Regulon of UxuR2 in Burkholderia phymatum STM815
| Regulator type: | Transcription factor |
| TF locus tag: | Bphy_6346, Bphy_5153 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | |
| Regulog: | UxuR2 - Burkholderia |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By TF family - GntR/Others
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -93
Score: 4.8 Sequence: ATACTGGCTTGACCAAACG
Position: -50
Score: 5 Sequence: CAATTGGACTGACCACGCG
Locus tag: Bphy_6345
Name: mglA Funciton: sugar ABC transporter, ATP-binding component
Locus tag: Bphy_6344
Name: Bamb_1227 Funciton: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: Bphy_6343
Name: Bamb_1226 Funciton: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: Bphy_6342
Name: tas Funciton: L-fuco-beta-pyranose dehydrogenase
Locus tag: Bphy_6341
Name: tdh Funciton: Alcohol dehydrogenase GroES-like
Locus tag: Bphy_6340
Name: uxaB Funciton: Altronate oxidoreductase |
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mglA
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sugar ABC transporter, ATP-binding component
|
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Bamb_1227
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sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
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Bamb_1226
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sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
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tas
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L-fuco-beta-pyranose dehydrogenase
|
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tdh
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Alcohol dehydrogenase GroES-like
|
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uxaB
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Altronate oxidoreductase
|
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Position: -117
Score: 3.6 Sequence: TCGGTGGCCTGACCAAAAC
Position: -98
Score: 3.8 Sequence: CGATTGGCCTGACCGCAGC
Locus tag: Bphy_5157
Name: null Funciton: putative simple sugar transport system substrate-binding protein
Locus tag: Bphy_5158
Name: mglA Funciton: ABC transporter related
Locus tag: Bphy_5159
Name: null Funciton: inner-membrane translocator
Locus tag: Bphy_5160
Name: null Funciton: inner-membrane translocator
Locus tag: Bphy_5161
Name: COG3386 Funciton: gluconolactonase
Locus tag: Bphy_5162
Name: null Funciton: putative ABC transporter |
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putative simple sugar transport system substrate-binding protein
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mglA
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ABC transporter related
|
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inner-membrane translocator
|
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inner-membrane translocator
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COG3386
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gluconolactonase
|
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putative ABC transporter
|
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Position: -261
Score: 4.9 Sequence: AAAGTGGCTTGACCACTGG
Position: -220
Score: 4.5 Sequence: AATCTGGTAAGACCACATA
Locus tag: Bphy_5154
Name: uhpC Funciton: Probable glucarate transporter
Locus tag: Bphy_5155
Name: uxaA Funciton: Altronate dehydratase
Locus tag: Bphy_5156
Name: idi Funciton: L-lactate dehydrogenase (cytochrome) |
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uhpC
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Probable glucarate transporter
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uxaA
|
Altronate dehydratase
|
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idi
|
L-lactate dehydrogenase (cytochrome)
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Position: -201
Score: 4.5 Sequence: TATGTGGTCTTACCAGATT
Position: -160
Score: 4.9 Sequence: CCAGTGGTCAAGCCACTTT
Locus tag: Bphy_5153
Name: uxuR3-3 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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uxuR3-3
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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Position: -198
Score: 5 Sequence: CGCGTGGTCAGTCCAATTG
Position: -155
Score: 4.8 Sequence: CGTTTGGTCAAGCCAGTAT
Locus tag: Bphy_6346
Name: uxuR2 Funciton: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family |
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uxuR2
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Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |