Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Burkholderia phymatum STM815

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BPSL1086 Metabolite transport 2 1
TF BPSL1304 Sugar utilization 1 1
TF BPSS0970 1 1
TF BPSS1200 1 1
TF Bamb_3558 1 1
TF Bamb_6386 4 5
TF Bcep1808_4966 1 1
TF BglR Beta-glucoside Beta-glucosides utilization 1 1
TF Bphy_2245 Sugar utilization 1 1
TF Bphy_4252 Lactate utilization; Glycolate utilization 4 4
TF Bphy_4590 Sugar utilization 2 2
TF Bphy_6994 NULL 1 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF EutR Ectoine utilization 3 3
TF FadP Fatty acid degradation 11 8
TF FdsR Formate Formate oxydation 2 4
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 6 3
TF GguR Glucarate utilization; Galactarate utilization 8 8
TF GlcC Glycolate Glycolate utilization 5 9
TF GntR Gluconate Gluconate utilization 2 4
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 5
TF HrcA Heat shock Heat shock response 2 2
TF HutC cis-Urocanic acid Histidine utilization 3 5
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 2
TF LexA DNA damage SOS response 7 8
TF LiuQ Branched-chain amino acid degradation 3 2
TF LiuR Branched-chain amino acid degradation 3 3
TF LldR L-lactate Lactate utilization 2 2
TF MetR Homocysteine Methionine biosynthesis 2 2
TF ModE Molybdate Molybdenum homeostasis 2 1
TF NagQ N-acetylglucosamine N-acetylglucosamine utilization 1 1
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 4 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 2
TF OapR Amino acid metabolism 1 1
TF PaaR Phenylacetyl-CoA Phenylacetic acid degradation 3 3
TF PdxQ3 Metabolite transport; Pyridoxine/pyridoxal homeostasis 1 1
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 2
TF PdxW2 Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnF Phosphonate utilization 3 4
TF PhnR2 2-aminoethylphosphonate 2-aminoethylphosphonate utilization 2 2
TF PsrA Oleate Fatty acid degradation 2 2
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 1 1
TF RbsR Ribose Ribose utilization 1 1
TF RutR Uracil Pyrimidine utilization 2 2
TF ScrR Sucrose Sucrose utilization 2 4
TF SdhR Tricarboxylic acid cycle 8 4
TF TauR Taurine Taurine utilization 5 3
TF UdhR Glucuronate utilization; Galacturonate utilization 3 3
TF UraR Uracil Pyrimidine utilization 1 2
TF UreR 2 6
TF UxuR2 Glucuronate utilization; Galacturonate utilization 5 10
TF VanR Vanillate Vanillate utilization 1 2
TF YdcR 4 4
TF YrdX 1 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 1 1
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 5 5
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 2 2
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA mini-ykkC Multidrug resistance 2 2
RNA sucA Tricarboxylic acid cycle 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA yybP-ykoY 1 1
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