Propagation of TnrA regulog to Bacillus halodurans C-125
| Source regulog: | TnrA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor (activator) |
| Biological process: | Nitrogen assimilation |
| Effector: | NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Bacillus halodurans C-125 |
| Orthologous TF(s) | BH1494 |
| Regulated genes | 35 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -192
Score: 4.5 Sequence: TGTTATCTTTGATGACA
Position: -157
Score: 5 Sequence: TGTTAGAAAAGATTACA
Position: -88
Score: 4.4 Sequence: TGTAACGATTTCTAACG
Locus tag: BH0251
|
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| BH0251 | -192 | 4.5 | TGTTATCTTTGATGACA | |
| -157 | 5 | TGTTAGAAAAGATTACA | ||
| -88 | 4.4 | TGTAACGATTTCTAACG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: urtA | ||||
| Ortholog function: Urea ABC transporter, urea binding protein | ||||
| Geobacillus kaustophilus HTA426 | GK1937 | -224 | 4.3 | TGATAATAAATATAACA |
| -201 | 5.2 | TGTAATAAAATGTGACA | ||
| Bacillus halodurans C-125 | BH0251 | -192 | 4.5 | TGTTATCTTTGATGACA |
| -157 | 5 | TGTTAGAAAAGATTACA | ||
| -88 | 4.4 | TGTAACGATTTCTAACG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_0557 | -286 | 4.2 | TCTTATATTTTCTTTCA |
| -113 | 3.9 | TGTCATGTATATTGACG | ||
|
Position: -165
Score: 4.4 Sequence: CGTTAGAAATCGTTACA
Position: -96
Score: 5 Sequence: TGTAATCTTTTCTAACA
Position: -61
Score: 4.5 Sequence: TGTCATCAAAGATAACA
Locus tag: BH0252
|
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| BH0252 | -165 | 4.4 | CGTTAGAAATCGTTACA | |
| -96 | 5 | TGTAATCTTTTCTAACA | ||
| -61 | 4.5 | TGTCATCAAAGATAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ureA | ||||
| Ortholog function: Urease gamma subunit (EC 3.5.1.5) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU36660 | -938 | 4.5 | TGTGAATAAATATAACA |
| -833 | 4.6 | TGTAAACTTTTATAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_033830 | -308 | 4.2 | TGTTATGAGAAATGACA |
| -203 | 3.9 | TGTAACCTTTCTTCACA | ||
| Bacillus halodurans C-125 | BH0252 | -165 | 4.4 | CGTTAGAAATCGTTACA |
| -96 | 5 | TGTAATCTTTTCTAACA | ||
| -61 | 4.5 | TGTCATCAAAGATAACA | ||
|
Position: -178
Score: 4.6 Sequence: TGTTAGTAGATATAACA
Locus tag: BH0421
|
||||
| BH0421 | -178 | 4.6 | TGTTAGTAGATATAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagA | ||||
| Ortholog function: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_032200 | -129 | 3.9 | AGTTATATTTTATCACT |
| Bacillus licheniformis DSM 13 | BLi04348 | -147 | 4.8 | TGGAATATAACCTGACA |
| Bacillus halodurans C-125 | BH0421 | -178 | 4.6 | TGTTAGTAGATATAACA |
|
Position: -145
Score: 4.6 Sequence: TGTTATATCTACTAACA
Locus tag: BH0422
|
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| BH0422 | -145 | 4.6 | TGTTATATCTACTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagP | ||||
| Ortholog function: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) | ||||
| Bacillus licheniformis DSM 13 | BLi04352 | -147 | 4.8 | TGGAATATAACCTGACA |
| Bacillus halodurans C-125 | BH0422 | -145 | 4.6 | TGTTATATCTACTAACA |
|
Position: -80
Score: 4.6 Sequence: TGTAAGATATCCTCCCA
Locus tag: BH0612
|
||||
| BH0612 | -80 | 4.6 | TGTAAGATATCCTCCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH0612 | ||||
| Ortholog function: Nitrate/nitrite transporter | ||||
| Bacillus halodurans C-125 | BH0612 | -80 | 4.6 | TGTAAGATATCCTCCCA |
|
Position: -245
Score: 4 Sequence: TGATAAGTTACCTTACA
Locus tag: BH0746
|
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| BH0746 | -245 | 4 | TGATAAGTTACCTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH0746 | ||||
| Ortholog function: N-ethylammeline chlorohydrolase | ||||
| Bacillus halodurans C-125 | BH0746 | -245 | 4 | TGATAAGTTACCTTACA |
| Paenibacillus sp. JDR-2 | Pjdr2_3326 | -55 | 4.9 | TGTTATATAAAGTAACA |
|
Position: -86
Score: 4.8 Sequence: TGTTAAAAATCCTAACA
Locus tag: BH0757
|
||||
| BH0757 | -86 | 4.8 | TGTTAAAAATCCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pucR | ||||
| Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family | ||||
| Bacillus halodurans C-125 | BH0757 | -191 | 4.2 | TGTGAAGTTTTTTAACA |
| -86 | 4.8 | TGTTAAAAATCCTAACA | ||
| 31 | 4.5 | TGTTAGATCTTCCAACA | ||
|
Position: -301
Score: 4.8 Sequence: TGTTAGGATTTTTAACA
Position: -196
Score: 4.2 Sequence: TGTTAAAAAACTTCACA
Locus tag: BH0758
|
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| BH0758 | -301 | 4.8 | TGTTAGGATTTTTAACA | |
| -196 | 4.2 | TGTTAAAAAACTTCACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH0758 | ||||
| Ortholog function: Uricase (EC 1.7.3.3) | ||||
| Bacillus halodurans C-125 | BH0758 | -301 | 4.8 | TGTTAGGATTTTTAACA |
| -196 | 4.2 | TGTTAAAAAACTTCACA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_3316 | -179 | 4.1 | TGTGATCTATTGTTACG |
| -96 | 4.3 | TGTAAGATATATTGACG | ||
|
Position: -87
Score: 5.1 Sequence: CGTCATAAAATCTAACA
Locus tag: BH1073
|
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| BH1073 | -87 | 5.1 | CGTCATAAAATCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysnE | ||||
| Ortholog function: GNAT family acetyltransferase | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU28330 | -141 | 5.1 | TGGAAGATTTTATAACA |
| -97 | 4 | TGACAGATCATCTTGCA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_035380 | -210 | 4.1 | TTGAACATTTTGTTACA |
| -85 | 4.3 | TGTCACATTTCCGGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_3242 | -64 | 4.3 | TGTTCGTTTATGTGACA |
| Bacillus halodurans C-125 | BH1073 | -87 | 5.1 | CGTCATAAAATCTAACA |
|
Position: -216
Score: 4.4 Sequence: TGCAAGAAAATGTCACA
Locus tag: BH1368
|
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| BH1368 | -216 | 4.4 | TGCAAGAAAATGTCACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqzL | ||||
| Ortholog function: Hypothetical protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU25289 | -135 | 4.3 | TGTGTCATTATCTCACA |
| Bacillus pumilus SAFR-032 | BPUM_2261 | -134 | 5.5 | TGTCATAAAATCTGACA |
| Bacillus halodurans C-125 | BH1368 | -216 | 4.4 | TGCAAGAAAATGTCACA |
|
Position: -110
Score: 5.5 Sequence: TGTAAGAAAATCTAACA
Locus tag: BH1494
|
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| BH1494 | -110 | 5.5 | TGTAAGAAAATCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tnrA | ||||
| Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU13310 | -124 | 3.9 | TGTTAATTTTTCTTCCG |
| -81 | 5.5 | TGTTAGAAAATATGACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_013130 | -124 | 4.1 | TGTCAATTTTTCTGCCG |
| -81 | 4.8 | CGTCAGAAAACCTGACA | ||
| Bacillus pumilus SAFR-032 | BPUM_1230 | -121 | 4 | TGTCAACTTTCCTTCCA |
| -80 | 5.5 | TGTTATATTTTCTAACA | ||
| Bacillus licheniformis DSM 13 | BLi01490 | -124 | 3.8 | TGTAAACTTTTCTTCCG |
| -81 | 5.6 | TGTTAGATTTTCTGACA | ||
| Anoxybacillus flavithermus WK1 | Aflv_1544 | -113 | 4.9 | TGTTACTTTTTATAACA |
| -82 | 4.9 | TGTTACTTTTTATAACA | ||
| -27 | 5.4 | TGTTATAAAATATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1860 | -86 | 3.9 | TGTTAATTTTATTTACA |
| -33 | 4.6 | CGTTAGAAAATATAACG | ||
| Bacillus halodurans C-125 | BH1494 | -110 | 5.5 | TGTAAGAAAATCTAACA |
| Bacillus clausii KSM-K16 | ABC1760 | -99 | 5.5 | TGTTAGATTTTCTTACA |
| -57 | 5 | TGTGATATATTGTTACA | ||
| Oceanobacillus iheyensis HTE831 | OB1650 | -80 | 5.1 | TGTTAGAAATACTAACA |
| -57 | 4.3 | TGACATATAAGCTGACG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_5154 | -302 | 5.7 | TGTTAGATAATCTAACA |
| -41 | 5 | TGTTAGAAAACATTACA | ||
|
Position: -182
Score: 5.5 Sequence: TGTTAGATTTTCTTACA
Locus tag: BH1495
|
||||
| BH1495 | -182 | 5.5 | TGTTAGATTTTCTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nasF | ||||
| Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU03280 | -95 | 4.1 | TCGTATATTTTGTTACA |
| -85 | 5.3 | TGTTACATTTTATAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_003490 | -84 | 4.9 | TGTTACATTTCATAACA |
| Bacillus licheniformis DSM 13 | BLi00486 | -87 | 5 | TGTCAGGAAATGTAACA |
|
Position: -191
Score: 3.9 Sequence: TGTCATTTAATGCATCA
Locus tag: BH1772
|
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| BH1772 | -191 | 3.9 | TGTCATTTAATGCATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: alsT | ||||
| Ortholog function: Sodium/alanine symporter family protein | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU18120 | -240 | 3.9 | GGGAAGAAATGATTACA |
| -61 | 5.2 | TGTTAAAAAATCTAACA | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_017940 | -64 | 4.8 | TGTTAAAAGATCTAACA |
| Bacillus licheniformis DSM 13 | BLi02069 | -51 | 4.8 | TGTTAGAAAACTTAACA |
| Bacillus halodurans C-125 | BH1772 | -191 | 3.9 | TGTCATTTAATGCATCA |
|
Position: -260
Score: 4.5 Sequence: TGTCATAAAGCCTAACA
Position: -71
Score: 4.2 Sequence: TATCAGAAAATATAAAA
Locus tag: BH2309
|
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| BH2309 | -260 | 4.5 | TGTCATAAAGCCTAACA | |
| -71 | 4.2 | TATCAGAAAATATAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pucH | ||||
| Ortholog function: Allantoinase (EC 3.5.2.5) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32410 | -51 | 5.1 | TGTTACATAAACTGACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_029500 | -50 | 4.9 | TGTGATAAAAACTGACA |
| Bacillus halodurans C-125 | BH2309 | -260 | 4.5 | TGTCATAAAGCCTAACA |
| -71 | 4.2 | TATCAGAAAATATAAAA | ||
| Bacillus clausii KSM-K16 | ABC3732 | -173 | 4.2 | TGTAAACAATCCTAACA |
| Bacillus clausii KSM-K16 | ABC3732 | -173 | 4.2 | TGTAAACAATCCTAACA |
| Paenibacillus sp. JDR-2 | Pjdr2_3313 | -179 | 4.1 | TGTGATCTATTGTTACG |
| -96 | 4.3 | TGTAAGATATATTGACG | ||
|
Position: -158
Score: 5.6 Sequence: TGTCAGATTATCTTACA
Locus tag: BH2360
|
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| BH2360 | -158 | 5.6 | TGTCAGATTATCTTACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Bacillus halodurans C-125 | BH2360 | -158 | 5.6 | TGTCAGATTATCTTACA |
|
Position: -93
Score: 4.1 Sequence: TGCTAGAAATTCTGGCA
Locus tag: BH3061
|
||||
| BH3061 | -93 | 4.1 | TGCTAGAAATTCTGGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ilvB | ||||
| Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6) | ||||
| Bacillus halodurans C-125 | BH3061 | -93 | 4.1 | TGCTAGAAATTCTGGCA |
|
Position: -86
Score: 4.1 Sequence: TGTGAGAATACCTCGCA
Locus tag: BH3406
|
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| BH3406 | -86 | 4.1 | TGTGAGAATACCTCGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yuiA | ||||
| Ortholog function: Uncharacterized conserved protein contain two CXXC motifs | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32090 | -78 | 4.4 | TGTCACATGATCTGACT |
| Bacillus amyloliquefaciens FZB42 | RBAM_029140 | -76 | 4.8 | TGTTACATATTCTGACT |
| Bacillus halodurans C-125 | BH3406 | -86 | 4.1 | TGTGAGAATACCTCGCA |
|
Position: -277
Score: 4.3 Sequence: TGGCAAAAAAAGTGACA
Position: -125
Score: 4.3 Sequence: TGACAGATTTATTTACA
Locus tag: BH3408
|
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| BH3408 | -277 | 4.3 | TGGCAAAAAAAGTGACA | |
| -125 | 4.3 | TGACAGATTTATTTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yumC | ||||
| Ortholog function: Thioredoxin reductase (EC 1.8.1.9) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU32110 | -43 | 4.6 | TGGTATAATTAATAACA |
| Bacillus amyloliquefaciens FZB42 | RBAM_029160 | -229 | 3.9 | TGAAATGAAATATAAAA |
| -42 | 4.9 | TGTTATAATTAATAACA | ||
| Bacillus halodurans C-125 | BH3408 | -277 | 4.3 | TGGCAAAAAAAGTGACA |
| -125 | 4.3 | TGACAGATTTATTTACA | ||
|
Position: -180
Score: 4.3 Sequence: TGTGAGATAATTTAGCA
Locus tag: BH3641
|
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| BH3641 | -180 | 4.3 | TGTGAGATAATTTAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH3641 | ||||
| Ortholog function: Transcriptional regulator, Lrp/AsnC family | ||||
| Bacillus halodurans C-125 | BH3641 | -180 | 4.3 | TGTGAGATAATTTAGCA |
| Bacillus clausii KSM-K16 | ABC3095 | -446 | 5 | TGTTATATCTTCTTACA |
|
Position: -127
Score: 5.5 Sequence: TGTCATAATATCTAACA
Locus tag: BH3820
|
||||
| BH3820 | -127 | 5.5 | TGTCATAATATCTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltT | ||||
| Ortholog function: H(+)/sodium-glutamate symporter | ||||
| Bacillus halodurans C-125 | BH3820 | -217 | 4.2 | TGTTAGCCTATTTGACA |
| -127 | 5.5 | TGTCATAATATCTAACA | ||
| Oceanobacillus iheyensis HTE831 | OB0021 | -678 | 4.6 | TGTTAAATAATGTAACG |
|
Position: -113
Score: 4.9 Sequence: TGTCTGATTATCTGACA
Locus tag: BH3834
|
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| BH3834 | -113 | 4.9 | TGTCTGATTATCTGACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrgA | ||||
| Ortholog function: Ammonium transporter | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1332 | -112 | 4.6 | TGTCATGAAAAATAACA |
| -49 | 4.8 | TGTAATATATTATAACC | ||
| -27 | 5 | TGTTATAAAAAATGACA | ||
| Geobacillus kaustophilus HTA426 | GK1452 | -124 | 4.4 | TGTTAAGAAATTTAACA |
| -48 | 5.4 | TGTTATATATTATGACA | ||
| Bacillus halodurans C-125 | BH3834 | -138 | 4 | TGTCAGATATAGGCACA |
| -113 | 4.9 | TGTCTGATTATCTGACA | ||
| -41 | 4.3 | TATTAGAAAAACTTACA | ||
| Bacillus clausii KSM-K16 | ABC3928 | -84 | 5.2 | TGTTAGATATCCTGACA |
| Paenibacillus sp. JDR-2 | Pjdr2_2141 | -159 | 4.2 | TGTGAAAAAACTTAACA |
| -34 | 4.5 | TGTTAGTAAACATCACA | ||
|
Position: -103
Score: 5.7 Sequence: TGTCAGATAATCTAACA
Position: -33
Score: 4.9 Sequence: TGTCACATTACATTACA
Locus tag: BH3867
|
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| BH3867 | -103 | 5.7 | TGTCAGATAATCTAACA | |
| -33 | 4.9 | TGTCACATTACATTACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnA2 | ||||
| Ortholog function: Glutamine synthetase type I (EC 6.3.1.2) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1403 | -16 | 4.9 | TGTGAGGTAATGTAACA |
| Geobacillus kaustophilus HTA426 | GK1637 | -16 | 4.9 | TGTGAGGTAATGTGACA |
| Bacillus halodurans C-125 | BH3867 | -103 | 5.7 | TGTCAGATAATCTAACA |
| -33 | 4.9 | TGTCACATTACATTACA | ||
| Bacillus clausii KSM-K16 | ABC3940 | -103 | 5.7 | TGTCAGATAATCTGACA |