Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TnrA regulog to Bacillus halodurans C-125

Reference regulog properties
Source regulog: TnrA - Bacillales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor (activator)
Biological process: Nitrogen assimilation
Effector: NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus halodurans C-125
Orthologous TF(s) BH1494
Regulated genes 35
Built upon 304 sites [see more]
Predicted regulatory interactions in Bacillus halodurans C-125
Locus tag Position Score Sequence
Position: -192
Score: 4.5
Sequence: TGTTATCTTTGATGACA
Position: -157
Score: 5
Sequence: TGTTAGAAAAGATTACA
Position: -88
Score: 4.4
Sequence: TGTAACGATTTCTAACG
Locus tag: BH0251
BH0251 -192 4.5 TGTTATCTTTGATGACA
-157 5 TGTTAGAAAAGATTACA
-88 4.4 TGTAACGATTTCTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, urea binding protein
Geobacillus kaustophilus HTA426 GK1937 -224 4.3 TGATAATAAATATAACA
-201 5.2 TGTAATAAAATGTGACA
Bacillus halodurans C-125 BH0251 -192 4.5 TGTTATCTTTGATGACA
-157 5 TGTTAGAAAAGATTACA
-88 4.4 TGTAACGATTTCTAACG
Paenibacillus sp. JDR-2 Pjdr2_0557 -286 4.2 TCTTATATTTTCTTTCA
-113 3.9 TGTCATGTATATTGACG
Position: -165
Score: 4.4
Sequence: CGTTAGAAATCGTTACA
Position: -96
Score: 5
Sequence: TGTAATCTTTTCTAACA
Position: -61
Score: 4.5
Sequence: TGTCATCAAAGATAACA
Locus tag: BH0252
BH0252 -165 4.4 CGTTAGAAATCGTTACA
-96 5 TGTAATCTTTTCTAACA
-61 4.5 TGTCATCAAAGATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease gamma subunit (EC 3.5.1.5)
Bacillus subtilis subsp. subtilis str. 168 BSU36660 -938 4.5 TGTGAATAAATATAACA
-833 4.6 TGTAAACTTTTATAACA
Bacillus amyloliquefaciens FZB42 RBAM_033830 -308 4.2 TGTTATGAGAAATGACA
-203 3.9 TGTAACCTTTCTTCACA
Bacillus halodurans C-125 BH0252 -165 4.4 CGTTAGAAATCGTTACA
-96 5 TGTAATCTTTTCTAACA
-61 4.5 TGTCATCAAAGATAACA
Position: -178
Score: 4.6
Sequence: TGTTAGTAGATATAACA
Locus tag: BH0421
BH0421 -178 4.6 TGTTAGTAGATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagA
Ortholog function: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Bacillus amyloliquefaciens FZB42 RBAM_032200 -129 3.9 AGTTATATTTTATCACT
Bacillus licheniformis DSM 13 BLi04348 -147 4.8 TGGAATATAACCTGACA
Bacillus halodurans C-125 BH0421 -178 4.6 TGTTAGTAGATATAACA
Position: -145
Score: 4.6
Sequence: TGTTATATCTACTAACA
Locus tag: BH0422
BH0422 -145 4.6 TGTTATATCTACTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Bacillus licheniformis DSM 13 BLi04352 -147 4.8 TGGAATATAACCTGACA
Bacillus halodurans C-125 BH0422 -145 4.6 TGTTATATCTACTAACA
Position: -80
Score: 4.6
Sequence: TGTAAGATATCCTCCCA
Locus tag: BH0612
BH0612 -80 4.6 TGTAAGATATCCTCCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0612
Ortholog function: Nitrate/nitrite transporter
Bacillus halodurans C-125 BH0612 -80 4.6 TGTAAGATATCCTCCCA
Position: -245
Score: 4
Sequence: TGATAAGTTACCTTACA
Locus tag: BH0746
BH0746 -245 4 TGATAAGTTACCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0746
Ortholog function: N-ethylammeline chlorohydrolase
Bacillus halodurans C-125 BH0746 -245 4 TGATAAGTTACCTTACA
Paenibacillus sp. JDR-2 Pjdr2_3326 -55 4.9 TGTTATATAAAGTAACA
Position: -86
Score: 4.8
Sequence: TGTTAAAAATCCTAACA
Locus tag: BH0757
BH0757 -86 4.8 TGTTAAAAATCCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucR
Ortholog function: Transcriptional regulator of the purine degradation operon, PucR family
Bacillus halodurans C-125 BH0757 -191 4.2 TGTGAAGTTTTTTAACA
-86 4.8 TGTTAAAAATCCTAACA
31 4.5 TGTTAGATCTTCCAACA
Position: -301
Score: 4.8
Sequence: TGTTAGGATTTTTAACA
Position: -196
Score: 4.2
Sequence: TGTTAAAAAACTTCACA
Locus tag: BH0758
BH0758 -301 4.8 TGTTAGGATTTTTAACA
-196 4.2 TGTTAAAAAACTTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0758
Ortholog function: Uricase (EC 1.7.3.3)
Bacillus halodurans C-125 BH0758 -301 4.8 TGTTAGGATTTTTAACA
-196 4.2 TGTTAAAAAACTTCACA
Paenibacillus sp. JDR-2 Pjdr2_3316 -179 4.1 TGTGATCTATTGTTACG
-96 4.3 TGTAAGATATATTGACG
Position: -87
Score: 5.1
Sequence: CGTCATAAAATCTAACA
Locus tag: BH1073
BH1073 -87 5.1 CGTCATAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ysnE
Ortholog function: GNAT family acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU28330 -141 5.1 TGGAAGATTTTATAACA
-97 4 TGACAGATCATCTTGCA
Bacillus amyloliquefaciens FZB42 RBAM_035380 -210 4.1 TTGAACATTTTGTTACA
-85 4.3 TGTCACATTTCCGGACA
Bacillus pumilus SAFR-032 BPUM_3242 -64 4.3 TGTTCGTTTATGTGACA
Bacillus halodurans C-125 BH1073 -87 5.1 CGTCATAAAATCTAACA
Position: -216
Score: 4.4
Sequence: TGCAAGAAAATGTCACA
Locus tag: BH1368
BH1368 -216 4.4 TGCAAGAAAATGTCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqzL
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU25289 -135 4.3 TGTGTCATTATCTCACA
Bacillus pumilus SAFR-032 BPUM_2261 -134 5.5 TGTCATAAAATCTGACA
Bacillus halodurans C-125 BH1368 -216 4.4 TGCAAGAAAATGTCACA
Position: -110
Score: 5.5
Sequence: TGTAAGAAAATCTAACA
Locus tag: BH1494
BH1494 -110 5.5 TGTAAGAAAATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168 BSU13310 -124 3.9 TGTTAATTTTTCTTCCG
-81 5.5 TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42 RBAM_013130 -124 4.1 TGTCAATTTTTCTGCCG
-81 4.8 CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032 BPUM_1230 -121 4 TGTCAACTTTCCTTCCA
-80 5.5 TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13 BLi01490 -124 3.8 TGTAAACTTTTCTTCCG
-81 5.6 TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1 Aflv_1544 -113 4.9 TGTTACTTTTTATAACA
-82 4.9 TGTTACTTTTTATAACA
-27 5.4 TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426 GK1860 -86 3.9 TGTTAATTTTATTTACA
-33 4.6 CGTTAGAAAATATAACG
Bacillus halodurans C-125 BH1494 -110 5.5 TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16 ABC1760 -99 5.5 TGTTAGATTTTCTTACA
-57 5 TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831 OB1650 -80 5.1 TGTTAGAAATACTAACA
-57 4.3 TGACATATAAGCTGACG
Paenibacillus sp. JDR-2 Pjdr2_5154 -302 5.7 TGTTAGATAATCTAACA
-41 5 TGTTAGAAAACATTACA
Position: -182
Score: 5.5
Sequence: TGTTAGATTTTCTTACA
Locus tag: BH1495
BH1495 -182 5.5 TGTTAGATTTTCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasF
Ortholog function: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Bacillus subtilis subsp. subtilis str. 168 BSU03280 -95 4.1 TCGTATATTTTGTTACA
-85 5.3 TGTTACATTTTATAACA
Bacillus amyloliquefaciens FZB42 RBAM_003490 -84 4.9 TGTTACATTTCATAACA
Bacillus licheniformis DSM 13 BLi00486 -87 5 TGTCAGGAAATGTAACA
Position: -191
Score: 3.9
Sequence: TGTCATTTAATGCATCA
Locus tag: BH1772
BH1772 -191 3.9 TGTCATTTAATGCATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: alsT
Ortholog function: Sodium/alanine symporter family protein
Bacillus subtilis subsp. subtilis str. 168 BSU18120 -240 3.9 GGGAAGAAATGATTACA
-61 5.2 TGTTAAAAAATCTAACA
Bacillus amyloliquefaciens FZB42 RBAM_017940 -64 4.8 TGTTAAAAGATCTAACA
Bacillus licheniformis DSM 13 BLi02069 -51 4.8 TGTTAGAAAACTTAACA
Bacillus halodurans C-125 BH1772 -191 3.9 TGTCATTTAATGCATCA
Position: -260
Score: 4.5
Sequence: TGTCATAAAGCCTAACA
Position: -71
Score: 4.2
Sequence: TATCAGAAAATATAAAA
Locus tag: BH2309
BH2309 -260 4.5 TGTCATAAAGCCTAACA
-71 4.2 TATCAGAAAATATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pucH
Ortholog function: Allantoinase (EC 3.5.2.5)
Bacillus subtilis subsp. subtilis str. 168 BSU32410 -51 5.1 TGTTACATAAACTGACA
Bacillus amyloliquefaciens FZB42 RBAM_029500 -50 4.9 TGTGATAAAAACTGACA
Bacillus halodurans C-125 BH2309 -260 4.5 TGTCATAAAGCCTAACA
-71 4.2 TATCAGAAAATATAAAA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Bacillus clausii KSM-K16 ABC3732 -173 4.2 TGTAAACAATCCTAACA
Paenibacillus sp. JDR-2 Pjdr2_3313 -179 4.1 TGTGATCTATTGTTACG
-96 4.3 TGTAAGATATATTGACG
Position: -158
Score: 5.6
Sequence: TGTCAGATTATCTTACA
Locus tag: BH2360
BH2360 -158 5.6 TGTCAGATTATCTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Bacillus halodurans C-125 BH2360 -158 5.6 TGTCAGATTATCTTACA
Position: -93
Score: 4.1
Sequence: TGCTAGAAATTCTGGCA
Locus tag: BH3061
BH3061 -93 4.1 TGCTAGAAATTCTGGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvB
Ortholog function: Acetolactate synthase large subunit (EC 2.2.1.6)
Bacillus halodurans C-125 BH3061 -93 4.1 TGCTAGAAATTCTGGCA
Position: -86
Score: 4.1
Sequence: TGTGAGAATACCTCGCA
Locus tag: BH3406
BH3406 -86 4.1 TGTGAGAATACCTCGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiA
Ortholog function: Uncharacterized conserved protein contain two CXXC motifs
Bacillus subtilis subsp. subtilis str. 168 BSU32090 -78 4.4 TGTCACATGATCTGACT
Bacillus amyloliquefaciens FZB42 RBAM_029140 -76 4.8 TGTTACATATTCTGACT
Bacillus halodurans C-125 BH3406 -86 4.1 TGTGAGAATACCTCGCA
Position: -277
Score: 4.3
Sequence: TGGCAAAAAAAGTGACA
Position: -125
Score: 4.3
Sequence: TGACAGATTTATTTACA
Locus tag: BH3408
BH3408 -277 4.3 TGGCAAAAAAAGTGACA
-125 4.3 TGACAGATTTATTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yumC
Ortholog function: Thioredoxin reductase (EC 1.8.1.9)
Bacillus subtilis subsp. subtilis str. 168 BSU32110 -43 4.6 TGGTATAATTAATAACA
Bacillus amyloliquefaciens FZB42 RBAM_029160 -229 3.9 TGAAATGAAATATAAAA
-42 4.9 TGTTATAATTAATAACA
Bacillus halodurans C-125 BH3408 -277 4.3 TGGCAAAAAAAGTGACA
-125 4.3 TGACAGATTTATTTACA
Position: -180
Score: 4.3
Sequence: TGTGAGATAATTTAGCA
Locus tag: BH3641
BH3641 -180 4.3 TGTGAGATAATTTAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3641
Ortholog function: Transcriptional regulator, Lrp/AsnC family
Bacillus halodurans C-125 BH3641 -180 4.3 TGTGAGATAATTTAGCA
Bacillus clausii KSM-K16 ABC3095 -446 5 TGTTATATCTTCTTACA
Position: -127
Score: 5.5
Sequence: TGTCATAATATCTAACA
Locus tag: BH3820
BH3820 -127 5.5 TGTCATAATATCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltT
Ortholog function: H(+)/sodium-glutamate symporter
Bacillus halodurans C-125 BH3820 -217 4.2 TGTTAGCCTATTTGACA
-127 5.5 TGTCATAATATCTAACA
Oceanobacillus iheyensis HTE831 OB0021 -678 4.6 TGTTAAATAATGTAACG
Position: -113
Score: 4.9
Sequence: TGTCTGATTATCTGACA
Locus tag: BH3834
BH3834 -113 4.9 TGTCTGATTATCTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1 Aflv_1332 -112 4.6 TGTCATGAAAAATAACA
-49 4.8 TGTAATATATTATAACC
-27 5 TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426 GK1452 -124 4.4 TGTTAAGAAATTTAACA
-48 5.4 TGTTATATATTATGACA
Bacillus halodurans C-125 BH3834 -138 4 TGTCAGATATAGGCACA
-113 4.9 TGTCTGATTATCTGACA
-41 4.3 TATTAGAAAAACTTACA
Bacillus clausii KSM-K16 ABC3928 -84 5.2 TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2 Pjdr2_2141 -159 4.2 TGTGAAAAAACTTAACA
-34 4.5 TGTTAGTAAACATCACA
Position: -103
Score: 5.7
Sequence: TGTCAGATAATCTAACA
Position: -33
Score: 4.9
Sequence: TGTCACATTACATTACA
Locus tag: BH3867
BH3867 -103 5.7 TGTCAGATAATCTAACA
-33 4.9 TGTCACATTACATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnA2
Ortholog function: Glutamine synthetase type I (EC 6.3.1.2)
Anoxybacillus flavithermus WK1 Aflv_1403 -16 4.9 TGTGAGGTAATGTAACA
Geobacillus kaustophilus HTA426 GK1637 -16 4.9 TGTGAGGTAATGTGACA
Bacillus halodurans C-125 BH3867 -103 5.7 TGTCAGATAATCTAACA
-33 4.9 TGTCACATTACATTACA
Bacillus clausii KSM-K16 ABC3940 -103 5.7 TGTCAGATAATCTGACA
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