6 Sequence: AATTTTATAAAAAAT
Locus tag: BH3823
|
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| BH3823 | -114 | 4.6 | AATTTTATAAAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pta | ||||
| Ortholog function: Phosphate acetyltransferase (EC 2.3.1.8) | ||||
| Bacillus cereus ATCC 14579 | BC5387 | -124 | 4.9 | AATTTTATGAAAATA |
| Bacillus halodurans C-125 | BH3823 | -114 | 4.6 | AATTTTATAAAAAAT |
|
Position: -51
Score: 4.5 Sequence: TATTATTTGAATATT
Locus tag: BH4033
|
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| BH4033 | -51 | 4.5 | TATTATTTGAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glyP | ||||
| Ortholog function: Sodium/glycine symporter GlyP | ||||
| Bacillus licheniformis DSM 13 | BLi00817 | -52 | 4.6 | AACTTTCAGAATATT |
| Bacillus halodurans C-125 | BH4033 | -51 | 4.5 | TATTATTTGAATATT |